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<p>Hi, Junchao,</p>
<p>I have installed the newest version of PETSc and it works fine. I
just get the following memory leak warning:</p>
Direct leak of 28608 byte(s) in 12 object(s) allocated from:<br>
#0 0x7f1ddd5caa38 in __interceptor_memalign
../../../../gcc-8.1.0/libsanitizer/asan/asan_malloc_linux.cc:111<br>
#1 0x7f1ddbef1213 in PetscMallocAlign
(/opt/PETSc_library/petsc-3.10.4/mcr_20190313/lib/libpetsc.so.3.10+0x150213)<br>
<p>Thank you,</p>
<p>Manuel</p>
<p>---<br>
</p>
<div class="moz-cite-prefix">On 3/12/19 7:08 PM, Zhang, Junchao
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:CA+MQGp_wkEinEh6piEPmyA6z03V=dyyCTuWNz9A5FuXXnDTm9A@mail.gmail.com">
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<div>Hi, Manuel,</div>
I recently fixed a problem in VecRestoreArrayRead. Basically,
I added VecRestoreArrayRead_Nest. Could you try the master
branch of PETSc to see if it fixes your problem?
<div> Thanks.<br>
<div><br clear="all">
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<div dir="ltr" class="gmail_signature"
data-smartmail="gmail_signature">
<div dir="ltr">--Junchao Zhang</div>
</div>
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<br>
<div class="gmail_quote">
<div dir="ltr" class="gmail_attr">On Mon, Mar 11, 2019 at 6:56
AM Manuel Colera Rico via petsc-users <<a
href="mailto:petsc-users@mcs.anl.gov" moz-do-not-send="true">petsc-users@mcs.anl.gov</a>>
wrote:<br>
</div>
<blockquote class="gmail_quote" style="margin:0px 0px 0px
0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
Hello,<br>
<br>
I need to solve a 2*2 block linear system. The matrices A_00,
A_01, <br>
A_10, A_11 are constructed separately via
MatCreateSeqAIJWithArrays and <br>
MatCreateSeqSBAIJWithArrays. Then, I construct the full system
matrix <br>
with MatCreateNest, and use MatNestGetISs and
PCFieldSplitSetIS to set <br>
up the PC, trying to follow the procedure described here: <br>
<a
href="https://www.mcs.anl.gov/petsc/petsc-current/src/snes/examples/tutorials/ex70.c.html"
rel="noreferrer" target="_blank" moz-do-not-send="true">https://www.mcs.anl.gov/petsc/petsc-current/src/snes/examples/tutorials/ex70.c.html</a>.<br>
<br>
However, when I run the code with Leak Sanitizer, I get the
following error:<br>
<br>
=================================================================<br>
==54927==ERROR: AddressSanitizer: attempting free on address
which was <br>
not malloc()-ed: 0x627000051ab8 in thread T0<br>
#0 0x7fbd95c08f30 in __interceptor_free <br>
../../../../gcc-8.1.0/libsanitizer/asan/asan_malloc_linux.cc:66<br>
#1 0x7fbd92b99dcd in PetscFreeAlign <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0x146dcd)<br>
#2 0x7fbd92ce0178 in VecRestoreArray_Nest <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0x28d178)<br>
#3 0x7fbd92cd627d in VecRestoreArrayRead <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0x28327d)<br>
#4 0x7fbd92d1189e in VecScatterBegin_SSToSS <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0x2be89e)<br>
#5 0x7fbd92d1a414 in VecScatterBegin <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0x2c7414)<br>
#6 0x7fbd934a999c in PCApply_FieldSplit <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0xa5699c)<br>
#7 0x7fbd93369071 in PCApply <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0x916071)<br>
#8 0x7fbd934efe77 in KSPInitialResidual <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0xa9ce77)<br>
#9 0x7fbd9350272c in KSPSolve_GMRES <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0xaaf72c)<br>
#10 0x7fbd934e3c01 in KSPSolve <br>
(/opt/PETSc_library/petsc/manuel_OpenBLAS_petsc/lib/libpetsc.so.3.8+0xa90c01)<br>
<br>
Disabling Leak Sanitizer also outputs an "invalid pointer"
error.<br>
<br>
Did I forget something when writing the code?<br>
<br>
Thank you,<br>
<br>
Manuel<br>
<br>
---<br>
<br>
</blockquote>
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