This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by IBAMR configure 171104, which was generated by GNU Autoconf 2.69. Invocation command line was $ ../IBAMR/configure CFLAGS=-g -O3 -Wall CXXFLAGS=-g -O3 -Wall -std=gnu++14 FCFLAGS=-g -O3 -Wall CC=mpicc CXX=mpicxx FC=mpif90 --with-samrai=/home/asbhalla/softwares/SAMRAI/linux-opt --with-hdf5=/home/asbhalla/softwares/HDF5 --with-silo=/home/asbhalla/softwares/SILO --with-boost=/home/asbhalla/softwares/boost/1.67.0 --enable-libmesh --with-libmesh=/home/asbhalla/softwares/libMesh-Git/linux-opt --with-libmesh-method=opt PETSC_DIR=/home/asbhalla/softwares/PETSc-BitBucket/PETSc PETSC_ARCH=linux-opt ## --------- ## ## Platform. ## ## --------- ## hostname = master uname -m = x86_64 uname -r = 3.10.0-957.1.3.el7.x86_64 uname -s = Linux uname -v = #1 SMP Thu Nov 29 14:49:43 UTC 2018 /usr/bin/uname -p = x86_64 /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/asbhalla/softwares/Git-2.1.2/bin PATH: /usr/local/mpi/intel/openmpi-4.0.0/bin PATH: /opt/intel/compilers_and_libraries_2018.2.199/linux/debugger/gui/intel64 PATH: /opt/intel/compilers_and_libraries_2018.2.199/linux/bin/intel64 PATH: /opt/intel/compilers_and_libraries_2018.2.199/linux/debugger/gdb/intel64/py26/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /opt/ibutils/bin PATH: /home/asbhalla/.local/bin PATH: /home/asbhalla/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2787: checking for a BSD-compatible install configure:2855: result: /usr/bin/install -c configure:2866: checking whether build environment is sane configure:2921: result: yes configure:3072: checking for a thread-safe mkdir -p configure:3111: result: /usr/bin/mkdir -p configure:3118: checking for gawk configure:3134: found /usr/bin/gawk configure:3145: result: gawk configure:3156: checking whether make sets $(MAKE) configure:3178: result: yes configure:3207: checking whether make supports nested variables configure:3224: result: yes configure:3361: checking whether make supports nested variables configure:3378: result: yes configure:3390: checking whether to enable maintainer-specific portions of Makefiles configure:3399: result: no configure:3423: checking whether make supports the include directive configure:3438: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:3441: $? = 0 configure:3460: result: yes (GNU style) configure:3594: checking for C++ compiler version configure:3603: mpicxx --version >&5 icpc (ICC) 18.0.2 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:3614: $? = 0 configure:3603: mpicxx -v >&5 icpc version 18.0.2 (gcc version 4.8.5 compatibility) configure:3614: $? = 0 configure:3603: mpicxx -V >&5 Intel(R) C++ Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.2.199 Build 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:3614: $? = 0 configure:3603: mpicxx -qversion >&5 icpc: command line warning #10006: ignoring unknown option '-qversion' icpc: command line error: no files specified; for help type "icpc -help" configure:3614: $? = 1 configure:3634: checking whether the C++ compiler works configure:3656: mpicxx -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:3660: $? = 0 configure:3708: result: yes configure:3711: checking for C++ compiler default output file name configure:3713: result: a.out configure:3719: checking for suffix of executables configure:3726: mpicxx -o conftest -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:3730: $? = 0 configure:3752: result: configure:3774: checking whether we are cross compiling configure:3782: mpicxx -o conftest -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:3786: $? = 0 configure:3793: ./conftest configure:3797: $? = 0 configure:3812: result: no configure:3817: checking for suffix of object files configure:3839: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:3843: $? = 0 configure:3864: result: o configure:3868: checking whether we are using the GNU C++ compiler configure:3887: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:3887: $? = 0 configure:3896: result: yes configure:3905: checking whether mpicxx accepts -g configure:3925: mpicxx -c -g conftest.cpp >&5 configure:3925: $? = 0 configure:3966: result: yes configure:3991: checking dependency style of mpicxx configure:4102: result: gcc3 configure:4125: checking whether mpicxx supports C++11 features by default configure:4161: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:4161: $? = 0 configure:4168: result: yes configure:4418: checking for gcc configure:4445: result: mpicc configure:4674: checking for C compiler version configure:4683: mpicc --version >&5 icc (ICC) 18.0.2 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:4694: $? = 0 configure:4683: mpicc -v >&5 icc version 18.0.2 (gcc version 4.8.5 compatibility) configure:4694: $? = 0 configure:4683: mpicc -V >&5 Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.2.199 Build 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:4694: $? = 0 configure:4683: mpicc -qversion >&5 icc: command line warning #10006: ignoring unknown option '-qversion' icc: command line error: no files specified; for help type "icc -help" configure:4694: $? = 1 configure:4698: checking whether we are using the GNU C compiler configure:4717: mpicc -c -g -O3 -Wall conftest.c >&5 configure:4717: $? = 0 configure:4726: result: yes configure:4735: checking whether mpicc accepts -g configure:4755: mpicc -c -g conftest.c >&5 configure:4755: $? = 0 configure:4796: result: yes configure:4813: checking for mpicc option to accept ISO C89 configure:4876: mpicc -c -g -O3 -Wall conftest.c >&5 configure:4876: $? = 0 configure:4889: result: none needed configure:4914: checking whether mpicc understands -c and -o together configure:4936: mpicc -c conftest.c -o conftest2.o configure:4939: $? = 0 configure:4936: mpicc -c conftest.c -o conftest2.o configure:4939: $? = 0 configure:4951: result: yes configure:4970: checking dependency style of mpicc configure:5081: result: gcc3 configure:5101: checking how to run the C preprocessor configure:5132: mpicc -E conftest.c configure:5132: $? = 0 configure:5146: mpicc -E conftest.c conftest.c(12): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:5146: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #include configure:5171: result: mpicc -E configure:5191: mpicc -E conftest.c configure:5191: $? = 0 configure:5205: mpicc -E conftest.c conftest.c(12): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:5205: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #include configure:5345: checking for C++ compiler version configure:5354: mpicxx --version >&5 icpc (ICC) 18.0.2 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:5365: $? = 0 configure:5354: mpicxx -v >&5 icpc version 18.0.2 (gcc version 4.8.5 compatibility) configure:5365: $? = 0 configure:5354: mpicxx -V >&5 Intel(R) C++ Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.2.199 Build 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:5365: $? = 0 configure:5354: mpicxx -qversion >&5 icpc: command line warning #10006: ignoring unknown option '-qversion' icpc: command line error: no files specified; for help type "icpc -help" configure:5365: $? = 1 configure:5369: checking whether we are using the GNU C++ compiler configure:5397: result: yes configure:5406: checking whether mpicxx accepts -g configure:5467: result: yes configure:5492: checking dependency style of mpicxx configure:5603: result: gcc3 configure:5623: checking how to run the C++ preprocessor configure:5650: mpicxx -E conftest.cpp configure:5650: $? = 0 configure:5664: mpicxx -E conftest.cpp conftest.cpp(12): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:5664: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #include configure:5689: result: mpicxx -E configure:5709: mpicxx -E conftest.cpp configure:5709: $? = 0 configure:5723: mpicxx -E conftest.cpp conftest.cpp(12): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:5723: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | #include configure:5857: checking for Fortran compiler version configure:5866: mpif90 --version >&5 ifort (IFORT) 18.0.2 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:5877: $? = 0 configure:5866: mpif90 -v >&5 ifort version 18.0.2 configure:5877: $? = 0 configure:5866: mpif90 -V >&5 Intel(R) Fortran Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.2.199 Build 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:5877: $? = 0 configure:5866: mpif90 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' ifort: command line error: no files specified; for help type "ifort -help" configure:5877: $? = 1 configure:5886: checking whether we are using the GNU Fortran compiler configure:5899: mpif90 -c -g -O3 -Wall conftest.F >&5 ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: => = . [ % ( : choke me ---------------^ compilation aborted for conftest.F (code 1) configure:5899: $? = 1 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:5908: result: no configure:5914: checking whether mpif90 accepts -g configure:5925: mpif90 -c -g conftest.f >&5 configure:5925: $? = 0 configure:5933: result: yes configure:5966: checking build system type configure:5980: result: x86_64-pc-linux-gnu configure:6000: checking host system type configure:6013: result: x86_64-pc-linux-gnu configure:6038: checking how to get verbose linking output from mpif90 configure:6048: mpif90 -c -g -O3 -Wall conftest.f >&5 ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type configure:6048: $? = 0 configure:6066: mpif90 -o conftest -g -O3 -Wall -v conftest.f ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort version 18.0.2 /opt/intel/compilers_and_libraries_2018.2.199/linux/bin/intel64/fortcom -D__INTEL_COMPILER=1800 -D__INTEL_COMPILER_UPDATE=2 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D__amd64 -D__amd64__ -D__INTEL_COMPILER_BUILD_DATE=20180210 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE2_MATH__ -D__SSE__ -D__SSE_MATH__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I/usr/local/mpi/intel/openmpi-4.0.0/include -I/usr/local/mpi/intel/openmpi-4.0.0/lib64 -I/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/include -I/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/include -I/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include/intel64 -I/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include/icc -I/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include -I/usr/include/ -I/usr/include -O3 -g2 "-reentrancy threaded" -simd -offload_host -mGLOB_em64t=TRUE -mP1OPT_version=18.0-intel64 -mGLOB_diag_file=/tmp/ifortZzrq0E.diag -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=485 "-mGLOB_options_string=-I/usr/local/mpi/intel/openmpi-4.0.0/include -I/usr/local/mpi/intel/openmpi-4.0.0/lib64 -o conftest -g -O3 -Wall -v -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -Wl,-rpath -Wl,/opt/mellanox/hcoll/lib -Wl,-rpath -Wl,/opt/mellanox/mxm/lib -Wl,-rpath -Wl,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,--enable-new-dtags -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2018.2.199/linux/bin/intel64 -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mDEBUG_info_level=2 -mDEBUG_use_indirect_strings=TRUE -mIPOPT_ninl_debug_info=TRUE -mDEBUG_emit_dwarf_inline_info=TRUE -mDEBUG_debug_ranges=TRUE -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF40 -mGLOB_as_output_backup_file_name=/tmp/ifortygmSXYas_.s -mGLOB_dashboard_use_source_name -mIPOPT_activate -mIPOPT_lite -mGLOB_instruction_tuning=0x0 -mGLOB_uarch_tuning=0x0 -mGLOB_product_id_code=0x22006d90 -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mP2OPT_disam_type_based_disam=2 -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort0678567353vq9vod -mGLOB_opt_level=3 -mP2OPT_hlo_level=3 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2018.2.199/linux/bin/intel64/libiml_attr.so -mIPOPT_single_file_compile_and_link=TRUE -mP2OPT_hlo_embed_loopinfo -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_lto_object_enabled -mIPOPT_lto_object_value=1 -mIPOPT_obj_output_file_name=/tmp/ifortZzrq0E.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchnXG7Vi -mGLOB_linker_version=2.27 -mGLOB_driver_tempfile_name=/tmp/iforttempfileTlooVs -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifortZzrq0E.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f -mP1OPT_full_source_file_name=/home/asbhalla/softwares/IBAMR-Git/objs-opt/conftest.f -mP2OPT_symtab_type_copy=true conftest.f #include "..." search starts here: #include <...> search starts here: . /usr/local/mpi/intel/openmpi-4.0.0/include /usr/local/mpi/intel/openmpi-4.0.0/lib64 /opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/include /opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/include /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include/intel64 /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include/icc /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include /usr/include/ /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -m elf_x86_64 -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -o conftest /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin/for_main.o -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifortZzrq0E.o -rpath /opt/mellanox/hcoll/lib -rpath /opt/mellanox/mxm/lib -rpath /usr/local/mpi/intel/openmpi-4.0.0/lib64 --enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -Bdynamic -Bstatic -lifport -lifcoremt -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o configure:6149: result: -v configure:6151: checking for Fortran libraries of mpif90 configure:6174: mpif90 -o conftest -g -O3 -Wall -v conftest.f ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type ifort version 18.0.2 /opt/intel/compilers_and_libraries_2018.2.199/linux/bin/intel64/fortcom -D__INTEL_COMPILER=1800 -D__INTEL_COMPILER_UPDATE=2 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D__amd64 -D__amd64__ -D__INTEL_COMPILER_BUILD_DATE=20180210 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE2_MATH__ -D__SSE__ -D__SSE_MATH__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I/usr/local/mpi/intel/openmpi-4.0.0/include -I/usr/local/mpi/intel/openmpi-4.0.0/lib64 -I/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/include -I/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/include -I/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include/intel64 -I/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include/icc -I/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include -I/usr/include/ -I/usr/include -O3 -g2 "-reentrancy threaded" -simd -offload_host -mGLOB_em64t=TRUE -mP1OPT_version=18.0-intel64 -mGLOB_diag_file=/tmp/ifort54mE1Y.diag -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=485 "-mGLOB_options_string=-I/usr/local/mpi/intel/openmpi-4.0.0/include -I/usr/local/mpi/intel/openmpi-4.0.0/lib64 -o conftest -g -O3 -Wall -v -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -Wl,-rpath -Wl,/opt/mellanox/hcoll/lib -Wl,-rpath -Wl,/opt/mellanox/mxm/lib -Wl,-rpath -Wl,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,--enable-new-dtags -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2018.2.199/linux/bin/intel64 -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mDEBUG_info_level=2 -mDEBUG_use_indirect_strings=TRUE -mIPOPT_ninl_debug_info=TRUE -mDEBUG_emit_dwarf_inline_info=TRUE -mDEBUG_debug_ranges=TRUE -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF40 -mGLOB_as_output_backup_file_name=/tmp/ifortbsiw9jas_.s -mGLOB_dashboard_use_source_name -mIPOPT_activate -mIPOPT_lite -mGLOB_instruction_tuning=0x0 -mGLOB_uarch_tuning=0x0 -mGLOB_product_id_code=0x22006d90 -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mP2OPT_disam_type_based_disam=2 -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort0004791600oVwA9r -mGLOB_opt_level=3 -mP2OPT_hlo_level=3 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2018.2.199/linux/bin/intel64/libiml_attr.so -mIPOPT_single_file_compile_and_link=TRUE -mP2OPT_hlo_embed_loopinfo -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_lto_object_enabled -mIPOPT_lto_object_value=1 -mIPOPT_obj_output_file_name=/tmp/ifort54mE1Y.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchT15biF -mGLOB_linker_version=2.27 -mGLOB_driver_tempfile_name=/tmp/iforttempfileg2nGRP -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifort54mE1Y.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f -mP1OPT_full_source_file_name=/home/asbhalla/softwares/IBAMR-Git/objs-opt/conftest.f -mP2OPT_symtab_type_copy=true conftest.f #include "..." search starts here: #include <...> search starts here: . /usr/local/mpi/intel/openmpi-4.0.0/include /usr/local/mpi/intel/openmpi-4.0.0/lib64 /opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/include /opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/include /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include/intel64 /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include/icc /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.8.5/include /usr/include/ /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -m elf_x86_64 -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -o conftest /opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin/for_main.o -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifort54mE1Y.o -rpath /opt/mellanox/hcoll/lib -rpath /opt/mellanox/mxm/lib -rpath /usr/local/mpi/intel/openmpi-4.0.0/lib64 --enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -Bdynamic -Bstatic -lifport -lifcoremt -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o configure:6370: result: -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl configure:6387: checking for dummy main to link with Fortran libraries configure:6421: mpicc -o conftest -g -O3 -Wall conftest.c -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl >&5 configure:6421: $? = 0 configure:6466: result: none configure:6499: checking for Fortran name-mangling scheme configure:6512: mpif90 -c -g -O3 -Wall conftest.f >&5 ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type configure:6512: $? = 0 configure:6553: mpicc -o conftest -g -O3 -Wall conftest.c cfortran_test.o -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl >&5 /tmp/icchEXreD.o: In function `main': /home/asbhalla/softwares/IBAMR-Git/objs-opt/conftest.c:31: undefined reference to `foobar' configure:6553: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:6553: mpicc -o conftest -g -O3 -Wall conftest.c cfortran_test.o -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl >&5 configure:6553: $? = 0 configure:6611: mpicc -o conftest -g -O3 -Wall conftest.c cfortran_test.o -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl >&5 configure:6611: $? = 0 configure:6653: result: lower case, underscore, no extra underscore configure:6726: checking for Fortran flag to compile .f files configure:6746: mpif90 -c -g -O3 -Wall conftest.f >&5 ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type configure:6746: $? = 0 configure:6755: result: none configure:6937: checking for gcc configure:6964: result: mpicc configure:7193: checking for C compiler version configure:7202: mpicc --version >&5 icc (ICC) 18.0.2 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:7213: $? = 0 configure:7202: mpicc -v >&5 icc version 18.0.2 (gcc version 4.8.5 compatibility) configure:7213: $? = 0 configure:7202: mpicc -V >&5 Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.2.199 Build 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:7213: $? = 0 configure:7202: mpicc -qversion >&5 icc: command line warning #10006: ignoring unknown option '-qversion' icc: command line error: no files specified; for help type "icc -help" configure:7213: $? = 1 configure:7217: checking whether we are using the GNU C compiler configure:7253: result: yes configure:7262: checking whether mpicc accepts -g configure:7347: result: yes configure:7364: checking for mpicc option to accept ISO C89 configure:7448: result: none needed configure:7473: checking whether mpicc understands -c and -o together configure:7518: result: yes configure:7537: checking dependency style of mpicc configure:7648: result: gcc3 configure:7689: checking for function MPI_Init configure:7722: mpicc -o conftest -g -O3 -Wall conftest.c >&5 configure:7722: $? = 0 configure:7729: result: yes configure:7740: checking for mpi.h configure:7761: mpicc -c -g -O3 -Wall conftest.c >&5 configure:7761: $? = 0 configure:7762: result: yes configure:8019: checking for C++ compiler version configure:8028: mpicxx --version >&5 icpc (ICC) 18.0.2 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:8039: $? = 0 configure:8028: mpicxx -v >&5 icpc version 18.0.2 (gcc version 4.8.5 compatibility) configure:8039: $? = 0 configure:8028: mpicxx -V >&5 Intel(R) C++ Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.2.199 Build 20180210 Copyright (C) 1985-2018 Intel Corporation. All rights reserved. configure:8039: $? = 0 configure:8028: mpicxx -qversion >&5 icpc: command line warning #10006: ignoring unknown option '-qversion' icpc: command line error: no files specified; for help type "icpc -help" configure:8039: $? = 1 configure:8043: checking whether we are using the GNU C++ compiler configure:8079: result: yes configure:8088: checking whether mpicxx accepts -g configure:8173: result: yes configure:8198: checking dependency style of mpicxx configure:8309: result: gcc3 configure:8351: checking for function MPI_Init configure:8380: mpicxx -o conftest -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8380: $? = 0 configure:8387: result: yes configure:8398: checking for mpi.h configure:8419: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8419: $? = 0 configure:8420: result: yes configure:8457: checking for grep that handles long lines and -e configure:8515: result: /usr/bin/grep configure:8520: checking for egrep configure:8582: result: /usr/bin/grep -E configure:8587: checking for ANSI C header files configure:8615: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8615: $? = 0 configure:8688: mpicxx -o conftest -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8688: $? = 0 configure:8688: ./conftest configure:8688: $? = 0 configure:8699: result: yes configure:8712: checking for sys/types.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8712: checking for sys/stat.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8712: checking for stdlib.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8712: checking for string.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8712: checking for memory.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8712: checking for strings.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8712: checking for inttypes.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8712: checking for stdint.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8712: checking for unistd.h configure:8712: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8712: $? = 0 configure:8712: result: yes configure:8724: checking whether sys/types.h defines makedev configure:8748: mpicxx -o conftest -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:8748: $? = 0 configure:8757: result: yes configure:8782: checking for ANSI C header files configure:8894: result: yes configure:8948: checking how to print strings configure:8975: result: printf configure:8996: checking for a sed that does not truncate output configure:9060: result: /usr/bin/sed configure:9078: checking for fgrep configure:9140: result: /usr/bin/grep -F configure:9175: checking for ld used by mpicc configure:9242: result: /usr/bin/ld configure:9249: checking if the linker (/usr/bin/ld) is GNU ld configure:9264: result: yes configure:9276: checking for BSD- or MS-compatible name lister (nm) configure:9330: result: /usr/bin/nm -B configure:9460: checking the name lister (/usr/bin/nm -B) interface configure:9467: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:9470: /usr/bin/nm -B "conftest.o" configure:9473: output 0000000000000000 N .debug_info_seg 0000000000000000 B some_variable configure:9480: result: BSD nm configure:9483: checking whether ln -s works configure:9487: result: yes configure:9495: checking the maximum length of command line arguments configure:9626: result: 1572864 configure:9674: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format configure:9714: result: func_convert_file_noop configure:9721: checking how to convert x86_64-pc-linux-gnu file names to toolchain format configure:9741: result: func_convert_file_noop configure:9748: checking for /usr/bin/ld option to reload object files configure:9755: result: -r configure:9829: checking for objdump configure:9845: found /usr/bin/objdump configure:9856: result: objdump configure:9888: checking how to recognize dependent libraries configure:10088: result: pass_all configure:10173: checking for dlltool configure:10203: result: no configure:10233: checking how to associate runtime and link libraries configure:10260: result: printf %s\n configure:10320: checking for ar configure:10336: found /usr/bin/ar configure:10347: result: ar configure:10384: checking for archiver @FILE support configure:10409: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:10409: $? = 0 configure:10412: ar cru libconftest.a @conftest.lst >&5 configure:10415: $? = 0 configure:10420: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:10423: $? = 1 configure:10435: result: @ configure:10493: checking for strip configure:10509: found /usr/bin/strip configure:10520: result: strip configure:10592: checking for ranlib configure:10608: found /usr/bin/ranlib configure:10619: result: ranlib configure:10721: checking command to parse /usr/bin/nm -B output from mpicc object configure:10874: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:10877: $? = 0 configure:10881: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:10884: $? = 0 configure:10950: mpicxx -o conftest -g -O3 -Wall -std=gnu++14 conftest.cpp conftstm.o >&5 configure:10953: $? = 0 configure:10991: result: ok configure:11038: checking for sysroot configure:11068: result: no configure:11075: checking for a working dd configure:11113: result: /usr/bin/dd configure:11117: checking how to truncate binary pipes configure:11132: result: /usr/bin/dd bs=4096 count=1 configure:11268: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:11271: $? = 0 configure:11469: checking for mt configure:11499: result: no configure:11519: checking if : is a manifest tool configure:11525: : '-?' configure:11533: result: no configure:12215: checking for dlfcn.h configure:12215: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:12215: $? = 0 configure:12215: result: yes configure:12481: checking for objdir configure:12496: result: .libs configure:12760: checking if mpicc supports -fno-rtti -fno-exceptions configure:12778: mpicc -c -g -O3 -Wall -fno-rtti -fno-exceptions conftest.c >&5 configure:12782: $? = 0 configure:12795: result: yes configure:13153: checking for mpicc option to produce PIC configure:13160: result: -fPIC -DPIC configure:13168: checking if mpicc PIC flag -fPIC -DPIC works configure:13186: mpicc -c -g -O3 -Wall -fPIC -DPIC -DPIC conftest.c >&5 configure:13190: $? = 0 configure:13203: result: yes configure:13232: checking if mpicc static flag -static works configure:13260: result: no configure:13275: checking if mpicc supports -c -o file.o configure:13296: mpicc -c -g -O3 -Wall -o out/conftest2.o conftest.c >&5 configure:13300: $? = 0 configure:13322: result: yes configure:13330: checking if mpicc supports -c -o file.o configure:13377: result: yes configure:13410: checking whether the mpicc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14685: result: yes configure:14722: checking whether -lc should be explicitly linked in configure:14730: mpicc -c -g -O3 -Wall conftest.c >&5 configure:14733: $? = 0 configure:14748: mpicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 configure:14751: $? = 0 configure:14765: result: no configure:14925: checking dynamic linker characteristics configure:15514: mpicc -o conftest -g -O3 -Wall -Wl,-rpath -Wl,/foo conftest.c >&5 configure:15514: $? = 0 configure:15751: result: GNU/Linux ld.so configure:15873: checking how to hardcode library paths into programs configure:15898: result: immediate configure:16486: checking whether stripping libraries is possible configure:16491: result: yes configure:16526: checking if libtool supports shared libraries configure:16528: result: yes configure:16531: checking whether to build shared libraries configure:16556: result: yes configure:16559: checking whether to build static libraries configure:16563: result: yes configure:16586: checking how to run the C++ preprocessor configure:16652: result: mpicxx -E configure:16672: mpicxx -E conftest.cpp configure:16672: $? = 0 configure:16686: mpicxx -E conftest.cpp conftest.cpp(29): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:16686: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define HAVE_MPI 1 | #define HAVE_MPI 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:16848: checking for ld used by mpicxx configure:16915: result: /usr/bin/ld -m elf_x86_64 configure:16922: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:16937: result: yes configure:16992: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:18081: result: yes configure:18117: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:18120: $? = 0 configure:18601: checking for mpicxx option to produce PIC configure:18608: result: -fPIC -DPIC configure:18616: checking if mpicxx PIC flag -fPIC -DPIC works configure:18634: mpicxx -c -g -O3 -Wall -std=gnu++14 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:18638: $? = 0 configure:18651: result: yes configure:18674: checking if mpicxx static flag -static works configure:18702: result: no configure:18714: checking if mpicxx supports -c -o file.o configure:18735: mpicxx -c -g -O3 -Wall -std=gnu++14 -o out/conftest2.o conftest.cpp >&5 configure:18739: $? = 0 configure:18761: result: yes configure:18766: checking if mpicxx supports -c -o file.o configure:18813: result: yes configure:18843: checking whether the mpicxx linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:18883: result: yes configure:19024: checking dynamic linker characteristics configure:19777: result: GNU/Linux ld.so configure:19842: checking how to hardcode library paths into programs configure:19867: result: immediate configure:20013: checking if libtool supports shared libraries configure:20015: result: yes configure:20018: checking whether to build shared libraries configure:20042: result: yes configure:20045: checking whether to build static libraries configure:20049: result: yes configure:20083: mpif90 -c -g -O3 -Wall conftest.f >&5 ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type configure:20086: $? = 0 configure:20546: checking for mpif90 option to produce PIC configure:20553: result: -fPIC configure:20561: checking if mpif90 PIC flag -fPIC works configure:20579: mpif90 -c -g -O3 -Wall -fPIC conftest.f >&5 ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type configure:20583: $? = 0 configure:20596: result: yes configure:20619: checking if mpif90 static flag -static works configure:20647: result: no configure:20659: checking if mpif90 supports -c -o file.o configure:20680: mpif90 -c -g -O3 -Wall -o out/conftest2.o conftest.f >&5 ifort: command line warning #10157: ignoring option '-W'; argument is of wrong type configure:20684: $? = 0 configure:20706: result: yes configure:20711: checking if mpif90 supports -c -o file.o configure:20758: result: yes configure:20788: checking whether the mpif90 linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:21997: result: yes configure:22138: checking dynamic linker characteristics configure:22877: result: GNU/Linux ld.so configure:22942: checking how to hardcode library paths into programs configure:22967: result: immediate configure:23017: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:23032: result: yes configure:23046: checking for gm4 configure:23076: result: no configure:23046: checking for m4 configure:23062: found /usr/bin/m4 configure:23073: result: m4 configure:23087: checking for grep that handles long lines and -e configure:23145: result: /usr/bin/grep configure:23150: checking for a sed that does not truncate output configure:23214: result: /usr/bin/sed configure:23220: checking whether compiler supports __builtin_expect keyword configure:23250: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:23250: $? = 0 configure:23253: result: yes configure:23269: checking whether compiler supports __builtin_prefetch keyword configure:23293: mpicxx -c -g -O3 -Wall -std=gnu++14 conftest.cpp >&5 configure:23293: $? = 0 configure:23296: result: yes configure:23356: first check for a system Boost library; if not found, revert to bundled Boost library configure: this is boost.m4 serial 26 configure:23386: checking for Boost headers version >= 1.57.0 configure:23465: mpicxx -c -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 configure:23465: $? = 0 configure:23486: result: /home/asbhalla/softwares/boost/1.67.0/include configure:23509: checking for Boost's header version configure:23540: result: 1_67 configure:23597: checking boost/multi_array.hpp usability configure:23597: mpicxx -c -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 configure:23597: $? = 0 configure:23597: result: yes configure:23597: checking boost/multi_array.hpp presence configure:23597: mpicxx -E -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:23597: $? = 0 configure:23597: result: yes configure:23597: checking for boost/multi_array.hpp configure:23597: result: yes configure:23659: checking for ld used by mpicc configure:23726: result: /usr/bin/ld -m elf_x86_64 configure:23733: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:23748: result: yes configure:23755: checking for shared library run path origin configure:23768: result: done configure:23938: checking libmesh/libmesh.h usability configure:23938: mpicxx -c -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 configure:23938: $? = 0 configure:23938: result: yes configure:23938: checking libmesh/libmesh.h presence configure:23938: mpicxx -E -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:23938: $? = 0 configure:23938: result: yes configure:23938: checking for libmesh/libmesh.h configure:23938: result: yes configure:23946: checking libmesh/libmesh_config.h usability configure:23946: mpicxx -c -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 configure:23946: $? = 0 configure:23946: result: yes configure:23946: checking libmesh/libmesh_config.h presence configure:23946: mpicxx -E -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:23946: $? = 0 configure:23946: result: yes configure:23946: checking for libmesh/libmesh_config.h configure:23946: result: yes configure:23954: checking for libMesh version 1.1.0 or newer configure:23983: mpicxx -c -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 configure:23983: $? = 0 configure:23989: result: yes configure:23994: obtaining libMesh configuration information from libmesh_common.h configure:24016: mpicxx -o conftest -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 configure:24016: $? = 0 configure:24016: ./conftest configure:24016: $? = 0 configure:24052: checking for libmesh-config configure:24070: found /home/asbhalla/softwares/libMesh-Git/linux-opt/bin/libmesh-config configure:24082: result: /home/asbhalla/softwares/libMesh-Git/linux-opt/bin/libmesh-config configure:24106: checking for a usable libMesh UniquePtr/unique_ptr configuration configure:24134: mpicxx -c -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 configure:24134: $? = 0 configure:24140: result: yes configure:24631: checking for libnetcdf configure:24661: mpicxx -o conftest -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp -lnetcdf >&5 ld: cannot find -lnetcdf configure:24661: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define HAVE_MPI 1 | #define HAVE_MPI 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_BUILTIN_PREFETCH 1 | #define VERSION_MAJOR 1 | #define VERSION_MINOR 0 | #define VERSION_SUBMINOR 0 | #define HAVE_BOOST 1 | /* end confdefs.h. */ | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | | ; | return 0; | } configure:24671: result: no configure:24701: using Eigen library bundled with libMesh configure:25208: checking for libmesh_opt configure:25238: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc configure:25238: $? = 0 configure:25248: result: yes configure:25255: checking how to link with libmesh_opt configure:25257: result: -lmesh_opt configure:27565: first check for a system Eigen library; if not found, revert to bundled Eigen library configure:27595: checking Eigen/Eigen usability configure:27595: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:27595: $? = 0 configure:27595: result: yes configure:27595: checking Eigen/Eigen presence configure:27595: mpicxx -E -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:27595: $? = 0 configure:27595: result: yes configure:27595: checking for Eigen/Eigen configure:27595: result: yes configure:27686: checking for Eigen version >= 3.1.0 configure:27714: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:27714: $? = 0 configure:27720: result: yes configure:27794: checking hdf5.h usability configure:27794: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:27794: $? = 0 configure:27794: result: yes configure:27794: checking hdf5.h presence configure:27794: mpicxx -E -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:27794: $? = 0 configure:27794: result: yes configure:27794: checking for hdf5.h configure:27794: result: yes configure:28290: checking for libhdf5 configure:28320: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/HDF5/lib conftest.cpp -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 configure:28320: $? = 0 configure:28330: result: yes configure:28337: checking how to link with libhdf5 configure:28339: result: /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib configure:28846: checking for libhdf5_hl configure:28876: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:28876: $? = 0 configure:28886: result: yes configure:28893: checking how to link with libhdf5_hl configure:28895: result: /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib configure:28924: checking for HDF5 version >= 1.8.7 configure:28952: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:28952: $? = 0 configure:28958: result: yes configure:29003: PETSc appears to provide hypre; using PETSc hypre library configure:29658: first check for a system muParser library; if not found, revert to bundled muParser library configure:29663: checking muParser.h usability configure:29663: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported conftest.cpp(72): catastrophic error: cannot open source file "muParser.h" #include ^ configure:29663: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define HAVE_MPI 1 | #define HAVE_MPI 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_BUILTIN_PREFETCH 1 | #define VERSION_MAJOR 1 | #define VERSION_MINOR 0 | #define VERSION_SUBMINOR 0 | #define HAVE_BOOST 1 | #define HAVE_LIBMESH_OPT 1 | #define HAVE_LIBMESH 1 | #define HAVE_LIBHDF5 1 | #define HAVE_LIBHDF5_HL 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:29663: result: no configure:29663: checking muParser.h presence configure:29663: mpicxx -E -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp conftest.cpp(39): error #2379: cannot open source file "muParser.h" #include ^ configure:29663: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "IBAMR" | #define PACKAGE_TARNAME "IBAMR" | #define PACKAGE_VERSION "171104" | #define PACKAGE_STRING "IBAMR 171104" | #define PACKAGE_BUGREPORT "boyceg@gmail.com" | #define PACKAGE_URL "https://ibamr.github.io" | #define PACKAGE "IBAMR" | #define VERSION "171104" | #define HAVE_CXX11 1 | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define HAVE_MPI 1 | #define HAVE_MPI 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define STDC_HEADERS 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_BUILTIN_PREFETCH 1 | #define VERSION_MAJOR 1 | #define VERSION_MINOR 0 | #define VERSION_SUBMINOR 0 | #define HAVE_BOOST 1 | #define HAVE_LIBMESH_OPT 1 | #define HAVE_LIBMESH 1 | #define HAVE_LIBHDF5 1 | #define HAVE_LIBHDF5_HL 1 | /* end confdefs.h. */ | #include configure:29663: result: no configure:29663: checking for muParser.h configure:29663: result: no configure:30806: could not find system muParser library, using bundled muParser library configure:30815: checking muParser.h usability configure:30815: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported In file included from /home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include/muParserStack.h(35), from /home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include/muParserBase.h(38), from /home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include/muParser.h(32), from conftest.cpp(72): /home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include/muParserToken.h(72): warning #1478: class "std::auto_ptr" (declared at line 87 of "/usr/include/c++/4.8.5/backward/auto_ptr.h") was declared deprecated std::auto_ptr m_pCallback; ^ In file included from /home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include/muParser.h(32), from conftest.cpp(72): /home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include/muParserBase.h(285): warning #1478: class "std::auto_ptr" (declared at line 87 of "/usr/include/c++/4.8.5/backward/auto_ptr.h") was declared deprecated std::auto_ptr m_pTokenReader; ///< Managed pointer to the token reader object. ^ configure:30815: $? = 0 configure:30815: result: yes configure:30815: checking muParser.h presence configure:30815: mpicxx -E -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:30815: $? = 0 configure:30815: result: yes configure:30815: checking for muParser.h configure:30815: result: yes configure:30892: using PETSC_DIR: /home/asbhalla/softwares/PETSc-BitBucket/PETSc configure:30894: using PETSC_ARCH: linux-opt configure:30903: checking petsc.h usability configure:30903: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:30903: $? = 0 configure:30903: result: yes configure:30903: checking petsc.h presence configure:30903: mpicxx -E -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:30903: $? = 0 configure:30903: result: yes configure:30903: checking for petsc.h configure:30903: result: yes configure:30912: checking for PETSc version 3.7 or newer configure:30945: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:30945: $? = 0 configure:30951: result: yes configure:31444: checking for libpetsc configure:31474: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/HDF5/lib conftest.cpp -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lpetsc >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:31474: $? = 0 configure:31484: result: yes configure:31491: checking how to link with libpetsc configure:31493: result: -lpetsc configure:31581: checking SAMRAI_config.h usability configure:31581: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:31581: $? = 0 configure:31581: result: yes configure:31581: checking SAMRAI_config.h presence configure:31581: mpicxx -E -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:31581: $? = 0 configure:31581: result: yes configure:31581: checking for SAMRAI_config.h configure:31581: result: yes configure:31590: checking whether SAMRAI is configured with debugging enabled configure:31617: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:31617: $? = 0 configure:31620: result: no configure:32123: checking for libSAMRAI configure:32153: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:32153: $? = 0 configure:32163: result: yes configure:32170: checking how to link with libSAMRAI configure:32172: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI.a configure:32699: checking for libSAMRAI2d_hier configure:32729: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_hier.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:32729: $? = 0 configure:32739: result: yes configure:32746: checking how to link with libSAMRAI2d_hier configure:32748: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_hier.a configure:33254: checking for libSAMRAI2d_xfer configure:33284: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_xfer.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:33284: $? = 0 configure:33294: result: yes configure:33301: checking how to link with libSAMRAI2d_xfer configure:33303: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_xfer.a configure:33809: checking for libSAMRAI2d_pdat_std configure:33839: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_pdat_std.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:33839: $? = 0 configure:33849: result: yes configure:33856: checking how to link with libSAMRAI2d_pdat_std configure:33858: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_pdat_std.a configure:34364: checking for libSAMRAI2d_math_std configure:34394: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_math_std.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:34394: $? = 0 configure:34404: result: yes configure:34411: checking how to link with libSAMRAI2d_math_std configure:34413: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_math_std.a configure:34919: checking for libSAMRAI2d_mesh configure:34949: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_mesh.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:34949: $? = 0 configure:34959: result: yes configure:34966: checking how to link with libSAMRAI2d_mesh configure:34968: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_mesh.a configure:35474: checking for libSAMRAI2d_geom configure:35504: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_geom.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:35504: $? = 0 configure:35514: result: yes configure:35521: checking how to link with libSAMRAI2d_geom configure:35523: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_geom.a configure:36029: checking for libSAMRAI2d_solv configure:36059: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_solv.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:36059: $? = 0 configure:36069: result: yes configure:36076: checking how to link with libSAMRAI2d_solv configure:36078: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_solv.a configure:36584: checking for libSAMRAI2d_algs configure:36614: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_algs.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:36614: $? = 0 configure:36624: result: yes configure:36631: checking how to link with libSAMRAI2d_algs configure:36633: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_algs.a configure:37139: checking for libSAMRAI2d_appu configure:37169: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_appu.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:37169: $? = 0 configure:37179: result: yes configure:37186: checking how to link with libSAMRAI2d_appu configure:37188: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_appu.a configure:37715: checking for libSAMRAI3d_hier configure:37745: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_hier.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:37745: $? = 0 configure:37755: result: yes configure:37762: checking how to link with libSAMRAI3d_hier configure:37764: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_hier.a configure:38270: checking for libSAMRAI3d_xfer configure:38300: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_xfer.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:38300: $? = 0 configure:38310: result: yes configure:38317: checking how to link with libSAMRAI3d_xfer configure:38319: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_xfer.a configure:38825: checking for libSAMRAI3d_pdat_std configure:38855: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_pdat_std.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:38855: $? = 0 configure:38865: result: yes configure:38872: checking how to link with libSAMRAI3d_pdat_std configure:38874: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_pdat_std.a configure:39380: checking for libSAMRAI3d_math_std configure:39410: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_math_std.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:39410: $? = 0 configure:39420: result: yes configure:39427: checking how to link with libSAMRAI3d_math_std configure:39429: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_math_std.a configure:39935: checking for libSAMRAI3d_mesh configure:39965: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_mesh.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:39965: $? = 0 configure:39975: result: yes configure:39982: checking how to link with libSAMRAI3d_mesh configure:39984: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_mesh.a configure:40490: checking for libSAMRAI3d_geom configure:40520: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_geom.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:40520: $? = 0 configure:40530: result: yes configure:40537: checking how to link with libSAMRAI3d_geom configure:40539: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_geom.a configure:41045: checking for libSAMRAI3d_solv configure:41075: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_solv.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:41075: $? = 0 configure:41085: result: yes configure:41092: checking how to link with libSAMRAI3d_solv configure:41094: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_solv.a configure:41600: checking for libSAMRAI3d_algs configure:41630: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_algs.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:41630: $? = 0 configure:41640: result: yes configure:41647: checking how to link with libSAMRAI3d_algs configure:41649: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_algs.a configure:42155: checking for libSAMRAI3d_appu configure:42185: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_appu.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:42185: $? = 0 configure:42195: result: yes configure:42202: checking how to link with libSAMRAI3d_appu configure:42204: result: /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_appu.a configure:42319: checking silo.h usability configure:42319: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SILO/include -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -DNDEBUG -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:42319: $? = 0 configure:42319: result: yes configure:42319: checking silo.h presence configure:42319: mpicxx -E -I/home/asbhalla/softwares/SILO/include -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -DNDEBUG -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp configure:42319: $? = 0 configure:42319: result: yes configure:42319: checking for silo.h configure:42319: result: yes configure:42328: checking for Silo version >= 4.9.1 configure:42356: mpicxx -c -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SILO/include -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -DNDEBUG -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include conftest.cpp >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported configure:42356: $? = 0 configure:42362: result: yes configure:42858: checking for libsilo configure:42888: mpicxx -o conftest -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14 -I/home/asbhalla/softwares/SILO/include -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -DNDEBUG -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -L/home/asbhalla/softwares/SILO/lib -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib conftest.cpp /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_appu.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_algs.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_solv.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_geom.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_mesh.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_math_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_pdat_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_xfer.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_hier.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_appu.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_algs.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_solv.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_geom.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_mesh.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_math_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_pdat_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_xfer.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_hier.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt /home/asbhalla/softwares/SILO/lib/libsilo.a -lz -lm >&5 icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported icpc: command line remark #10148: option '-Ob2' not supported icpc: command line remark #10148: option '-tpp6' not supported icpc: command line remark #10148: option '-vec_report0' not supported icpc: command line remark #10148: option '-par_report0' not supported icpc: command line remark #10148: option '-openmp_report0' not supported ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libm.so when searching for -lm ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libpthread.so when searching for -lpthread ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libdl.so when searching for -ldl ld: skipping incompatible /lib/libc.so when searching for -lc ld: skipping incompatible /lib/libc.so when searching for -lc ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5.so.8, needed by /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/libhdf5_cpp.so, may conflict with libhdf5.so.10 ld: warning: libhdf5_hl.so.8, needed by /home/asbhalla/softwares/libMesh-Git/linux-opt/lib/libmesh_opt.so, may conflict with libhdf5_hl.so.10 configure:42888: $? = 0 configure:42898: result: yes configure:42905: checking how to link with libsilo configure:42907: result: /home/asbhalla/softwares/SILO/lib/libsilo.a -lz -lm configure:44720: Optional package GNU Scientific Library is DISABLED configure:45475: Optional package Google Test Framework is DISABLED configure:45633: checking that generated files are newer than configure configure:45639: result: done configure:45714: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by IBAMR config.status 171104, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on master config.status:1646: creating Makefile config.status:1646: creating config/make.inc config.status:1646: creating examples/Makefile config.status:1646: creating examples/CIB/Makefile config.status:1646: creating examples/CIB/ex0/Makefile config.status:1646: creating examples/CIB/ex1/Makefile config.status:1646: creating examples/CIB/ex2/Makefile config.status:1646: creating examples/CIB/ex3/Makefile config.status:1646: creating examples/CIB/ex4/Makefile config.status:1646: creating examples/CIBFE/Makefile config.status:1646: creating examples/CIBFE/ex0/Makefile config.status:1646: creating examples/CIBFE/ex1/Makefile config.status:1646: creating examples/ConstraintIB/Makefile config.status:1646: creating examples/ConstraintIB/eel2d/Makefile config.status:1646: creating examples/ConstraintIB/eel3d/Makefile config.status:1646: creating examples/ConstraintIB/falling_sphere/Makefile config.status:1646: creating examples/ConstraintIB/flow_past_cylinder/Makefile config.status:1646: creating examples/ConstraintIB/flow_past_cylinder_HF/Makefile config.status:1646: creating examples/ConstraintIB/impulsively_started_cylinder/Makefile config.status:1646: creating examples/ConstraintIB/knifefish/Makefile config.status:1646: creating examples/ConstraintIB/moving_plate/Makefile config.status:1646: creating examples/ConstraintIB/oscillating_rigid_cylinder/Makefile config.status:1646: creating examples/ConstraintIB/stokes_first_problem/Makefile config.status:1646: creating examples/IB/Makefile config.status:1646: creating examples/IB/explicit/Makefile config.status:1646: creating examples/IB/explicit/ex0/Makefile config.status:1646: creating examples/IB/explicit/ex1/Makefile config.status:1646: creating examples/IB/explicit/ex2/Makefile config.status:1646: creating examples/IB/explicit/ex3/Makefile config.status:1646: creating examples/IB/explicit/ex4/Makefile config.status:1646: creating examples/IB/explicit/ex5/Makefile config.status:1646: creating examples/IB/explicit/ex6/Makefile config.status:1646: creating examples/IBFE/Makefile config.status:1646: creating examples/IBFE/explicit/Makefile config.status:1646: creating examples/IBFE/explicit/ex0/Makefile config.status:1646: creating examples/IBFE/explicit/ex1/Makefile config.status:1646: creating examples/IBFE/explicit/ex2/Makefile config.status:1646: creating examples/IBFE/explicit/ex3/Makefile config.status:1646: creating examples/IBFE/explicit/ex4/Makefile config.status:1646: creating examples/IBFE/explicit/ex5/Makefile config.status:1646: creating examples/IBFE/explicit/ex6/Makefile config.status:1646: creating examples/IBFE/explicit/ex7/Makefile config.status:1646: creating examples/IBFE/explicit/ex8/Makefile config.status:1646: creating examples/IBFE/explicit/ex9/Makefile config.status:1646: creating examples/IBFE/explicit/ex10/Makefile config.status:1646: creating examples/IBFE/explicit/ex11/Makefile config.status:1646: creating examples/IBLevelSet/Makefile config.status:1646: creating examples/IBLevelSet/ex0/Makefile config.status:1646: creating examples/IMP/Makefile config.status:1646: creating examples/IMP/explicit/Makefile config.status:1646: creating examples/IMP/explicit/ex0/Makefile config.status:1646: creating examples/adv_diff/Makefile config.status:1646: creating examples/adv_diff/ex0/Makefile config.status:1646: creating examples/adv_diff/ex1/Makefile config.status:1646: creating examples/adv_diff/ex2/Makefile config.status:1646: creating examples/advect/Makefile config.status:1646: creating examples/level_set/Makefile config.status:1646: creating examples/level_set/ex0/Makefile config.status:1646: creating examples/level_set/ex1/Makefile config.status:1646: creating examples/multiphase_flow/Makefile config.status:1646: creating examples/multiphase_flow/ex0/Makefile config.status:1646: creating examples/multiphase_flow/ex1/Makefile config.status:1646: creating examples/multiphase_flow/ex2/Makefile config.status:1646: creating examples/multiphase_flow/ex3/Makefile config.status:1646: creating examples/multiphase_flow/ex4/Makefile config.status:1646: creating examples/multiphase_flow/ex5/Makefile config.status:1646: creating examples/multiphase_flow/ex6/Makefile config.status:1646: creating examples/multiphase_flow/ex7/Makefile config.status:1646: creating examples/multiphase_flow/ex8/Makefile config.status:1646: creating examples/multiphase_flow/ex9/Makefile config.status:1646: creating examples/multiphase_flow/ex10/Makefile config.status:1646: creating examples/multiphase_flow/ex11/Makefile config.status:1646: creating examples/multiphase_flow/ex12/Makefile config.status:1646: creating examples/multiphase_flow/ex13/Makefile config.status:1646: creating examples/navier_stokes/Makefile config.status:1646: creating examples/navier_stokes/ex0/Makefile config.status:1646: creating examples/navier_stokes/ex1/Makefile config.status:1646: creating examples/navier_stokes/ex2/Makefile config.status:1646: creating examples/navier_stokes/ex3/Makefile config.status:1646: creating examples/navier_stokes/ex4/Makefile config.status:1646: creating examples/navier_stokes/ex5/Makefile config.status:1646: creating examples/navier_stokes/ex6/Makefile config.status:1646: creating examples/vc_navier_stokes/Makefile config.status:1646: creating examples/vc_navier_stokes/ex0/Makefile config.status:1646: creating examples/vc_navier_stokes/ex1/Makefile config.status:1646: creating examples/vc_navier_stokes/ex2/Makefile config.status:1646: creating examples/wave_tank/Makefile config.status:1646: creating examples/wave_tank/ex0/Makefile config.status:1646: creating examples/wave_tank/ex1/Makefile config.status:1646: creating lib/Makefile config.status:1646: creating src/Makefile config.status:1646: creating src/fortran/Makefile config.status:1646: creating src/IB/Makefile config.status:1646: creating src/adv_diff/Makefile config.status:1646: creating src/adv_diff/fortran/Makefile config.status:1646: creating src/advect/Makefile config.status:1646: creating src/advect/fortran/Makefile config.status:1646: creating src/level_set/Makefile config.status:1646: creating src/level_set/fortran/Makefile config.status:1646: creating src/navier_stokes/Makefile config.status:1646: creating src/navier_stokes/fortran/Makefile config.status:1646: creating src/utilities/Makefile config.status:1646: creating src/tools/Makefile config.status:1646: creating src/wave_tank/Makefile config.status:1646: creating tests/Makefile config.status:1646: creating tests/Stokes/Makefile config.status:1646: creating tests/Stokes/test0/Makefile config.status:1646: creating tests/Stokes-IB/Makefile config.status:1646: creating tests/Stokes-IB/test0/Makefile config.status:1646: creating tests/Stokes-IB/test1/Makefile config.status:1646: creating tests/Stokes-IB/test2/Makefile config.status:1646: creating config/IBAMR_config.h.tmp config.status:1860: executing config/IBAMR_config.h commands config.status:1898: creating config/IBAMR_config.h - prefix IBAMR for config/IBAMR_config.h.tmp defines config.status:1860: executing depfiles commands config.status:2026: cd examples/CIB/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/CIB/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/CIB/ex2 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/CIB/ex3 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/CIB/ex4 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/CIBFE/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/CIBFE/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/eel2d && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/eel3d && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/falling_sphere && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/flow_past_cylinder && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/flow_past_cylinder_HF && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/impulsively_started_cylinder && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/knifefish && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/moving_plate && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/oscillating_rigid_cylinder && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/ConstraintIB/stokes_first_problem && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IB/explicit/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IB/explicit/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IB/explicit/ex2 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IB/explicit/ex3 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IB/explicit/ex4 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IB/explicit/ex5 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IB/explicit/ex6 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex2 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex3 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex4 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex5 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex6 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex7 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex8 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex9 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex10 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBFE/explicit/ex11 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IBLevelSet/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/IMP/explicit/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/adv_diff/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/adv_diff/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/adv_diff/ex2 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/advect && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/level_set/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/level_set/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex2 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex3 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex4 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex5 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex6 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex7 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex8 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex9 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex10 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex11 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex12 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/multiphase_flow/ex13 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/navier_stokes/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/navier_stokes/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/navier_stokes/ex2 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/navier_stokes/ex3 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/navier_stokes/ex4 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/navier_stokes/ex5 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/navier_stokes/ex6 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/vc_navier_stokes/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/vc_navier_stokes/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/vc_navier_stokes/ex2 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/wave_tank/ex0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd examples/wave_tank/ex1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd lib && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd tests/Stokes/test0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd tests/Stokes-IB/test0 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd tests/Stokes-IB/test1 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:2026: cd tests/Stokes-IB/test2 && sed -e '/# am--include-marker/d' Makefile | make -f - am--depfiles config.status:2031: $? = 0 config.status:1860: executing libtool commands configure:48630: === configuring in ibtk (/home/asbhalla/softwares/IBAMR-Git/objs-opt/ibtk) configure:48693: running /bin/sh ../../IBAMR/ibtk/configure --disable-option-checking '--prefix=/usr/local' 'CFLAGS=-g -O3 -Wall' 'CXXFLAGS=-g -O3 -Wall -std=gnu++14' 'FCFLAGS=-g -O3 -Wall' 'CC=mpicc' 'CXX=mpicxx' 'FC=mpif90' '--with-samrai=/home/asbhalla/softwares/SAMRAI/linux-opt' '--with-hdf5=/home/asbhalla/softwares/HDF5' '--with-silo=/home/asbhalla/softwares/SILO' '--with-boost=/home/asbhalla/softwares/boost/1.67.0' '--enable-libmesh' '--with-libmesh=/home/asbhalla/softwares/libMesh-Git/linux-opt' '--with-libmesh-method=opt' 'PETSC_DIR=/home/asbhalla/softwares/PETSc-BitBucket/PETSc' 'PETSC_ARCH=linux-opt' --cache-file=/dev/null --srcdir=../../IBAMR/ibtk configure:48729: IBAMR appears to have been configured successfully. Now: make lib Build the IBAMR library and its supporting IBTK library make examples Build all of the IBAMR and IBTK example programs Note that the IBAMR and IBTK example programs are not run by "make examples". To run the examples, e.g., make examples cd examples/IB/explicit/ex0 ./main2d input2d You may also build and run individual example programs, e.g., via cd examples/IB/explicit/ex0 make examples ./main2d input2d ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_BOOST_ROOT_set= ac_cv_env_BOOST_ROOT_value= ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O3 -Wall' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O3 -Wall -std=gnu++14' ac_cv_env_CXX_set=set ac_cv_env_CXX_value=mpicxx ac_cv_env_FCFLAGS_set=set ac_cv_env_FCFLAGS_value='-g -O3 -Wall' ac_cv_env_FCLIBS_set= ac_cv_env_FCLIBS_value= ac_cv_env_FC_set=set ac_cv_env_FC_value=mpif90 ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_MPICC_set= ac_cv_env_MPICC_value= ac_cv_env_MPICXX_set= ac_cv_env_MPICXX_value= ac_cv_env_PETSC_ARCH_set=set ac_cv_env_PETSC_ARCH_value=linux-opt ac_cv_env_PETSC_DIR_set=set ac_cv_env_PETSC_DIR_value=/home/asbhalla/softwares/PETSc-BitBucket/PETSc ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_fc_compiler_gnu=no ac_cv_fc_dummy_main=none ac_cv_fc_libs=' -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl' ac_cv_fc_mangling='lower case, underscore, no extra underscore' ac_cv_fc_srcext_f=none ac_cv_fortran_dummy_main=none ac_cv_header_Eigen_Eigen=yes ac_cv_header_SAMRAI_config_h=yes ac_cv_header_boost_multi_array_hpp=yes ac_cv_header_dlfcn_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_libmesh_libmesh_config_h=yes ac_cv_header_libmesh_libmesh_h=yes ac_cv_header_memory_h=yes ac_cv_header_muParser_h=yes ac_cv_header_petsc_h=yes ac_cv_header_silo_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_types_h_makedev=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_libSAMRAI2d_algs=yes ac_cv_libSAMRAI2d_appu=yes ac_cv_libSAMRAI2d_geom=yes ac_cv_libSAMRAI2d_hier=yes ac_cv_libSAMRAI2d_math_std=yes ac_cv_libSAMRAI2d_mesh=yes ac_cv_libSAMRAI2d_pdat_std=yes ac_cv_libSAMRAI2d_solv=yes ac_cv_libSAMRAI2d_xfer=yes ac_cv_libSAMRAI3d_algs=yes ac_cv_libSAMRAI3d_appu=yes ac_cv_libSAMRAI3d_geom=yes ac_cv_libSAMRAI3d_hier=yes ac_cv_libSAMRAI3d_math_std=yes ac_cv_libSAMRAI3d_mesh=yes ac_cv_libSAMRAI3d_pdat_std=yes ac_cv_libSAMRAI3d_solv=yes ac_cv_libSAMRAI3d_xfer=yes ac_cv_libSAMRAI=yes ac_cv_libhdf5=yes ac_cv_libhdf5_hl=yes ac_cv_libmesh_opt=yes ac_cv_libnetcdf=no ac_cv_libpetsc=yes ac_cv_libsilo=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_LIBMESH_CONFIG=/home/asbhalla/softwares/libMesh-Git/linux-opt/bin/libmesh-config ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/usr/bin/dd ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='mpicc -E' ac_cv_prog_CXXCPP='mpicxx -E' ac_cv_prog_M4=m4 ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_CC=mpicc ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_fc_g=yes ac_cv_prog_fc_v=-v ac_cv_prog_make_make_set=yes acl_cv_hardcode_direct=no acl_cv_hardcode_libdir_flag_spec='${wl}-rpath ${wl}$libdir' acl_cv_hardcode_libdir_separator= acl_cv_hardcode_minus_L=no acl_cv_libext=a acl_cv_libname_spec='lib$name' acl_cv_library_names_spec='$libname$shrext' acl_cv_path_LD='/usr/bin/ld -m elf_x86_64' acl_cv_prog_gnu_ld=yes acl_cv_rpath=done acl_cv_shlibext=so acl_cv_wl=-Wl, am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_cxx_compile_cxx11=yes boost_cv_inc_path=/home/asbhalla/softwares/boost/1.67.0/include boost_cv_lib_version=1_67 lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' lt_cv_prog_compiler_pic_FC=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_compiler_static_works_FC=no lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /home/asbhalla/softwares/IBAMR-Git/IBAMR/config/missing aclocal-1.16' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='0' AM_V='$(V)' AR='ar' AUTOCONF='${SHELL} /home/asbhalla/softwares/IBAMR-Git/IBAMR/config/missing autoconf' AUTOHEADER='${SHELL} /home/asbhalla/softwares/IBAMR-Git/IBAMR/config/missing autoheader' AUTOMAKE='${SHELL} /home/asbhalla/softwares/IBAMR-Git/IBAMR/config/missing automake-1.16' AWK='gawk' BOOST_CPPFLAGS='-I/home/asbhalla/softwares/boost/1.67.0/include' BOOST_ROOT='' CC='mpicc' CCDEPMODE='depmode=gcc3' CFLAGS='-O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall' CPP='mpicc -E' CPPFLAGS='-I/home/asbhalla/softwares/SILO/include -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -DNDEBUG -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include ' CXX='mpicxx' CXXCPP='mpicxx -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 -g -O3 -Wall -std=gnu++14' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DISTCHECK_CONFIGURE_FLAGS=' '\''--with-boost=/home/asbhalla/softwares/boost/1.67.0'\''' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' EXEEXT='' F77='mpif90' FC='mpif90' FCFLAGS='-g -g -g -O3 -Wall' FCFLAGS_f='' FCLIBS=' -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl' FFLAGS='-g -O3 -Wall' FGREP='/usr/bin/grep -F' FLIBS=' -L/opt/mellanox/hcoll/lib -L/opt/mellanox/mxm/lib -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl' GREP='/usr/bin/grep' GSL_ENABLED_FALSE='' GSL_ENABLED_TRUE='#' GTEST_ENABLED_FALSE='' GTEST_ENABLED_TRUE='#' HAVE_CXX11='1' HAVE_LIBGSL='' HAVE_LIBGSLCBLAS='' HAVE_LIBGTEST='' HAVE_LIBHDF5='yes' HAVE_LIBHDF5_HL='yes' HAVE_LIBHYPRE='' HAVE_LIBMESH_DBG='' HAVE_LIBMESH_DEVEL='' HAVE_LIBMESH_OPROF='' HAVE_LIBMESH_OPT='yes' HAVE_LIBMESH_PROF='' HAVE_LIBMUPARSER='' HAVE_LIBNETCDF='no' HAVE_LIBPETSC='yes' HAVE_LIBSAMRAI2D_ALGS='yes' HAVE_LIBSAMRAI2D_APPU='yes' HAVE_LIBSAMRAI2D_GEOM='yes' HAVE_LIBSAMRAI2D_HIER='yes' HAVE_LIBSAMRAI2D_MATH_STD='yes' HAVE_LIBSAMRAI2D_MESH='yes' HAVE_LIBSAMRAI2D_PDAT_STD='yes' HAVE_LIBSAMRAI2D_SOLV='yes' HAVE_LIBSAMRAI2D_XFER='yes' HAVE_LIBSAMRAI3D_ALGS='yes' HAVE_LIBSAMRAI3D_APPU='yes' HAVE_LIBSAMRAI3D_GEOM='yes' HAVE_LIBSAMRAI3D_HIER='yes' HAVE_LIBSAMRAI3D_MATH_STD='yes' HAVE_LIBSAMRAI3D_MESH='yes' HAVE_LIBSAMRAI3D_PDAT_STD='yes' HAVE_LIBSAMRAI3D_SOLV='yes' HAVE_LIBSAMRAI3D_XFER='yes' HAVE_LIBSAMRAI='yes' HAVE_LIBSILO='yes' HAVE_LIBSILOH5='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='-L/home/asbhalla/softwares/SILO/lib -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib ' LIBGSL='' LIBGSLCBLAS='' LIBGSLCBLAS_PREFIX='' LIBGSL_PREFIX='' LIBGTEST='' LIBGTEST_PREFIX='' LIBHDF5='/home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib' LIBHDF5_HL='/home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib' LIBHDF5_HL_PREFIX='' LIBHDF5_PREFIX='' LIBHYPRE='' LIBHYPRE_PREFIX='' LIBMESH_CONFIG='env METHOD=opt /home/asbhalla/softwares/libMesh-Git/linux-opt/bin/libmesh-config' LIBMESH_DBG='' LIBMESH_DBG_PREFIX='' LIBMESH_DEVEL='' LIBMESH_DEVEL_PREFIX='' LIBMESH_ENABLED_FALSE='#' LIBMESH_ENABLED_TRUE='' LIBMESH_OPROF='' LIBMESH_OPROF_PREFIX='' LIBMESH_OPT='-lmesh_opt' LIBMESH_OPT_PREFIX='' LIBMESH_PROF='' LIBMESH_PROF_PREFIX='' LIBMUPARSER='$(abs_top_builddir)/ibtk/contrib/muparser/lib/libmuparser.a' LIBMUPARSER_PREFIX='' LIBNETCDF='' LIBNETCDF_PREFIX='' LIBOBJS='' LIBPETSC='-lpetsc' LIBPETSC_PREFIX='' LIBS='/home/asbhalla/softwares/SILO/lib/libsilo.a -lz -lm /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_appu.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_algs.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_solv.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_geom.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_mesh.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_math_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_pdat_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_xfer.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_hier.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_appu.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_algs.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_solv.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_geom.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_mesh.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_math_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_pdat_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_xfer.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_hier.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt $(abs_top_builddir)/ibtk/contrib/muparser/lib/libmuparser.a ' LIBSAMRAI2D_ALGS='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_algs.a' LIBSAMRAI2D_ALGS_PREFIX='' LIBSAMRAI2D_APPU='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_appu.a' LIBSAMRAI2D_APPU_PREFIX='' LIBSAMRAI2D_GEOM='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_geom.a' LIBSAMRAI2D_GEOM_PREFIX='' LIBSAMRAI2D_HIER='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_hier.a' LIBSAMRAI2D_HIER_PREFIX='' LIBSAMRAI2D_MATH_STD='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_math_std.a' LIBSAMRAI2D_MATH_STD_PREFIX='' LIBSAMRAI2D_MESH='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_mesh.a' LIBSAMRAI2D_MESH_PREFIX='' LIBSAMRAI2D_PDAT_STD='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_pdat_std.a' LIBSAMRAI2D_PDAT_STD_PREFIX='' LIBSAMRAI2D_SOLV='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_solv.a' LIBSAMRAI2D_SOLV_PREFIX='' LIBSAMRAI2D_XFER='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_xfer.a' LIBSAMRAI2D_XFER_PREFIX='' LIBSAMRAI3D_ALGS='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_algs.a' LIBSAMRAI3D_ALGS_PREFIX='' LIBSAMRAI3D_APPU='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_appu.a' LIBSAMRAI3D_APPU_PREFIX='' LIBSAMRAI3D_GEOM='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_geom.a' LIBSAMRAI3D_GEOM_PREFIX='' LIBSAMRAI3D_HIER='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_hier.a' LIBSAMRAI3D_HIER_PREFIX='' LIBSAMRAI3D_MATH_STD='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_math_std.a' LIBSAMRAI3D_MATH_STD_PREFIX='' LIBSAMRAI3D_MESH='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_mesh.a' LIBSAMRAI3D_MESH_PREFIX='' LIBSAMRAI3D_PDAT_STD='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_pdat_std.a' LIBSAMRAI3D_PDAT_STD_PREFIX='' LIBSAMRAI3D_SOLV='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_solv.a' LIBSAMRAI3D_SOLV_PREFIX='' LIBSAMRAI3D_XFER='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_xfer.a' LIBSAMRAI3D_XFER_PREFIX='' LIBSAMRAI='/home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI.a' LIBSAMRAI_PREFIX='' LIBSILO='/home/asbhalla/softwares/SILO/lib/libsilo.a -lz -lm' LIBSILOH5='' LIBSILOH5_PREFIX='' LIBSILO_PREFIX='' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBGSL='' LTLIBGSLCBLAS='' LTLIBGTEST='' LTLIBHDF5='-L/home/asbhalla/softwares/HDF5/lib -lhdf5 -lz -ldl -lm -R/home/asbhalla/softwares/HDF5/lib' LTLIBHDF5_HL='-L/home/asbhalla/softwares/HDF5/lib -lhdf5_hl -L/home/asbhalla/softwares/HDF5/lib -lhdf5 -lz -ldl -lm -R/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -R/home/asbhalla/softwares/HDF5/lib' LTLIBHYPRE='' LTLIBMESH_DBG='' LTLIBMESH_DEVEL='' LTLIBMESH_OPROF='' LTLIBMESH_OPT='-lmesh_opt' LTLIBMESH_PROF='' LTLIBMUPARSER='' LTLIBNETCDF='' LTLIBOBJS='' LTLIBPETSC='-lpetsc' LTLIBSAMRAI2D_ALGS='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_algs' LTLIBSAMRAI2D_APPU='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_appu' LTLIBSAMRAI2D_GEOM='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_geom' LTLIBSAMRAI2D_HIER='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_hier' LTLIBSAMRAI2D_MATH_STD='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_math_std' LTLIBSAMRAI2D_MESH='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_mesh' LTLIBSAMRAI2D_PDAT_STD='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_pdat_std' LTLIBSAMRAI2D_SOLV='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_solv' LTLIBSAMRAI2D_XFER='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI2d_xfer' LTLIBSAMRAI3D_ALGS='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_algs' LTLIBSAMRAI3D_APPU='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_appu' LTLIBSAMRAI3D_GEOM='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_geom' LTLIBSAMRAI3D_HIER='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_hier' LTLIBSAMRAI3D_MATH_STD='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_math_std' LTLIBSAMRAI3D_MESH='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_mesh' LTLIBSAMRAI3D_PDAT_STD='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_pdat_std' LTLIBSAMRAI3D_SOLV='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_solv' LTLIBSAMRAI3D_XFER='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI3d_xfer' LTLIBSAMRAI='-L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -lSAMRAI' LTLIBSILO='-L/home/asbhalla/softwares/SILO/lib -lsilo -lz -lm' LTLIBSILOH5='' LT_SYS_LIBRARY_PATH='' M4='m4' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /home/asbhalla/softwares/IBAMR-Git/IBAMR/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/usr/bin/mkdir -p' MPICC='' MPICXX='' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='IBAMR' PACKAGE_BUGREPORT='boyceg@gmail.com' PACKAGE_CFLAGS='-O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 ' PACKAGE_CONTRIB_LIBS='$(abs_top_builddir)/ibtk/contrib/muparser/lib/libmuparser.a ' PACKAGE_CPPFLAGS='-I/home/asbhalla/softwares/SILO/include -I/home/asbhalla/softwares/SAMRAI/linux-opt/include -DNDEBUG -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/IBAMR-Git/IBAMR/ibtk/contrib/muparser/include -I/home/asbhalla/softwares/HDF5/include -I/home/asbhalla/softwares/libMesh-Git/linux-opt -I/home/asbhalla/softwares/libMesh-Git/linux-opt/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/include -I/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/home/asbhalla/softwares/boost/1.67.0/include -DNDEBUG -I/home/asbhalla/softwares/boost/1.67.0/include ' PACKAGE_CXXFLAGS='-Kc++eh -Krtti -O2 -Ob2 -tpp6 -axiMK -unroll -w0 -vec_report0 -par_report0 -openmp_report0 ' PACKAGE_FCFLAGS='-g ' PACKAGE_LDFLAGS='-L/home/asbhalla/softwares/SILO/lib -L/home/asbhalla/softwares/SAMRAI/linux-opt/lib -L/home/asbhalla/softwares/HDF5/lib ' PACKAGE_LIBS='/home/asbhalla/softwares/SILO/lib/libsilo.a -lz -lm /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_appu.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_algs.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_solv.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_geom.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_mesh.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_math_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_pdat_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_xfer.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI3d_hier.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_appu.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_algs.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_solv.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_geom.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_mesh.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_math_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_pdat_std.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_xfer.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI2d_hier.a /home/asbhalla/softwares/SAMRAI/linux-opt/lib/libSAMRAI.a -L${PETSC_DIR}/${PETSC_ARCH}/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lstdc++ -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl /home/asbhalla/softwares/HDF5/lib/libhdf5_hl.so /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib /home/asbhalla/softwares/HDF5/lib/libhdf5.so -lz -ldl -lm -Wl,-rpath -Wl,/home/asbhalla/softwares/HDF5/lib -lhdf5 -lhdf5_cpp -lz -L/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/home/asbhalla/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -Wl,-rpath,/opt/intel/mkl/lib/intel64 -L/opt/intel/mkl/lib/intel64 -Wl,-rpath,/opt/mellanox/hcoll/lib -L/opt/mellanox/hcoll/lib -Wl,-rpath,/opt/mellanox/mxm/lib -L/opt/mellanox/mxm/lib -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/tbb/lib/intel64/gcc4.4 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/mkl/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2018.2.199/linux/ipp/lib/intel64 -Wl,-rpath,/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2018.2.199/linux/compiler/lib/intel64_lin -lpetsc -lHYPRE -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcoremt_pic -limf -lsvml -lm -lipgo -lirc -lpthread -lgcc_s -lirc_s -lstdc++ -ldl -L/lib -Wl,-rpath,/lib -Wl,-rpath,/usr/local/mpi/intel/openmpi-4.0.0/lib64 -L/usr/local/mpi/intel/openmpi-4.0.0/lib64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -Wl,-rpath,/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -L/home/asbhalla/softwares/libMesh-Git/linux-opt/lib -lmesh_opt ' PACKAGE_NAME='IBAMR' PACKAGE_STRING='IBAMR 171104' PACKAGE_TARNAME='IBAMR' PACKAGE_URL='https://ibamr.github.io' PACKAGE_VERSION='171104' PATH_SEPARATOR=':' PETSC_ARCH='linux-opt' PETSC_DIR='/home/asbhalla/softwares/PETSc-BitBucket/PETSc' RANLIB='ranlib' SAMRAI2D_ENABLED_FALSE='#' SAMRAI2D_ENABLED_TRUE='' SAMRAI3D_ENABLED_FALSE='#' SAMRAI3D_ENABLED_TRUE='' SAMRAI_DIR='/home/asbhalla/softwares/SAMRAI/linux-opt' SAMRAI_FORTDIR='/home/asbhalla/softwares/SAMRAI/linux-opt/include' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' SILO_ENABLED_FALSE='#' SILO_ENABLED_TRUE='' STRIP='strip' USING_BUNDLED_EIGEN_FALSE='' USING_BUNDLED_EIGEN_TRUE='#' USING_BUNDLED_MUPARSER_FALSE='#' USING_BUNDLED_MUPARSER_TRUE='' VERSION='171104' ac_ct_AR='ar' ac_ct_CC='mpicc' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc=' -I$(srcdir)' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/asbhalla/softwares/IBAMR-Git/IBAMR/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' ibtk' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "IBAMR" #define PACKAGE_TARNAME "IBAMR" #define PACKAGE_VERSION "171104" #define PACKAGE_STRING "IBAMR 171104" #define PACKAGE_BUGREPORT "boyceg@gmail.com" #define PACKAGE_URL "https://ibamr.github.io" #define PACKAGE "IBAMR" #define VERSION "171104" #define HAVE_CXX11 1 #define FC_FUNC(name,NAME) name ## _ #define FC_FUNC_(name,NAME) name ## _ #define HAVE_MPI 1 #define HAVE_MPI 1 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define STDC_HEADERS 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_BUILTIN_EXPECT 1 #define HAVE_BUILTIN_PREFETCH 1 #define VERSION_MAJOR 1 #define VERSION_MINOR 0 #define VERSION_SUBMINOR 0 #define HAVE_BOOST 1 #define HAVE_LIBMESH_OPT 1 #define HAVE_LIBMESH 1 #define HAVE_LIBHDF5 1 #define HAVE_LIBHDF5_HL 1 #define HAVE_LIBMUPARSER 1 #define HAVE_LIBPETSC 1 #define HAVE_LIBSAMRAI 1 #define HAVE_LIBSAMRAI2D_HIER 1 #define HAVE_LIBSAMRAI2D_XFER 1 #define HAVE_LIBSAMRAI2D_PDAT_STD 1 #define HAVE_LIBSAMRAI2D_MATH_STD 1 #define HAVE_LIBSAMRAI2D_MESH 1 #define HAVE_LIBSAMRAI2D_GEOM 1 #define HAVE_LIBSAMRAI2D_SOLV 1 #define HAVE_LIBSAMRAI2D_ALGS 1 #define HAVE_LIBSAMRAI2D_APPU 1 #define HAVE_LIBSAMRAI3D_HIER 1 #define HAVE_LIBSAMRAI3D_XFER 1 #define HAVE_LIBSAMRAI3D_PDAT_STD 1 #define HAVE_LIBSAMRAI3D_MATH_STD 1 #define HAVE_LIBSAMRAI3D_MESH 1 #define HAVE_LIBSAMRAI3D_GEOM 1 #define HAVE_LIBSAMRAI3D_SOLV 1 #define HAVE_LIBSAMRAI3D_ALGS 1 #define HAVE_LIBSAMRAI3D_APPU 1 #define HAVE_LIBSILO 1 #define HAVE_SILO 1 configure: exit 0