[1]PETSC ERROR: ------------------------------------------------------------------------ [1]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation, probably memory access out of range [1]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [1]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [1]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [1]PETSC ERROR: likely location of problem given in stack below [1]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [1]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [1]PETSC ERROR: INSTEAD the line number of the start of the function [1]PETSC ERROR: is given. [1]PETSC ERROR: [1] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [1]PETSC ERROR: [1] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [1]PETSC ERROR: [1] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [1]PETSC ERROR: [1] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [1]PETSC ERROR: [1] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [1]PETSC ERROR: [1] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [1]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [1]PETSC ERROR: Signal received [1]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [1]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [1]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [1]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [1]PETSC ERROR: #1 User provided function() line 0 in unknown file -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 59. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- [15]PETSC ERROR: ------------------------------------------------------------------------ [15]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [15]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [15]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [15]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [15]PETSC ERROR: likely location of problem given in stack below [15]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [15]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [15]PETSC ERROR: INSTEAD the line number of the start of the function [15]PETSC ERROR: is given. [15]PETSC ERROR: [15] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [15]PETSC ERROR: [15] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [15]PETSC ERROR: [15] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [15]PETSC ERROR: [15] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [15]PETSC ERROR: [15] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [15]PETSC ERROR: [15] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [15]PETSC ERROR: [15] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [15]PETSC ERROR: [15] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [15]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [15]PETSC ERROR: Signal received [15]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [15]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [15]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [15]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [15]PETSC ERROR: #1 User provided function() line 0 in unknown file [0]PETSC ERROR: ------------------------------------------------------------------------ [0]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [0]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [0]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [0]PETSC ERROR: likely location of problem given in stack below [0]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [0]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [0]PETSC ERROR: INSTEAD the line number of the start of the function [0]PETSC ERROR: is given. [0]PETSC ERROR: [0] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [0]PETSC ERROR: [0] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [0]PETSC ERROR: [0] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [0]PETSC ERROR: [0] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [0]PETSC ERROR: [0] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [0]PETSC ERROR: [0] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [0]PETSC ERROR: [0] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [0]PETSC ERROR: [0] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [0]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [0]PETSC ERROR: Signal received [0]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [0]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [0]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [0]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [0]PETSC ERROR: #1 User provided function() line 0 in unknown file [2]PETSC ERROR: ------------------------------------------------------------------------ [2]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [2]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [2]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [2]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [2]PETSC ERROR: likely location of problem given in stack below [2]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [2]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [2]PETSC ERROR: INSTEAD the line number of the start of the function [2]PETSC ERROR: is given. [2]PETSC ERROR: [2] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [2]PETSC ERROR: [2] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [2]PETSC ERROR: [2] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [2]PETSC ERROR: [2] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [2]PETSC ERROR: [2] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [2]PETSC ERROR: [2] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [2]PETSC ERROR: [2] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [2]PETSC ERROR: [2] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [2]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [2]PETSC ERROR: Signal received [2]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [2]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [2]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [2]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [2]PETSC ERROR: #1 User provided function() line 0 in unknown file [3]PETSC ERROR: ------------------------------------------------------------------------ [3]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [3]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [3]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [3]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [3]PETSC ERROR: likely location of problem given in stack below [3]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [3]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [3]PETSC ERROR: INSTEAD the line number of the start of the function [3]PETSC ERROR: is given. [3]PETSC ERROR: [3] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [3]PETSC ERROR: [3] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [3]PETSC ERROR: [3] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [3]PETSC ERROR: [3] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [3]PETSC ERROR: [3] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [3]PETSC ERROR: [3] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [3]PETSC ERROR: [3] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [3]PETSC ERROR: [3] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [3]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [3]PETSC ERROR: Signal received [3]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [3]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [3]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [3]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [3]PETSC ERROR: #1 User provided function() line 0 in unknown file [4]PETSC ERROR: ------------------------------------------------------------------------ [4]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [4]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [4]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [4]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [4]PETSC ERROR: likely location of problem given in stack below [4]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [4]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [4]PETSC ERROR: INSTEAD the line number of the start of the function [4]PETSC ERROR: is given. [4]PETSC ERROR: [4] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [4]PETSC ERROR: [4] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [4]PETSC ERROR: [4] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [4]PETSC ERROR: [4] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [4]PETSC ERROR: [4] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [4]PETSC ERROR: [4] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [4]PETSC ERROR: [4] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [4]PETSC ERROR: [4] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [4]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [4]PETSC ERROR: Signal received [4]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [4]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [4]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [4]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [4]PETSC ERROR: #1 User provided function() line 0 in unknown file [5]PETSC ERROR: ------------------------------------------------------------------------ [5]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [5]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [5]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [5]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [5]PETSC ERROR: likely location of problem given in stack below [5]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [5]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [5]PETSC ERROR: INSTEAD the line number of the start of the function [5]PETSC ERROR: is given. [5]PETSC ERROR: [5] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [5]PETSC ERROR: [5] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [5]PETSC ERROR: [5] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [5]PETSC ERROR: [5] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [5]PETSC ERROR: [5] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [5]PETSC ERROR: [5] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [5]PETSC ERROR: [5] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [5]PETSC ERROR: [5] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [5]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [5]PETSC ERROR: Signal received [5]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [5]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [5]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [5]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [5]PETSC ERROR: #1 User provided function() line 0 in unknown file [6]PETSC ERROR: ------------------------------------------------------------------------ [6]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [6]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [6]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [6]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [6]PETSC ERROR: likely location of problem given in stack below [6]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [6]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [6]PETSC ERROR: INSTEAD the line number of the start of the function [6]PETSC ERROR: is given. [6]PETSC ERROR: [6] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [6]PETSC ERROR: [6] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [6]PETSC ERROR: [6] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [6]PETSC ERROR: [6] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [6]PETSC ERROR: [6] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [6]PETSC ERROR: [6] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [6]PETSC ERROR: [6] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [6]PETSC ERROR: [6] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [6]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [6]PETSC ERROR: Signal received [6]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [6]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [6]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [6]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [6]PETSC ERROR: #1 User provided function() line 0 in unknown file [7]PETSC ERROR: ------------------------------------------------------------------------ [7]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [7]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [7]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [7]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [7]PETSC ERROR: likely location of problem given in stack below [7]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [7]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [7]PETSC ERROR: INSTEAD the line number of the start of the function [7]PETSC ERROR: is given. [7]PETSC ERROR: [7] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [7]PETSC ERROR: [7] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [7]PETSC ERROR: [7] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [7]PETSC ERROR: [7] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [7]PETSC ERROR: [7] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [7]PETSC ERROR: [7] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [7]PETSC ERROR: [7] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [7]PETSC ERROR: [7] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [7]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [7]PETSC ERROR: Signal received [7]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [7]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [7]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [7]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [7]PETSC ERROR: #1 User provided function() line 0 in unknown file [8]PETSC ERROR: ------------------------------------------------------------------------ [8]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [8]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [8]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [8]PETSC ERROR: likely location of problem given in stack below [8]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [8]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [8]PETSC ERROR: INSTEAD the line number of the start of the function [8]PETSC ERROR: is given. [8]PETSC ERROR: [8] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [8]PETSC ERROR: [8] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [8]PETSC ERROR: [8] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [8]PETSC ERROR: [8] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [8]PETSC ERROR: [8] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [8]PETSC ERROR: [8] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [8]PETSC ERROR: [8] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [8]PETSC ERROR: [8] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [8]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [8]PETSC ERROR: Signal received [8]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [8]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [8]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [8]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [8]PETSC ERROR: #1 User provided function() line 0 in unknown file [9]PETSC ERROR: ------------------------------------------------------------------------ [9]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [9]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [9]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [9]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [9]PETSC ERROR: likely location of problem given in stack below [9]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [9]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [9]PETSC ERROR: INSTEAD the line number of the start of the function [9]PETSC ERROR: is given. [9]PETSC ERROR: [9] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [9]PETSC ERROR: [9] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [9]PETSC ERROR: [9] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [9]PETSC ERROR: [9] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [9]PETSC ERROR: [9] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [9]PETSC ERROR: [9] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [9]PETSC ERROR: [9] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [9]PETSC ERROR: [9] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [9]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [9]PETSC ERROR: Signal received [9]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [9]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [9]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [9]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [9]PETSC ERROR: #1 User provided function() line 0 in unknown file [10]PETSC ERROR: ------------------------------------------------------------------------ [10]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [10]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [10]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [10]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [10]PETSC ERROR: likely location of problem given in stack below [10]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [10]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [10]PETSC ERROR: INSTEAD the line number of the start of the function [10]PETSC ERROR: is given. [10]PETSC ERROR: [10] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [10]PETSC ERROR: [10] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [10]PETSC ERROR: [10] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [10]PETSC ERROR: [10] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [10]PETSC ERROR: [10] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [10]PETSC ERROR: [10] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [10]PETSC ERROR: [10] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [10]PETSC ERROR: [10] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [10]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [10]PETSC ERROR: Signal received [10]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [10]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [10]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [10]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [10]PETSC ERROR: #1 User provided function() line 0 in unknown file [11]PETSC ERROR: ------------------------------------------------------------------------ [11]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [11]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [11]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [11]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [11]PETSC ERROR: likely location of problem given in stack below [11]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [11]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [11]PETSC ERROR: INSTEAD the line number of the start of the function [11]PETSC ERROR: is given. [11]PETSC ERROR: [11] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [11]PETSC ERROR: [11] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [11]PETSC ERROR: [11] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [11]PETSC ERROR: [11] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [11]PETSC ERROR: [11] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [11]PETSC ERROR: [11] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [11]PETSC ERROR: [11] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [11]PETSC ERROR: [11] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [11]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [11]PETSC ERROR: Signal received [11]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [11]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [11]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [11]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [11]PETSC ERROR: #1 User provided function() line 0 in unknown file [12]PETSC ERROR: ------------------------------------------------------------------------ [12]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [12]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [12]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [12]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [12]PETSC ERROR: likely location of problem given in stack below [12]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [12]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [12]PETSC ERROR: INSTEAD the line number of the start of the function [12]PETSC ERROR: is given. [12]PETSC ERROR: [12] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [12]PETSC ERROR: [12] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [12]PETSC ERROR: [12] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [12]PETSC ERROR: [12] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [12]PETSC ERROR: [12] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [12]PETSC ERROR: [12] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [12]PETSC ERROR: [12] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [12]PETSC ERROR: [12] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [12]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [12]PETSC ERROR: Signal received [12]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [12]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [12]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [12]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [12]PETSC ERROR: #1 User provided function() line 0 in unknown file [13]PETSC ERROR: ------------------------------------------------------------------------ [13]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [13]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [13]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [13]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [13]PETSC ERROR: likely location of problem given in stack below [13]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [13]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [13]PETSC ERROR: INSTEAD the line number of the start of the function [13]PETSC ERROR: is given. [13]PETSC ERROR: [13] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [13]PETSC ERROR: [13] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [13]PETSC ERROR: [13] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [13]PETSC ERROR: [13] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [13]PETSC ERROR: [13] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [13]PETSC ERROR: [13] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [13]PETSC ERROR: [13] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [13]PETSC ERROR: [13] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [13]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [13]PETSC ERROR: Signal received [13]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [13]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [13]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [13]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [13]PETSC ERROR: #1 User provided function() line 0 in unknown file [14]PETSC ERROR: ------------------------------------------------------------------------ [14]PETSC ERROR: Caught signal number 15 Terminate: Some process (or the batch system) has told this process to end [14]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger [14]PETSC ERROR: or see http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind [14]PETSC ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to find memory corruption errors [14]PETSC ERROR: likely location of problem given in stack below [14]PETSC ERROR: --------------------- Stack Frames ------------------------------------ [14]PETSC ERROR: Note: The EXACT line numbers in the stack are not available, [14]PETSC ERROR: INSTEAD the line number of the start of the function [14]PETSC ERROR: is given. [14]PETSC ERROR: [14] PetscCommGetNewTag line 76 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [14]PETSC ERROR: [14] PetscObjectGetNewTag line 43 /home/dlee0035/soft/petsc-3.9.3/src/sys/objects/tagm.c [14]PETSC ERROR: [14] MatCreateSubMatrices_MPIAIJ_SingleIS_Local line 1269 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiov.c [14]PETSC ERROR: [14] MatCreateSubMatrix_MPIAIJ_nonscalable line 3678 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [14]PETSC ERROR: [14] MatCreateSubMatrix_MPIAIJ line 3264 /home/dlee0035/soft/petsc-3.9.3/src/mat/impls/aij/mpi/mpiaij.c [14]PETSC ERROR: [14] MatCreateSubMatrix line 7780 /home/dlee0035/soft/petsc-3.9.3/src/mat/interface/matrix.c [14]PETSC ERROR: [14] PCSetUp_FieldSplit line 470 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/impls/fieldsplit/fieldsplit.c [14]PETSC ERROR: [14] PCSetUp line 885 /home/dlee0035/soft/petsc-3.9.3/src/ksp/pc/interface/precon.c [14]PETSC ERROR: --------------------- Error Message -------------------------------------------------------------- [14]PETSC ERROR: Signal received [14]PETSC ERROR: See http://www.mcs.anl.gov/petsc/documentation/faq.html for trouble shooting. [14]PETSC ERROR: Petsc Release Version 3.9.3, Jul, 02, 2018 [14]PETSC ERROR: ../build/rpo on a named semtex by dlee0035 Thu Jan 31 15:52:47 2019 [14]PETSC ERROR: Configure options --prefix=/home/dlee0035/soft/ --with-blas-lib=/home/dlee0035/soft/lib/libopenblas.so --with-lapack-lib=/home/dlee0035/soft/lib/libopenblas.so --with-mpi-dir=/home/dlee0035/soft/ [14]PETSC ERROR: #1 User provided function() line 0 in unknown file