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<p class="MsoNormal"><span style="font-size:11.0pt">Last time I built PETSc on Pleiades it was version 3.8.3. Using the same build procedure with the same compilers and MPI libraries with 3.11 does not work. Is there a way to enable more verbose diagnostics
during the configure phase so I can figure out what executable was being run and how it was compiled?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">PBS r147i6n10 24> ./configure --prefix=/nobackupp8/XXX /Projects/CHEM/BoA_Case/Codes-2018.3.222/binaries/petsc-3.11+ --with-debugging=0 --with-shared-libraries=1 --with-cc=mpicc --with-fc=mpif90 --with-cxx=mpicxx
--with-blas-lapack-dir=$MKLROOT/lib/intel64 --with-scalapack-include=$MKLROOT/include --with-scalapack-lib="$MKLROOT/lib/intel64/libmkl_scalapack_lp64.so $MKLROOT/lib/intel64/libmkl_blacs_sgimpt_lp64.so" --with-cpp=/usr/bin/cpp --with-gnu-compilers=0 --with-vendor-compilers=intel
-COPTFLAGS="-g -O3 -xCORE-AVX2 -diag-disable=cpu-dispatch" -CXXOPTFLAGS="-g -O3 -xCORE-AVX2 -diag-disable=cpu-dispatch" -FOPTFLAGS="-g -O3 -xCORE-AVX2 -diag-disable=cpu-dispatch" --with-mpi=true --with-mpi-exec=mpiexec --with-mpi-compilers=1 --with-precision=double
--with-scalar-type=real --with-x=0 --with-x11=0 --with-memalign=32<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">I get this which usually means that an executable was linked with libmpi, but was not launched with mpiexec.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">TESTING: configureMPITypes from config.packages.MPI(/nobackupp8/dkokron/Projects/CHEM/BoA_Case/Codes-2018.3.222/petsc/config/BuildSystem/config/packages/MPI.py:283)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">????????CMPT ERROR: mpiexec_mpt must be used to launch all MPI applications<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">????????CMPT ERROR: mpiexec_mpt must be used to launch all MPI applications<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">????????CMPT ERROR: mpiexec_mpt must be used to launch all MPI applications<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">If I let it continue, configure reports that MPI is empty.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">make:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">BLAS/LAPACK: -Wl,-rpath,/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64 -L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64 -lmkl_intel_lp64
-lmkl_sequential -lmkl_core -lpthread<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">MPI:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">cmake:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">pthread:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">scalapack:<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:8.5pt;font-family:"Tahoma",sans-serif;color:black">Daniel Kokron<br>
Redline Performance Solutions<br>
SciCon/APP group</span><span style="font-size:11.0pt"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt">-- <o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
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