The following have been reloaded with a version change: 1) intel-mkl/2017.3.196-v7uuj6z => intel-mkl/2018.3.222-6ff5hhp 2) intel/17.0.4-74uvhji => intel/18.0.3-d6gtsxs Copyright (C) 2009-2018 Intel Corporation. All rights reserved. Intel(R) VTune(TM) Amplifier 2018 (build 558279) /home/sajid/.conda/envs/intelpy3/bin/python /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc -o ex_ms.o -c -O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc -fPIC -O3 -xMIC-AVX512 -fma -align -finline-functions -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw/include -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz/include -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf/include -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g/include -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb/include -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex/include -I/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include `pwd`/ex_ms.c /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc -O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc -fPIC -O3 -xMIC-AVX512 -fma -align -finline-functions -o ex_ms ex_ms.o -Wl,-rpath,/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw/lib -L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw/lib -Wl,-rpath,/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz/lib -L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz/lib 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-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf/lib /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so -Wl,-rpath,/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g/lib -L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g/lib -Wl,-rpath,/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb/lib -L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb/lib -Wl,-rpath,/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex/lib 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-L/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/lib -Wl,-rpath,/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/tbb/lib/intel64_lin/gcc4.7 -L/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/tbb/lib/intel64_lin/gcc4.7 -Wl,-rpath,/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64_lin -L/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64_lin -Wl,-rpath,/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64_lin -L/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64_lin -Wl,-rpath,/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/lib -L/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/lib 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-L/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/lib -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib/release_mt -Wl,-rpath,/opt/intel/mpi-rt/2017.0.0/intel64/lib -lpetsc -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt -lsuperlu_dist -lfftw3_mpi -lfftw3 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lparmetis -lmetis -lz -lintlc -lstdc++ -ldl -lmpifort -lmpi -lmpigi -lrt -lpthread -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lgcc_s -lirc_s -lstdc++ -ldl true ex_ms rm ex_ms.o Multi-slice xwp on 128 processors! mx : 32768, my: 32768, energy(in eV) : 2.000000e+04 Slice Num : 0 Slice Num : 1 Slice Num : 2 Slice Num : 3 Slice Num : 4 Slice Num : 5 Slice Num : 6 Slice Num : 7 Slice Num : 8 Slice Num : 9 Slice Num : 10 Slice Num : 11 Slice Num : 12 Slice Num : 13 Slice Num : 14 Slice Num : 15 Slice Num : 16 Slice Num : 17 Slice Num : 18 Slice Num : 19 Slice Num : 20 Slice Num : 21 Slice Num : 22 Slice Num : 23 Slice Num : 24 Slice Num : 25 Slice Num : 26 Slice Num : 27 Slice Num : 28 Slice Num : 29 Slice Num : 30 Slice Num : 31 Slice Num : 32 Slice Num : 33 Slice Num : 34 Slice Num : 35 Slice Num : 36 Slice Num : 37 Slice Num : 38 Slice Num : 39 Slice Num : 40 Slice Num : 41 Slice Num : 42 Slice Num : 43 Slice Num : 44 Slice Num : 45 Slice Num : 46 Slice Num : 47 Slice Num : 48 Slice Num : 49 Done! HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 52: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 59: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 4: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 14: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset [52]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [52]PETSC ERROR: Error in external library [52]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [52]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [52]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [52]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 minor: Unable to initialize object [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Error in external library [4]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [4]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 [14]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [14]PETSC ERROR: Error in external library [14]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [14]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [14]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [14]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 20: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [20]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [20]PETSC ERROR: Error in external library [20]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [20]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [20]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [20]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 21: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object [59]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [59]PETSC ERROR: Error in external library [59]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [59]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [59]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [59]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 66: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [21]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [21]PETSC ERROR: Error in external library [21]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [21]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [21]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [21]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 28: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 78: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [28]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 8: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object [28]PETSC ERROR: Error in external library [28]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [28]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [28]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [28]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [8]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [8]PETSC ERROR: Error in external library [8]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [8]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [8]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [8]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 30: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 23: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [30]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [30]PETSC ERROR: Error in external library [30]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [30]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [30]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [30]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [23]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [23]PETSC ERROR: Error in external library [23]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [23]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [23]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [23]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 24: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [24]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [24]PETSC ERROR: Error in external library [24]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [24]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [24]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [24]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 101: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 12: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links srun: Job step aborted: Waiting up to 32 seconds for job step to finish. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 121: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 26: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 10: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 122: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 35: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [26]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [26]PETSC ERROR: Error in external library [26]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [26]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 2: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [10]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [10]PETSC ERROR: Error in external library [10]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [10]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [10]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Error in external library [12]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [12]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 minor: Unable to initialize object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 17: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [66]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [66]PETSC ERROR: Error in external library [66]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [66]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [66]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [66]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 [26]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [26]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [2]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [2]PETSC ERROR: Error in external library [2]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [2]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [2]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 7: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [10]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 [52]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[17]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [17]PETSC ERROR: Error in external library [17]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [17]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [17]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [17]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 19: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [19]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [19]PETSC ERROR: Error in external library /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 0: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [59]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 3: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 5: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object major: Dataset minor: Unable to initialize object [35]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [35]PETSC ERROR: Error in external library [35]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [35]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [35]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [35]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [5]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [5]PETSC ERROR: Error in external library [5]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [35]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[7]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [7]PETSC ERROR: Error in external library [7]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [7]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [7]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [7]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 9: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [9]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [9]PETSC ERROR: Error in external library [9]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [9]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 37: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [9]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [9]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [37]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [37]PETSC ERROR: Error in external library [37]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [37]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 70: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [19]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [19]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [19]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [19]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 39: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Error in external library [0]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [0]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [39]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [39]PETSC ERROR: Error in external library [39]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [39]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [78]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [78]PETSC ERROR: Error in external library [78]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [78]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [78]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [78]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 [3]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [3]PETSC ERROR: Error in external library [3]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [3]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [3]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 [39]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [39]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [66]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[5]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [5]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 [39]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 6: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 41: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [41]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [41]PETSC ERROR: Error in external library [41]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [41]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 15: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [41]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [41]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [101]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [101]PETSC ERROR: Error in external library [101]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [70]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [70]PETSC ERROR: Error in external library [70]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [70]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [70]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [70]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [15]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [15]PETSC ERROR: Error in external library [15]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [15]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [41]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[70]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[15]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [15]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [52]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 16: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [52]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [52]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [52]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [52]PETSC ERROR: PETSc Option Table entries: [52]PETSC ERROR: -log_view [52]PETSC ERROR: -prop_steps 50 [52]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 52 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [16]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [16]PETSC ERROR: Error in external library [16]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [16]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 57: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [78]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[16]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [16]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [57]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [57]PETSC ERROR: Error in external library [57]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [57]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 31: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [57]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [57]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [31]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [31]PETSC ERROR: Error in external library [31]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [31]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [57]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[31]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [31]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [59]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [66]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 1: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [59]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [59]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [59]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [59]PETSC ERROR: PETSc Option Table entries: [59]PETSC ERROR: -log_view [59]PETSC ERROR: -prop_steps 50 [59]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 59 [66]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [66]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [66]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [66]PETSC ERROR: PETSc Option Table entries: [66]PETSC ERROR: -log_view [66]PETSC ERROR: -prop_steps 50 [66]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 66 [6]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [6]PETSC ERROR: Error in external library [6]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [6]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [6]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [6]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 67: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 11: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [35]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [67]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [67]PETSC ERROR: Error in external library [67]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [67]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [11]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [11]PETSC ERROR: Error in external library [11]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [11]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [35]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [35]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [35]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [35]PETSC ERROR: PETSc Option Table entries: [35]PETSC ERROR: -log_view [35]PETSC ERROR: -prop_steps 50 [35]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 35 [67]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [67]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 13: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [37]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [37]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [67]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [13]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [13]PETSC ERROR: Error in external library [13]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [13]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [37]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[13]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [13]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [70]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 18: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[70]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [70]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [70]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [70]PETSC ERROR: PETSc Option Table entries: [70]PETSC ERROR: -log_view [70]PETSC ERROR: -prop_steps 50 [70]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 70 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [18]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [18]PETSC ERROR: Error in external library [18]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [18]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 75: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [18]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [18]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [75]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [75]PETSC ERROR: Error in external library [75]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [75]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 22: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[75]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [75]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [22]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [22]PETSC ERROR: Error in external library [22]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [22]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [39]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [75]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[22]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [22]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [78]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 25: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[121]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [121]PETSC ERROR: Error in external library [121]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [121]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [121]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [121]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 [78]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [78]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [78]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [78]PETSC ERROR: PETSc Option Table entries: [78]PETSC ERROR: -log_view [78]PETSC ERROR: -prop_steps 50 [78]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 78 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [25]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [25]PETSC ERROR: Error in external library [25]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [25]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 87: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [25]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [25]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [41]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [101]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [101]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [101]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [87]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [87]PETSC ERROR: Error in external library [87]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [87]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 27: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 47: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [122]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [122]PETSC ERROR: Error in external library [122]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [87]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [87]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [27]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [27]PETSC ERROR: Error in external library [27]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [27]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [47]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [47]PETSC ERROR: Error in external library [47]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [47]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [101]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[87]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[27]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [27]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 [47]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [47]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 93: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 29: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [47]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/le/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [93]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [93]PETSC ERROR: Error in external library [93]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [93]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [29]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [29]PETSC ERROR: Error in external library [29]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [29]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 53: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu[93]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [93]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 [29]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [29]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [53]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [53]PETSC ERROR: Error in external library [53]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [53]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [121]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[93]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [1]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: Error in external library [1]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [53]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [53]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[1]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [1]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 [53]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/le/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[11]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [11]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0001 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaret/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[0]PETSC ERROR: slurmstepd: error: *** STEP 1017838.0 ON apsxrmd-0001 CANCELLED AT 2019-04-15T16:52:21 *** /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[122]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [122]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [122]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [67]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [4]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[122]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 72: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [57]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [72]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [72]PETSC ERROR: Error in external library [72]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [72]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt//spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[72]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [72]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includee=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [37]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [101]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 74: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [5]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li[37]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [37]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [37]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [37]PETSC ERROR: PETSc Option Table entries: [37]PETSC ERROR: -log_view [37]PETSC ERROR: -prop_steps 50 [37]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 37 [101]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [101]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [101]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [101]PETSC ERROR: PETSc Option Table entries: [101]PETSC ERROR: -log_view [101]PETSC ERROR: -prop_steps 50 [101]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 101 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [74]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [74]PETSC ERROR: Error in external library [74]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [74]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 38: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 103: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [74]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [74]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [38]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [38]PETSC ERROR: Error in external library [38]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [38]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [103]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [103]PETSC ERROR: Error in external library [103]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [103]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [74]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lspack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include[38]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [103]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [103]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[8]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li[39]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [39]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [39]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [39]PETSC ERROR: PETSc Option Table entries: [39]PETSC ERROR: -log_view [39]PETSC ERROR: -prop_steps 50 [39]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 39 [103]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optnux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 40: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 117: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includspack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [40]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [40]PETSC ERROR: Error in external library [40]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [40]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [117]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [117]PETSC ERROR: Error in external library [117]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [117]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [75]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include[40]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [40]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [117]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [117]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 80: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [10]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[40]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[117]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [80]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [80]PETSC ERROR: Error in external library [80]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [80]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[41]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [41]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [41]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [41]PETSC ERROR: PETSc Option Table entries: [41]PETSC ERROR: -log_view [41]PETSC ERROR: -prop_steps 50 [41]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 41 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [121]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [80]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [80]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[121]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [121]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [121]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [121]PETSC ERROR: PETSc Option Table entries: [121]PETSC ERROR: -log_view [121]PETSC ERROR: -prop_steps 50 [121]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 121 [80]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-incluinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[14]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includde=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [122]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [47]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [122]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [122]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [122]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [122]PETSC ERROR: PETSc Option Table entries: [122]PETSC ERROR: -log_view [122]PETSC ERROR: -prop_steps 50 [122]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 122 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 48: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 126: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [87]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [48]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [48]PETSC ERROR: Error in external library [48]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [48]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [126]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [126]PETSC ERROR: Error in external library [126]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [126]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 92: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [17]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[48]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [48]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [126]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [126]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [92]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [92]PETSC ERROR: Error in external library [92]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [92]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[48]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[126]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[92]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [92]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 49: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 96: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [92]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [49]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [49]PETSC ERROR: Error in external library [49]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [49]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [96]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [96]PETSC ERROR: Error in external library [96]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [96]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[23]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[49]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [49]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [96]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [96]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[49]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[96]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarelinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [93]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opte/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 64: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [24]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [64]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [64]PETSC ERROR: Error in external library [64]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [64]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [53]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [103]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [64]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [64]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[57]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [57]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [57]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [57]PETSC ERROR: PETSc Option Table entries: [57]PETSC ERROR: -log_view [57]PETSC ERROR: -prop_steps 50 [57]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 57 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[64]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 61: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 65: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [28]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [61]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [61]PETSC ERROR: Error in external library [61]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [61]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [65]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [65]PETSC ERROR: Error in external library [65]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [65]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[61]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [61]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [117]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [65]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [65]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[61]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 118: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [65]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 62: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [118]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [118]PETSC ERROR: Error in external library [118]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [118]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [67]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [67]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [67]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [67]PETSC ERROR: PETSc Option Table entries: [67]PETSC ERROR: -log_view [67]PETSC ERROR: -prop_steps 50 [67]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 67 [30]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [62]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [62]PETSC ERROR: Error in external library [62]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [62]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [118]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [118]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 68: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[62]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [62]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [118]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [68]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [68]PETSC ERROR: Error in external library [68]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [68]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[62]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 120: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [68]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [68]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 32: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [120]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [120]PETSC ERROR: Error in external library [120]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [120]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [68]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lConfigure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [32]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [32]PETSC ERROR: Error in external library [32]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [32]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [120]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [120]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 69: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object 64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt[32]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [32]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [120]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [69]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [69]PETSC ERROR: Error in external library [69]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [69]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-cent[32]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/llinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[69]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [69]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 os7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/homHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 33: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[69]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[1]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [33]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [33]PETSC ERROR: Error in external library [33]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [33]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu[72]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lnux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/[33]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [33]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [126]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarespack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/[33]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optspack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includeHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 34: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[2]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [34]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [34]PETSC ERROR: Error in external library [34]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [34]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 73: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/[34]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [34]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [96]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [73]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [73]PETSC ERROR: Error in external library [73]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [73]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/[34]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 98: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [73]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [73]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includeHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 36: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [98]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [98]PETSC ERROR: Error in external library [98]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [98]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [73]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[3]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [36]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [36]PETSC ERROR: Error in external library [36]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [36]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [98]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [98]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarenux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/[36]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [36]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [98]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optspack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/[36]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[103]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [103]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [103]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [103]PETSC ERROR: PETSc Option Table entries: [103]PETSC ERROR: -log_view [103]PETSC ERROR: -prop_steps 50 [103]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 103 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includspack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include[38]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 104: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [74]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c =/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [4]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [38]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [104]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [104]PETSC ERROR: Error in external library [104]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [104]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [75]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [75]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [75]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [75]PETSC ERROR: PETSc Option Table entries: [75]PETSC ERROR: -log_view [75]PETSC ERROR: -prop_steps 50 [75]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 75 [4]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [4]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [4]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [4]PETSC ERROR: PETSc Option Table entries: [4]PETSC ERROR: -log_view [4]PETSC ERROR: -prop_steps 50 [4]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 4 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[104]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [104]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 76: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object =/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [5]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[104]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [76]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [76]PETSC ERROR: Error in external library [76]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [76]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [5]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [5]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [5]PETSC ERROR: PETSc Option Table entries: [5]PETSC ERROR: -log_view [5]PETSC ERROR: -prop_steps 50 [5]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 5 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 106: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [76]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [76]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 [6]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [106]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [106]PETSC ERROR: Error in external library [106]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [106]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [76]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lnux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software//spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[106]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [106]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 77: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [40]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [106]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [77]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [77]PETSC ERROR: Error in external library [77]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [77]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includeHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 42: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 108: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [77]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [77]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 [7]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [42]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [42]PETSC ERROR: Error in external library [42]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [42]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [108]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [108]PETSC ERROR: Error in external library [108]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [108]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [77]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lnux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/[42]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [42]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [108]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [108]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarespack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/[42]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[108]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optspack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includeHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 43: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 115: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [8]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [43]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [43]PETSC ERROR: Error in external library [43]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [43]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [115]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [115]PETSC ERROR: Error in external library [115]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [115]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [80]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [8]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [8]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [8]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [8]PETSC ERROR: PETSc Option Table entries: [8]PETSC ERROR: -log_view [8]PETSC ERROR: -prop_steps 50 [8]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 8 [43]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [43]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 [115]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [115]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 81: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [9]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/li[43]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[115]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [81]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [81]PETSC ERROR: Error in external library [81]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [81]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. nux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 44: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [117]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [117]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [117]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [117]PETSC ERROR: PETSc Option Table entries: [117]PETSC ERROR: -log_view [117]PETSC ERROR: -prop_steps 50 [117]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 117 [81]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [81]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [44]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [44]PETSC ERROR: Error in external library [44]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [44]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[81]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lspack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include[44]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [44]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 82: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [10]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [44]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [82]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [82]PETSC ERROR: Error in external library [82]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [82]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [10]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [10]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [10]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [10]PETSC ERROR: PETSc Option Table entries: [10]PETSC ERROR: -log_view [10]PETSC ERROR: -prop_steps 50 [10]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 10 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 45: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [118]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [82]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [82]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 [11]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [45]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [45]PETSC ERROR: Error in external library [45]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [45]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 119: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [82]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[45]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [45]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [119]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [119]PETSC ERROR: Error in external library [119]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [119]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 85: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[45]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[119]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [119]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [85]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [85]PETSC ERROR: Error in external library [85]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [85]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 46: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [119]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[85]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [85]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 [12]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [46]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [46]PETSC ERROR: Error in external library [46]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [46]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[85]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[46]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [46]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[87]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [87]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [87]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [87]PETSC ERROR: PETSc Option Table entries: [87]PETSC ERROR: -log_view [87]PETSC ERROR: -prop_steps 50 [87]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 87 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[46]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-incluHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 88: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[47]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [47]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [47]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [47]PETSC ERROR: PETSc Option Table entries: [47]PETSC ERROR: -log_view [47]PETSC ERROR: -prop_steps 50 [47]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 47 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [120]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [88]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [88]PETSC ERROR: Error in external library [88]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [88]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [13]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 125: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [88]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [88]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [125]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [125]PETSC ERROR: Error in external library [125]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [125]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [88]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[125]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [125]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 89: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [48]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [125]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [89]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [89]PETSC ERROR: Error in external library [89]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [89]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [14]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[126]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [126]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [126]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [126]PETSC ERROR: PETSc Option Table entries: [126]PETSC ERROR: -log_view [126]PETSC ERROR: -prop_steps 50 [126]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 126 [89]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [89]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 [14]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [14]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [14]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [14]PETSC ERROR: PETSc Option Table entries: [14]PETSC ERROR: -log_view [14]PETSC ERROR: -prop_steps 50 [14]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 14 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 127: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [89]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[15]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [127]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [127]PETSC ERROR: Error in external library [127]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [127]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 91: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [49]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [127]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [127]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [91]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [91]PETSC ERROR: Error in external library [91]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [91]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 50: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [127]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[91]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [91]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [50]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [50]PETSC ERROR: Error in external library [50]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [50]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [96]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [96]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [96]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [96]PETSC ERROR: PETSc Option Table entries: [96]PETSC ERROR: -log_view [96]PETSC ERROR: -prop_steps 50 [96]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 96 [91]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[16]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[50]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [50]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 97: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[50]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [97]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [97]PETSC ERROR: Error in external library [97]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [97]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 51: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [97]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [97]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [51]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [51]PETSC ERROR: Error in external library [51]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [51]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [97]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/le=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [92]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [17]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [51]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [51]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[93]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [93]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [93]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [93]PETSC ERROR: PETSc Option Table entries: [93]PETSC ERROR: -log_view [93]PETSC ERROR: -prop_steps 50 [93]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 93 [17]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [17]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [17]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [17]PETSC ERROR: PETSc Option Table entries: [17]PETSC ERROR: -log_view [17]PETSC ERROR: -prop_steps 50 [17]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 17 [51]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 94: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [18]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[53]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [53]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [53]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [53]PETSC ERROR: PETSc Option Table entries: [53]PETSC ERROR: -log_view [53]PETSC ERROR: -prop_steps 50 [53]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 53 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [94]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [94]PETSC ERROR: Error in external library [94]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [94]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 54: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [98]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [94]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [94]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [54]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [54]PETSC ERROR: Error in external library [54]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [54]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 99: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [94]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[54]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [54]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [99]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [99]PETSC ERROR: Error in external library [99]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [99]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 95: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [19]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[54]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[99]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [99]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [95]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [95]PETSC ERROR: Error in external library [95]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [95]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 55: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [99]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[95]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [95]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [55]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [55]PETSC ERROR: Error in external library [55]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [55]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 100: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [95]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[55]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [55]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [100]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [100]PETSC ERROR: Error in external library [100]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [100]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[20]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[55]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[100]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [100]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 56: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [100]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [56]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [56]PETSC ERROR: Error in external library [56]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [56]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 102: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [64]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[56]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [56]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [102]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [102]PETSC ERROR: Error in external library [102]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [102]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[21]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[56]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[102]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [102]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 58: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [102]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [58]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [58]PETSC ERROR: Error in external library [58]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [58]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [65]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[58]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [58]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[22]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[58]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 60: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [104]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [60]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [60]PETSC ERROR: Error in external library [60]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [60]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 105: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [68]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[60]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [60]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [105]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [105]PETSC ERROR: Error in external library [105]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [105]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [23]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [60]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[105]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [105]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[23]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [23]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [23]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [23]PETSC ERROR: PETSc Option Table entries: [23]PETSC ERROR: -log_view [23]PETSC ERROR: -prop_steps 50 [23]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 23 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[105]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [24]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [69]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [24]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [24]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [24]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [24]PETSC ERROR: PETSc Option Table entries: [24]PETSC ERROR: -log_view [24]PETSC ERROR: -prop_steps 50 [24]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 24 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 71: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [25]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/le=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [61]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [71]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [71]PETSC ERROR: Error in external library [71]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [71]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarede=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [106]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [71]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [71]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 107: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [71]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [107]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [107]PETSC ERROR: Error in external library [107]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [107]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [72]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [26]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/le=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [62]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [107]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [107]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 [72]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [72]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [72]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [72]PETSC ERROR: PETSc Option Table entries: [72]PETSC ERROR: -log_view [72]PETSC ERROR: -prop_steps 50 [72]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 72 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 63: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [107]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [63]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [63]PETSC ERROR: Error in external library [63]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [63]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[63]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [63]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0002 by sajid Mon Apr 15 16:36:38 2019 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[27]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[63]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/lt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclue=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [73]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarede=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [108]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [74]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [74]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [74]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [74]PETSC ERROR: PETSc Option Table entries: [74]PETSC ERROR: -log_view [74]PETSC ERROR: -prop_steps 50 [74]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 74 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 109: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [109]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [109]PETSC ERROR: Error in external library [109]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [109]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opte=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [28]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [32]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [109]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [109]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[28]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [28]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [28]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [28]PETSC ERROR: PETSc Option Table entries: [28]PETSC ERROR: -log_view [28]PETSC ERROR: -prop_steps 50 [28]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 28 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[109]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [76]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [29]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 110: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [110]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [110]PETSC ERROR: Error in external library [110]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [110]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opte=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [33]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [110]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [110]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[110]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [77]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [30]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 111: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 79: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [30]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [30]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [30]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [30]PETSC ERROR: PETSc Option Table entries: [30]PETSC ERROR: -log_view [30]PETSC ERROR: -prop_steps 50 [30]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 30 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [111]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [111]PETSC ERROR: Error in external library [111]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [111]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [79]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [79]PETSC ERROR: Error in external library [79]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [79]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [31]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/le=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [34]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [111]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [111]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 [79]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [79]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[111]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[79]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 112: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [80]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [80]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [80]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [80]PETSC ERROR: PETSc Option Table entries: [80]PETSC ERROR: -log_view [80]PETSC ERROR: -prop_steps 50 [80]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 80 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [112]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [112]PETSC ERROR: Error in external library [112]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [112]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [0]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [0]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [36]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [112]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [112]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[0]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [0]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [0]PETSC ERROR: PETSc Option Table entries: [0]PETSC ERROR: -log_view [0]PETSC ERROR: -prop_steps 50 [0]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 0 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[112]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [1]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [38]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 113: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [81]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [1]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [1]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [1]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [1]PETSC ERROR: PETSc Option Table entries: [1]PETSC ERROR: -log_view [1]PETSC ERROR: -prop_steps 50 [1]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 1 [38]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [38]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [38]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [38]PETSC ERROR: PETSc Option Table entries: [38]PETSC ERROR: -log_view [38]PETSC ERROR: -prop_steps 50 [38]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 38 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [113]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [113]PETSC ERROR: Error in external library [113]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [113]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [2]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [40]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [40]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [40]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [40]PETSC ERROR: PETSc Option Table entries: [40]PETSC ERROR: -log_view [40]PETSC ERROR: -prop_steps 50 [40]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 40 [113]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [113]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[2]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [2]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [2]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [2]PETSC ERROR: PETSc Option Table entries: [2]PETSC ERROR: -log_view [2]PETSC ERROR: -prop_steps 50 [2]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 2 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[113]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [3]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 114: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [82]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [3]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [3]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [3]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [3]PETSC ERROR: PETSc Option Table entries: [3]PETSC ERROR: -log_view [3]PETSC ERROR: -prop_steps 50 [3]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 3 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [114]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [114]PETSC ERROR: Error in external library [114]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [114]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 83: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object =/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [6]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [42]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [114]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [114]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [83]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [83]PETSC ERROR: Error in external library [83]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [83]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [6]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [6]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [6]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [6]PETSC ERROR: PETSc Option Table entries: [6]PETSC ERROR: -log_view [6]PETSC ERROR: -prop_steps 50 [6]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 6 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[114]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/[83]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [83]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 =/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [7]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[83]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[7]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [7]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [7]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [7]PETSC ERROR: PETSc Option Table entries: [7]PETSC ERROR: -log_view [7]PETSC ERROR: -prop_steps 50 [7]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 7 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 84: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object =/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [9]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [43]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [84]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [84]PETSC ERROR: Error in external library [84]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [84]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [9]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [9]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [9]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [9]PETSC ERROR: PETSc Option Table entries: [9]PETSC ERROR: -log_view [9]PETSC ERROR: -prop_steps 50 [9]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 9 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarede=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [115]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [84]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [84]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [11]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 116: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object [84]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[11]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [11]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [11]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [11]PETSC ERROR: PETSc Option Table entries: [11]PETSC ERROR: -log_view [11]PETSC ERROR: -prop_steps 50 [11]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 11 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [116]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [116]PETSC ERROR: Error in external library [116]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [116]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [12]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [44]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [116]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [116]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[12]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [12]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [12]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [12]PETSC ERROR: PETSc Option Table entries: [12]PETSC ERROR: -log_view [12]PETSC ERROR: -prop_steps 50 [12]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 12 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[116]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack//spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [13]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[118]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [118]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [118]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [118]PETSC ERROR: PETSc Option Table entries: [118]PETSC ERROR: -log_view [118]PETSC ERROR: -prop_steps 50 [118]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 118 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [85]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [13]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [13]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [13]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [13]PETSC ERROR: PETSc Option Table entries: [13]PETSC ERROR: -log_view [13]PETSC ERROR: -prop_steps 50 [13]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 13 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 86: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [15]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [45]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [86]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [86]PETSC ERROR: Error in external library [86]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [86]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [15]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [15]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [15]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [15]PETSC ERROR: PETSc Option Table entries: [15]PETSC ERROR: -log_view [15]PETSC ERROR: -prop_steps 50 [15]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 15 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaret/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu[86]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [86]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [16]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optde=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [119]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [86]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[16]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [16]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [16]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [16]PETSC ERROR: PETSc Option Table entries: [16]PETSC ERROR: -log_view [16]PETSC ERROR: -prop_steps 50 [16]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 16 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[120]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [120]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [120]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [120]PETSC ERROR: PETSc Option Table entries: [120]PETSC ERROR: -log_view [120]PETSC ERROR: -prop_steps 50 [120]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 120 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [18]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [46]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 123: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[18]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [18]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [18]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [18]PETSC ERROR: PETSc Option Table entries: [18]PETSC ERROR: -log_view [18]PETSC ERROR: -prop_steps 50 [18]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 18 [48]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [48]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [48]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [48]PETSC ERROR: PETSc Option Table entries: [48]PETSC ERROR: -log_view [48]PETSC ERROR: -prop_steps 50 [48]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 48 #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [123]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [123]PETSC ERROR: Error in external library [123]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [123]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [19]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [49]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [49]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [49]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [49]PETSC ERROR: PETSc Option Table entries: [49]PETSC ERROR: -log_view [49]PETSC ERROR: -prop_steps 50 [49]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 49 [123]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [123]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [88]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [19]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [19]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [19]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [19]PETSC ERROR: PETSc Option Table entries: [19]PETSC ERROR: -log_view [19]PETSC ERROR: -prop_steps 50 [19]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 19 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[123]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [20]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optHDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 124: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[20]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [20]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [20]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [20]PETSC ERROR: PETSc Option Table entries: [20]PETSC ERROR: -log_view [20]PETSC ERROR: -prop_steps 50 [20]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 20 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [124]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [124]PETSC ERROR: Error in external library [124]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [124]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [21]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [50]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [124]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [124]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0004 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [89]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [21]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [21]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [21]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [21]PETSC ERROR: PETSc Option Table entries: [21]PETSC ERROR: -log_view [21]PETSC ERROR: -prop_steps 50 [21]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 21 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[124]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/HDF5-DIAG: Error detected in HDF5 (1.10.5) MPI-process 90: #000: H5D.c line 145 in H5Dcreate2(): unable to create dataset major: Dataset minor: Unable to initialize object #001: H5Dint.c line 329 in H5D__create_named(): unable to create and link to dataset major: Dataset minor: Unable to initialize object #002: H5L.c line 1557 in H5L_link_object(): unable to create new link to object major: Links minor: Unable to initialize object #003: H5L.c line 1798 in H5L__create_real(): can't insert link major: Links minor: Unable to insert object #004: H5Gtraverse.c line 851 in H5G_traverse(): internal path traversal failed major: Symbol table minor: Object not found #005: H5Gtraverse.c line 627 in H5G__traverse_real(): traversal operator failed major: Symbol table minor: Callback failed #006: H5L.c line 1604 in H5L__link_cb(): unable to create object major: Links minor: Unable to initialize object e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [22]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar #007: H5Oint.c line 2453 in H5O_obj_create(): unable to open object major: Object header minor: Can't open object #008: H5Doh.c line 300 in H5O__dset_create(): unable to create dataset major: Dataset minor: Unable to initialize object #009: H5Dint.c line 1274 in H5D__create(): unable to construct layout information major: Dataset minor: Unable to initialize object #010: H5Dchunk.c line 872 in H5D__chunk_construct(): unable to set chunk sizes major: Dataset minor: Bad value #011: H5Dchunk.c line 831 in H5D__chunk_set_sizes(): chunk size must be < 4GB major: Dataset minor: Unable to initialize object [90]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [90]PETSC ERROR: Error in external library [90]PETSC ERROR: Error in HDF5 call H5Dcreate2() Status -1 [90]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [22]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [22]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [22]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [22]PETSC ERROR: PETSc Option Table entries: [22]PETSC ERROR: -log_view [22]PETSC ERROR: -prop_steps 50 [22]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 22 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[90]PETSC ERROR: Petsc Release Version 3.11.1, Apr, 12, 2019 [90]PETSC ERROR: /blues/gpfs/home/sajid/projects/large_zp_petsc/MS/./ex_ms on a named apsxrmd-0003 by sajid Mon Apr 15 16:36:38 2019 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [25]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [51]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu[90]PETSC ERROR: Configure options --prefix=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/petsc-3.11.1-znnski52i7eihozxqp5jushd2aquekgw --with-ssl=0 --download-c2html=0 --download-sowing=0 --download-hwloc=0 CFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gcc" FFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/gfortran" CXXFLAGS="-O3 -xMIC-AVX512 -gcc-name=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-7.3.0-xyzezhjmbiebkjfoakso464rhfshlkyq/bin/g++" --with-cc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicc --with-cxx=/blues/gpfs/home/software/spack-0.10.1/opt/spack/l[25]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [25]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [25]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [25]PETSC ERROR: PETSc Option Table entries: [25]PETSC ERROR: -log_view [25]PETSC ERROR: -prop_steps 50 [25]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 25 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarede=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [125]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [26]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[26]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [26]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [26]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [26]PETSC ERROR: PETSc Option Table entries: [26]PETSC ERROR: -log_view [26]PETSC ERROR: -prop_steps 50 [26]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 26 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [27]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [54]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclue=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [91]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [27]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [27]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [27]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [27]PETSC ERROR: PETSc Option Table entries: [27]PETSC ERROR: -log_view [27]PETSC ERROR: -prop_steps 50 [27]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 27 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarede=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [127]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [92]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [92]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [92]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [92]PETSC ERROR: PETSc Option Table entries: [92]PETSC ERROR: -log_view [92]PETSC ERROR: -prop_steps 50 [92]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 92 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [29]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwareinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[29]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [29]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [29]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [29]PETSC ERROR: PETSc Option Table entries: [29]PETSC ERROR: -log_view [29]PETSC ERROR: -prop_steps 50 [29]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 29 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opte=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [31]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [55]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[31]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [31]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [31]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [31]PETSC ERROR: PETSc Option Table entries: [31]PETSC ERROR: -log_view [31]PETSC ERROR: -prop_steps 50 [31]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 31 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [97]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [94]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[98]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [98]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [98]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [98]PETSC ERROR: PETSc Option Table entries: [98]PETSC ERROR: -log_view [98]PETSC ERROR: -prop_steps 50 [98]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 98 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opte=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [56]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [95]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opte=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [99]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [64]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [64]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [64]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [64]PETSC ERROR: PETSc Option Table entries: [64]PETSC ERROR: -log_view [64]PETSC ERROR: -prop_steps 50 [64]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 64 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[65]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [65]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [65]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [65]PETSC ERROR: PETSc Option Table entries: [65]PETSC ERROR: -log_view [65]PETSC ERROR: -prop_steps 50 [65]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 65 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [58]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[68]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [68]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [68]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [68]PETSC ERROR: PETSc Option Table entries: [68]PETSC ERROR: -log_view [68]PETSC ERROR: -prop_steps 50 [68]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 68 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaret/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu[69]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [69]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [69]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [69]PETSC ERROR: PETSc Option Table entries: [69]PETSC ERROR: -log_view [69]PETSC ERROR: -prop_steps 50 [69]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 69 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optde=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [100]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opte=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [60]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[61]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [61]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [61]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [61]PETSC ERROR: PETSc Option Table entries: [61]PETSC ERROR: -log_view [61]PETSC ERROR: -prop_steps 50 [61]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 61 t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclue=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [71]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [62]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [62]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [62]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [62]PETSC ERROR: PETSc Option Table entries: [62]PETSC ERROR: -log_view [62]PETSC ERROR: -prop_steps 50 [62]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 62 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [102]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [73]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [73]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [73]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [73]PETSC ERROR: PETSc Option Table entries: [73]PETSC ERROR: -log_view [73]PETSC ERROR: -prop_steps 50 [73]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 73 inux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[104]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [104]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [104]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [104]PETSC ERROR: PETSc Option Table entries: [104]PETSC ERROR: -log_view [104]PETSC ERROR: -prop_steps 50 [104]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 104 [76]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [76]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [76]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [76]PETSC ERROR: PETSc Option Table entries: [76]PETSC ERROR: -log_view [76]PETSC ERROR: -prop_steps 50 [76]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 76 /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optlinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[77]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [77]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [77]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [77]PETSC ERROR: PETSc Option Table entries: [77]PETSC ERROR: -log_view [77]PETSC ERROR: -prop_steps 50 [77]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 77 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [63]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[32]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [32]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [32]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [32]PETSC ERROR: PETSc Option Table entries: [32]PETSC ERROR: -log_view [32]PETSC ERROR: -prop_steps 50 [32]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 32 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [105]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[33]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [33]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [33]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [33]PETSC ERROR: PETSc Option Table entries: [33]PETSC ERROR: -log_view [33]PETSC ERROR: -prop_steps 50 [33]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 33 [106]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [106]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [106]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [106]PETSC ERROR: PETSc Option Table entries: [106]PETSC ERROR: -log_view [106]PETSC ERROR: -prop_steps 50 [106]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 106 e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [79]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [34]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [34]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [34]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [34]PETSC ERROR: PETSc Option Table entries: [34]PETSC ERROR: -log_view [34]PETSC ERROR: -prop_steps 50 [34]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 34 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[81]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [81]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [81]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [81]PETSC ERROR: PETSc Option Table entries: [81]PETSC ERROR: -log_view [81]PETSC ERROR: -prop_steps 50 [81]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 81 [36]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [36]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [36]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [36]PETSC ERROR: PETSc Option Table entries: [36]PETSC ERROR: -log_view [36]PETSC ERROR: -prop_steps 50 [36]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 36 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[82]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [82]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [82]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [82]PETSC ERROR: PETSc Option Table entries: [82]PETSC ERROR: -log_view [82]PETSC ERROR: -prop_steps 50 [82]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 82 [42]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [42]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [42]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [42]PETSC ERROR: PETSc Option Table entries: [42]PETSC ERROR: -log_view [42]PETSC ERROR: -prop_steps 50 [42]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 42 t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-incluinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[43]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [43]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [43]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [43]PETSC ERROR: PETSc Option Table entries: [43]PETSC ERROR: -log_view [43]PETSC ERROR: -prop_steps 50 [43]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 43 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [107]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[44]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [44]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [44]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [44]PETSC ERROR: PETSc Option Table entries: [44]PETSC ERROR: -log_view [44]PETSC ERROR: -prop_steps 50 [44]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 44 [108]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [108]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [108]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [108]PETSC ERROR: PETSc Option Table entries: [108]PETSC ERROR: -log_view [108]PETSC ERROR: -prop_steps 50 [108]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 108 /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[45]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [45]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [45]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [45]PETSC ERROR: PETSc Option Table entries: [45]PETSC ERROR: -log_view [45]PETSC ERROR: -prop_steps 50 [45]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 45 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [83]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [46]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [46]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [46]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [46]PETSC ERROR: PETSc Option Table entries: [46]PETSC ERROR: -log_view [46]PETSC ERROR: -prop_steps 50 [46]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 46 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[50]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [50]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [50]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [50]PETSC ERROR: PETSc Option Table entries: [50]PETSC ERROR: -log_view [50]PETSC ERROR: -prop_steps 50 [50]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 50 t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[51]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [51]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [51]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [51]PETSC ERROR: PETSc Option Table entries: [51]PETSC ERROR: -log_view [51]PETSC ERROR: -prop_steps 50 [51]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 51 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [109]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[54]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [54]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [54]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [54]PETSC ERROR: PETSc Option Table entries: [54]PETSC ERROR: -log_view [54]PETSC ERROR: -prop_steps 50 [54]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 54 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [84]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [55]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [55]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [55]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [55]PETSC ERROR: PETSc Option Table entries: [55]PETSC ERROR: -log_view [55]PETSC ERROR: -prop_steps 50 [55]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 55 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[85]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [85]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [85]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [85]PETSC ERROR: PETSc Option Table entries: [85]PETSC ERROR: -log_view [85]PETSC ERROR: -prop_steps 50 [85]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 85 [56]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [56]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [56]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [56]PETSC ERROR: PETSc Option Table entries: [56]PETSC ERROR: -log_view [56]PETSC ERROR: -prop_steps 50 [56]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 56 t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-incluinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software[58]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [58]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [58]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [58]PETSC ERROR: PETSc Option Table entries: [58]PETSC ERROR: -log_view [58]PETSC ERROR: -prop_steps 50 [58]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 58 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [110]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c /spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt[60]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [60]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [60]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [60]PETSC ERROR: PETSc Option Table entries: [60]PETSC ERROR: -log_view [60]PETSC ERROR: -prop_steps 50 [60]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 60 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includ[63]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [63]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [63]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [63]PETSC ERROR: PETSc Option Table entries: [63]PETSC ERROR: -log_view [63]PETSC ERROR: -prop_steps 50 [63]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 63 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/ope=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [86]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu[88]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [88]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [88]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [88]PETSC ERROR: PETSc Option Table entries: [88]PETSC ERROR: -log_view [88]PETSC ERROR: -prop_steps 50 [88]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 88 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [111]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [89]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [89]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [89]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [89]PETSC ERROR: PETSc Option Table entries: [89]PETSC ERROR: -log_view [89]PETSC ERROR: -prop_steps 50 [89]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 89 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwarinux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwaree/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/optt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-includde=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [112]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c e=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [90]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[91]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [91]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [91]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [91]PETSC ERROR: PETSc Option Table entries: [91]PETSC ERROR: -log_view [91]PETSC ERROR: -prop_steps 50 [91]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 91 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[94]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [94]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [94]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [94]PETSC ERROR: PETSc Option Table entries: [94]PETSC ERROR: -log_view [94]PETSC ERROR: -prop_steps 50 [94]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 94 t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu[95]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [95]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [95]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [95]PETSC ERROR: PETSc Option Table entries: [95]PETSC ERROR: -log_view [95]PETSC ERROR: -prop_steps 50 [95]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 95 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [113]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [71]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [71]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [71]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [71]PETSC ERROR: PETSc Option Table entries: [71]PETSC ERROR: -log_view [71]PETSC ERROR: -prop_steps 50 [71]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 71 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/softwar[79]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [79]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [79]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [79]PETSC ERROR: PETSc Option Table entries: [79]PETSC ERROR: -log_view [79]PETSC ERROR: -prop_steps 50 [79]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 79 e/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/op[83]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [83]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [83]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [83]PETSC ERROR: PETSc Option Table entries: [83]PETSC ERROR: -log_view [83]PETSC ERROR: -prop_steps 50 [83]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 83 t/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-inclu[84]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [84]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [84]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [84]PETSC ERROR: PETSc Option Table entries: [84]PETSC ERROR: -log_view [84]PETSC ERROR: -prop_steps 50 [84]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 84 de=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [114]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [86]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [86]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [86]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [86]PETSC ERROR: PETSc Option Table entries: [86]PETSC ERROR: -log_view [86]PETSC ERROR: -prop_steps 50 [86]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 86 [115]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [115]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [115]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [115]PETSC ERROR: PETSc Option Table entries: [115]PETSC ERROR: -log_view [115]PETSC ERROR: -prop_steps 50 [115]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 115 [90]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [90]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [90]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [90]PETSC ERROR: PETSc Option Table entries: [90]PETSC ERROR: -log_view [90]PETSC ERROR: -prop_steps 50 [90]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 90 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [116]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [119]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [119]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [119]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [119]PETSC ERROR: PETSc Option Table entries: [119]PETSC ERROR: -log_view [119]PETSC ERROR: -prop_steps 50 [119]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 119 linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [123]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiicpc --with-fc=/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mpi-2018.3.222-4aoglyb6zfpaydn6iuiz63wyj3soolv2/compilers_and_libraries_2018.3.222/linux/mpi/intel64/bin/mpiifort --FC_LINKER_FLAGS=-lintlc --with-precision=double --with-scalar-type=complex --with-shared-libraries=1 --with-debugging=0 --with-64-bit-indices=0 COPTFLAGS= FOPTFLAGS= CXXOPTFLAGS= --with-blaslapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_intel_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_sequential.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_core.so /lib64/libpthread.so /lib64/libm.so /lib64/libdl.so" --with-avx-512-kernels --with-memalign=64 --with-x=0 --with-clanguage=C --with-scalapack-lib="/blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so /blues/gpfs/home/software/spack-0.10.1/opt/spack/linux-centos7-x86_64/intel-18.0.3/intel-mkl-2018.3.222-6ff5hhpjd6k3y4uvcg4mrthoqj3e3ok4/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_blacs_intelmpi_lp64.so" --with-scalapack=1 --with-metis=1 --with-metis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/metis-5.1.0-2kdch3t6ljztuicullkck2e3arqqt5ex --with-hdf5=1 --with-hdf5-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/hdf5-1.10.5-4l2oqer7h7evmjcweba5iym767fnvn4g --with-hypre=0 --with-parmetis=1 --with-parmetis-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/parmetis-4.0.3-v3i7edwwswc2n6rmenqvezvtxmohblgb --with-mumps=1 --with-mumps-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/mumps-5.1.2-r3ikbyhtguup57aoebhasf6fxjawkfbz --with-trilinos=0 --with-fftw=1 --with-fftw-dir=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/fftw-3.3.8-s7bwdojusvwl3tdqqrdj6xg3jffitfmf --with-cxx-dialect=C++11 --with-superlu_dist-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/include --with-superlu_dist-lib=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/superlu-dist-6.1.1-3jhheliclr3aigedstzj273jgu4fbyqg/lib/libsuperlu_dist.a --with-superlu_dist=1 --with-suitesparse-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/include --with-suitesparse-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/suite-sparse-5.3.0-yoplzbxos5vipsvfn72gp5gttsu5zduu/lib -L/lib64 -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lrt" --with-suitesparse=1 --with-zlib-include=/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/include --with-zlib-lib="-L/blues/gpfs/home/sajid/packages/spack/opt/spack/linux-centos7-x86_64/intel-18.0.3/zlib-1.2.11-6kmiiipb73pscb6ruoi5xceamyzvgrmu/lib -lz" --with-zlib=1 [124]PETSC ERROR: #1 VecView_MPI_HDF5() line 813 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [125]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [125]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [125]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [125]PETSC ERROR: PETSc Option Table entries: [125]PETSC ERROR: -log_view [125]PETSC ERROR: -prop_steps 50 [125]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 125 [127]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [127]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [127]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [127]PETSC ERROR: PETSc Option Table entries: [127]PETSC ERROR: -log_view [127]PETSC ERROR: -prop_steps 50 [127]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 127 [97]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [97]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [97]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [97]PETSC ERROR: PETSc Option Table entries: [97]PETSC ERROR: -log_view [97]PETSC ERROR: -prop_steps 50 [97]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 97 [99]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [99]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [99]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [99]PETSC ERROR: PETSc Option Table entries: [99]PETSC ERROR: -log_view [99]PETSC ERROR: -prop_steps 50 [99]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 99 [100]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [100]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [100]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [100]PETSC ERROR: PETSc Option Table entries: [100]PETSC ERROR: -log_view [100]PETSC ERROR: -prop_steps 50 [100]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 100 [102]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [102]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [102]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [102]PETSC ERROR: PETSc Option Table entries: [102]PETSC ERROR: -log_view [102]PETSC ERROR: -prop_steps 50 [102]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 102 [105]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [105]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [105]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [105]PETSC ERROR: PETSc Option Table entries: [105]PETSC ERROR: -log_view [105]PETSC ERROR: -prop_steps 50 [105]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 105 [107]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [107]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [107]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [107]PETSC ERROR: PETSc Option Table entries: [107]PETSC ERROR: -log_view [107]PETSC ERROR: -prop_steps 50 [107]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 107 [109]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [109]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [109]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [109]PETSC ERROR: PETSc Option Table entries: [109]PETSC ERROR: -log_view [109]PETSC ERROR: -prop_steps 50 [109]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 109 [110]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [110]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [110]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [110]PETSC ERROR: PETSc Option Table entries: [110]PETSC ERROR: -log_view [110]PETSC ERROR: -prop_steps 50 [110]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 110 [111]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [111]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [111]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [111]PETSC ERROR: PETSc Option Table entries: [111]PETSC ERROR: -log_view [111]PETSC ERROR: -prop_steps 50 [111]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 111 [112]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [112]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [112]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [112]PETSC ERROR: PETSc Option Table entries: [112]PETSC ERROR: -log_view [112]PETSC ERROR: -prop_steps 50 [112]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 112 [113]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [113]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [113]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [113]PETSC ERROR: PETSc Option Table entries: [113]PETSC ERROR: -log_view [113]PETSC ERROR: -prop_steps 50 [113]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 113 [114]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [114]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [114]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [114]PETSC ERROR: PETSc Option Table entries: [114]PETSC ERROR: -log_view [114]PETSC ERROR: -prop_steps 50 [114]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 114 [116]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [116]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [116]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [116]PETSC ERROR: PETSc Option Table entries: [116]PETSC ERROR: -log_view [116]PETSC ERROR: -prop_steps 50 [116]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 116 [123]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [123]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [123]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [123]PETSC ERROR: PETSc Option Table entries: [123]PETSC ERROR: -log_view [123]PETSC ERROR: -prop_steps 50 [123]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 123 [124]PETSC ERROR: #2 VecView_MPI() line 958 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/impls/mpi/pdvec.c [124]PETSC ERROR: #3 VecView() line 590 in /scratch/sajid/spack-stage/spack-stage-rNrz4g/petsc-3.11.1/src/vec/vec/interface/vector.c [124]PETSC ERROR: #4 main() line 125 in /home/sajid/projects/large_zp_petsc/MS/ex_ms.c [124]PETSC ERROR: PETSc Option Table entries: [124]PETSC ERROR: -log_view [124]PETSC ERROR: -prop_steps 50 [124]PETSC ERROR: ----------------End of Error Message -------send entire error message to petsc-maint@mcs.anl.gov---------- application called MPI_Abort(MPI_COMM_WORLD, 76) - process 124 srun: error: apsxrmd-0003: tasks 64-95: Killed srun: error: apsxrmd-0002: tasks 32-63: Killed srun: error: apsxrmd-0004: tasks 96-127: Killed srun: error: apsxrmd-0001: tasks 0-31: Killed