Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Wed Dec 20 22:25:09 2017 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-scalar-type=complex --with-mumps=1 --download-mumps --download-parmetis --download-metis --download-scalapack Working directory: /space/hpc-home/trianas/petsc-3.8.3 Machine platform: ('Linux', 'hpca-n00', '3.0.101-0.47.52.1.8418.0.PTF-default', '#1 SMP Tue Apr 21 18:42:23 UTC 2015 ()', 'x86_64', 'x86_64') Python version: 2.7.10 (default, Dec 3 2015, 14:35:16) [GCC 4.3.4 [gcc-4_3-branch revision 152973]] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/framework.py:841) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:841) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /space/hpc-home/trianas/lions_env2/bin/gdb...not found Checking for program /home/trianas/.local/bin/gdb...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/gdb...not found Checking for program /space/hpc-apps/obs/python-2.7.10/bin/gdb...not found Checking for program /sw/sdev/gcc/x86_64/4.9.2/bin/gdb...not found Checking for program /sw/sdev/binutils/x86_64/2.22/bin/gdb...not found Checking for program /opt/sgi/sbin/gdb...not found Checking for program /opt/sgi/bin/gdb...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/bin/intel64/gdb...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/gdb/intel64/gdb...not found Checking for program /space/hpc-apps/common/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /space/hpc-home/trianas/lions_env2/bin/dbx...not found Checking for program /home/trianas/.local/bin/dbx...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/dbx...not found Checking for program /space/hpc-apps/obs/python-2.7.10/bin/dbx...not found Checking for program /sw/sdev/gcc/x86_64/4.9.2/bin/dbx...not found Checking for program /sw/sdev/binutils/x86_64/2.22/bin/dbx...not found Checking for program /opt/sgi/sbin/dbx...not found Checking for program /opt/sgi/bin/dbx...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/bin/intel64/dbx...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/gdb/intel64/dbx...not found Checking for program /space/hpc-apps/common/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/X11/dbx...not found Checking for program /usr/X11R6/bin/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /opt/c3/bin/dbx...not found Checking for program /usr/lib/mit/bin/dbx...not found Checking for program /usr/lib/mit/sbin/dbx...not found Checking for program /space/pbspro/pbs_exec/default/bin/dbx...not found Checking for program /space/pbspro/pbs_exec/default/sbin/dbx...not found Checking for program ./dbx...not found Checking for program /home/trianas/dbx...not found Checking for program /space/hpc-home/trianas/lions_env2/bin/xdb...not found Checking for program /home/trianas/.local/bin/xdb...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/xdb...not found Checking for program /space/hpc-apps/obs/python-2.7.10/bin/xdb...not found Checking for program /sw/sdev/gcc/x86_64/4.9.2/bin/xdb...not found Checking for program /sw/sdev/binutils/x86_64/2.22/bin/xdb...not found Checking for program /opt/sgi/sbin/xdb...not found Checking for program /opt/sgi/bin/xdb...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/bin/intel64/xdb...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/gdb/intel64/xdb...not found Checking for program /space/hpc-apps/common/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/X11/xdb...not found Checking for program /usr/X11R6/bin/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /opt/c3/bin/xdb...not found Checking for program /usr/lib/mit/bin/xdb...not found Checking for program /usr/lib/mit/sbin/xdb...not found Checking for program /space/pbspro/pbs_exec/default/bin/xdb...not found Checking for program /space/pbspro/pbs_exec/default/sbin/xdb...not found Checking for program ./xdb...not found Checking for program /home/trianas/xdb...not found Checking for program /space/hpc-home/trianas/lions_env2/bin/dsymutil...not found Checking for program /home/trianas/.local/bin/dsymutil...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/dsymutil...not found Checking for program /space/hpc-apps/obs/python-2.7.10/bin/dsymutil...not found Checking for program /sw/sdev/gcc/x86_64/4.9.2/bin/dsymutil...not found Checking for program /sw/sdev/binutils/x86_64/2.22/bin/dsymutil...not found Checking for program /opt/sgi/sbin/dsymutil...not found Checking for program /opt/sgi/bin/dsymutil...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/bin/intel64/dsymutil...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/gdb/intel64/dsymutil...not found Checking for program /space/hpc-apps/common/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/bin/X11/dsymutil...not found Checking for program /usr/X11R6/bin/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /opt/c3/bin/dsymutil...not found Checking for program /usr/lib/mit/bin/dsymutil...not found Checking for program /usr/lib/mit/sbin/dsymutil...not found Checking for program /space/pbspro/pbs_exec/default/bin/dsymutil...not found Checking for program /space/pbspro/pbs_exec/default/sbin/dsymutil...not found Checking for program ./dsymutil...not found Checking for program /home/trianas/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /space/hpc-home/trianas/lions_env2/bin/git...not found Checking for program /home/trianas/.local/bin/git...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/git...not found Checking for program /space/hpc-apps/obs/python-2.7.10/bin/git...not found Checking for program /sw/sdev/gcc/x86_64/4.9.2/bin/git...not found Checking for program /sw/sdev/binutils/x86_64/2.22/bin/git...not found Checking for program /opt/sgi/sbin/git...not found Checking for program /opt/sgi/bin/git...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/bin/intel64/git...not found Checking for program /sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/gdb/intel64/git...not found Checking for program /space/hpc-apps/common/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.7.12.4 ================================================================================ TEST configureMercurial from config.sourceControl(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /space/hpc-home/trianas/lions_env2/bin/hg...not found Checking for program /home/trianas/.local/bin/hg...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/hg...not found Checking for program /space/hpc-apps/obs/python-2.7.10/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 3.7.3) ================================================================================ TEST configureCLanguage from PETSc.options.languages(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 8 #define PETSC_VERSION_SUBMINOR 3 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Dec, 09, 2017" #define PETSC_VERSION_GIT "v3.8.3" #define PETSC_VERSION_DATE_GIT "2017-12-09 22:33:04 -0600" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/space/hpc-home/trianas/petsc-3.8.3" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation ================================================================================ TEST configureArchitecture from PETSc.options.arch(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/arch.py:36) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:36) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-linux2-c-debug"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/installDir.py:75) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:75) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/installDir.py:68) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:68) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/installDir.py:52) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:52) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /space/hpc-home/trianas/petsc-3.8.3/arch-linux2-c-debug/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/installDir.py:88) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:88) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/space/hpc-home/trianas/petsc-3.8.3/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1612) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1612) **** printenv **** LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32: LESS=-M -I PBS_NODENUM=0 PBS_O_LANG=en_US.UTF-8 XKEYSYMDB=/usr/share/X11/XKeysymDB INFOPATH=/usr/local/info:/usr/share/info:/usr/info VIRTUAL_ENV=/space/hpc-home/trianas/lions_env2 SHELL=/usr/bin/sh MIC_LD_LIBRARY_PATH=/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl/lib/mic:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/compiler/lib/mic:/opt/intel/mic/myo/lib:/opt/intel/mic/coi/device-linux-release/lib XDG_DATA_DIRS=/usr/share:/etc/opt/kde3/share:/opt/kde3/share HISTSIZE=1000 LESS_ADVANCED_PREPROCESSOR=no MANPATH=/opt/sgi/mpt/mpt-2.12/man:/space/hpc-apps/obs/python-2.7.10/share/man:/sw/sdev/gcc/x86_64/4.9.2/man:/sw/sdev/binutils/x86_64/2.22/man:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/man/en_US:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/man/en_US:/usr/local/man:/usr/share/man:/opt/intel/mic/man:/opt/c3/man:/space/pbspro/pbs_exec/default/man:/opt/sgi/share/man:/usr/share/catman:/usr/catman:/usr/man PROFILEREAD=true PYTHONPATH= FPATH=/space/hpc-apps/obs/ATLAS/include:/opt/sgi/mpt/mpt-2.12/include:/space/hpc-apps/obs/python-2.7.10/include:/sw/sdev/gcc/x86_64/4.9.2/include:/sw/sdev/mpc/x86_64/0.8.2/include:/sw/sdev/mpfr/x86_64/3.1.0/include:/sw/sdev/gmp/x86_64/5.0.4/include:/sw/sdev/binutils/x86_64/2.22/include:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl/include/intel64/lp64 PBS_NODEFILE=/var/spool/PBS/aux/3111462.hpc-pbs MKLROOT=/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl HOSTNAME=hpca-n00 PBS_QUEUE=short PBS_JOBID=3111462.hpc-pbs MAIL=/var/spool/mail/trianas MACHTYPE=x86_64-suse-linux MINICOM=-c on OSCAR_HOME=/opt/oscar CSHEDIT=emacs LESSOPEN=lessopen.sh %s PBS_O_LOGNAME=trianas CVS_RSH=ssh USER=trianas INPUTRC=/home/trianas/.inputrc PS1=(lions_env2) \h:\w> _MODULESBEGINENV_=/home/trianas/.modulesbeginenv LANGUAGE=en_US.UTF-8 SHLVL=1 CPU=x86_64 PBS_O_PATH=/home/trianas/.local/bin/:/opt/sgi/mpt/mpt-2.12/bin:/space/hpc-apps/obs/slepc-3.8.2/bin:/space/hpc-apps/obs/petsc-3.8.3/bin:/space/hpc-apps/obs/python-2.7.10/bin:/sw/sdev/gcc/x86_64/4.9.2/bin:/sw/sdev/binutils/x86_64/2.22/bin:/opt/sgi/sbin:/opt/sgi/bin:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/bin/intel64:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/gdb/intel64:/space/hpc-apps/common/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/c3/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/space/pbspro/pbs_exec/default/bin:/space/pbspro/pbs_exec/default/sbin:. MODULESHOME=/usr/share/modules PBS_JOBCOOKIE=000000003D3025FC000000005D066474 PBS_O_HOST=hpca-login.ib0.hpca.oma.be ENV=/etc/bash.bashrc PBS_MOMPORT=15003 LS_OPTIONS=-N --color=tty -T 0 INCLUDE=/sw/sdev/binutils/x86_64/2.22/include:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl/include XNLSPATH=/usr/share/X11/nls PBS_O_MAIL=/var/mail/trianas TMPDIR=/dev/shm/pbs.3111462.hpc-pbs MODULEPATH=/space/hpc-apps/modules/obs:/space/hpc-apps/modules/common:/usr/share/modules:/usr/share/modules/modulefiles:/sw/com/modulefiles PBS_O_SHELL=/usr/bin/sh XDG_CONFIG_DIRS=/etc/xdg OMP_NUM_THREADS=4 WINDOWMANAGER=/usr/bin/gnome COLORTERM=1 _LMFILES_=/sw/com/modulefiles/intel-cc-15/15.0.3.187:/sw/com/modulefiles/intel-fc-15/15.0.3.187:/sw/com/modulefiles/intel-cmkl-15/15.0.3.187:/sw/com/modulefiles/binutils/2.22:/sw/com/modulefiles/gmp/5.0.4:/sw/com/modulefiles/mpfr/3.1.0:/sw/com/modulefiles/mpc/0.8.2:/sw/com/modulefiles/gcc/4.9.2:/space/hpc-apps/modules/obs/python-2.7.10:/usr/share/modules/modulefiles/mpt/2.12:/space/hpc-apps/modules/obs/atlas PAGER=less MODULE_VERSION=3.1.6 INTEL_LICENSE_FILE=/sw/sdev/intel/licenses/license.lic:/opt/intel/licenses QT_SYSTEM_DIR=/usr/share/desktop-data HOME=/home/trianas LD_LIBRARY_PATH=/space/hpc-apps/obs/ATLAS/lib:/opt/sgi/mpt/mpt-2.12/lib:/space/hpc-apps/obs/python-2.7.10/lib:/sw/sdev/gcc/x86_64/4.9.2/lib64:/sw/sdev/gcc/x86_64/4.9.2/lib:/sw/sdev/mpc/x86_64/0.8.2/lib:/sw/sdev/mpfr/x86_64/3.1.0/lib:/sw/sdev/gmp/x86_64/5.0.4/lib:/sw/sdev/binutils/x86_64/2.22/lib64:/sw/sdev/binutils/x86_64/2.22/lib:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl/lib/mic:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/compiler/lib/mic:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl/lib/intel64:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/compiler/lib/intel64:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/compiler/lib/mic:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/compiler/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib LANG=en_US.UTF-8 LIBRARY_PATH=/space/hpc-apps/obs/ATLAS/lib:/opt/sgi/mpt/mpt-2.12/lib:/space/hpc-apps/obs/python-2.7.10/lib:/sw/sdev/gcc/x86_64/4.9.2/lib:/sw/sdev/mpc/x86_64/0.8.2/lib:/sw/sdev/mpfr/x86_64/3.1.0/lib:/sw/sdev/gmp/x86_64/5.0.4/lib:/sw/sdev/binutils/x86_64/2.22/lib64:/sw/sdev/binutils/x86_64/2.22/lib:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl/lib/intel64:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl/lib/mic NCPUS=4 G_BROKEN_FILENAMES=1 PBS_O_WORKDIR=/home/trianas/data-b/Eramp12 _=./configure OSTYPE=linux PBS_TASKNUM=1 PBS_ACCOUNT=trianas:ROB PBS_O_SYSTEM=Linux NNTPSERVER=news XCURSOR_THEME=crystalwhite G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-15,CP1252 HOST=hpca-n00 PBS_JOBNAME=STDIN NLSPATH=/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/intel64/en_US/%N:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/compiler/lib/intel64/locale/en_US/%N:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/intel64/locale/en_US/%N FROM_HEADER= LESSCLOSE=lessclose.sh %s %s CPATH=/space/hpc-apps/obs/ATLAS/include:/opt/sgi/mpt/mpt-2.12/include:/space/hpc-apps/obs/python-2.7.10/include:/sw/sdev/gcc/x86_64/4.9.2/include:/sw/sdev/mpc/x86_64/0.8.2/include:/sw/sdev/mpfr/x86_64/3.1.0/include:/sw/sdev/gmp/x86_64/5.0.4/include:/sw/sdev/binutils/x86_64/2.22/include:/sw/sdev/intel/parallel_studio_xe_2015_update_3-pguyan/composer_xe_2015.3.187/mkl/include/intel64/lp64 C3_RSH=ssh -oConnectTimeout=10 -oForwardX11=no PBS_EXEC=/space/pbspro/pbs_exec/default MORE=-sl PBS_O_HOME=/home/trianas HOSTTYPE=x86_64 LOGNAME=trianas ATLAS=/space/hpc-apps/obs/ATLAS/lib/libsatlas.so PATH=/space/hpc-home/trianas/lions_env2/bin:/home/trianas/.local/bin/:/opt/sgi/mpt/mpt-2.12/bin:/space/hpc-apps/obs/python-2.7.10/bin:/sw/sdev/gcc/x86_64/4.9.2/bin:/sw/sdev/binutils/x86_64/2.22/bin:/opt/sgi/sbin:/opt/sgi/bin:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/bin/intel64:/sw/sdev/intel/parallel_studio_xe_2015_update_3/composer_xe_2015.3.187/debugger/gdb/intel64:/space/hpc-apps/common/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/c3/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/space/pbspro/pbs_exec/default/bin:/space/pbspro/pbs_exec/default/sbin:. TERM=xterm-256color PBS_ENVIRONMENT=PBS_INTERACTIVE MODULE_VERSION_STACK=3.1.6 INFODIR=/usr/local/info:/usr/share/info:/usr/info MPI_ROOT=/opt/sgi/mpt/mpt-2.12 PBS_JOBDIR=/home/trianas/pbs.3111462.hpc-pbs.x8z LESSKEY=/etc/lesskey.bin TZ=Etc/UTC PYTHONSTARTUP=/etc/pythonstart OLDPWD=/home/trianas LOADEDMODULES=intel-cc-15/15.0.3.187:intel-fc-15/15.0.3.187:intel-cmkl-15/15.0.3.187:binutils/2.22:gmp/5.0.4:mpfr/3.1.0:mpc/0.8.2:gcc/4.9.2:python-2.7.10:mpt/2.12:atlas PBS_O_QUEUE=entry PWD=/home/trianas/petsc-3.8.3 MPT_VERSION=2.12 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1619) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1619) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1649) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1649) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1584) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1584) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:1603) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1603) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:426) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:426) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:436) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:436) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:566) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:566) Locate a functional C compiler Executing: mpicc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Checking for program /space/hpc-home/trianas/lions_env2/bin/mpicc...not found Checking for program /home/trianas/.local/bin/mpicc...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/mpicc...found Defined make macro "CC" to "mpicc" Pushing language C All intermediate test results are stored in /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH All intermediate test results are stored in /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers Executing: mpicc -c -o /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.o -I/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: gcc: warning: /usr/lib64/libcpuset.so.1: linker input file unused because linking not done gcc: warning: /usr/lib64/libbitmask.so.1: linker input file unused because linking not done Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.o -I/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: gcc: warning: /usr/lib64/libcpuset.so.1: linker input file unused because linking not done gcc: warning: /usr/lib64/libbitmask.so.1: linker input file unused because linking not done Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: mpicc -o /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.o Executing: mpicc -c -o /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.o -I/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: gcc: warning: /usr/lib64/libcpuset.so.1: linker input file unused because linking not done gcc: warning: /usr/lib64/libbitmask.so.1: linker input file unused because linking not done Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /sw/sdev/binutils/x86_64/2.22/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: mpicc -c -o /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.o -I/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: gcc: warning: /usr/lib64/libcpuset.so.1: linker input file unused because linking not done gcc: warning: /usr/lib64/libbitmask.so.1: linker input file unused because linking not done Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.o Testing executable /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest to see if it can be run Executing: /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest Executing: /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py:599) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:599) Locate a functional C preprocessor Checking for program /space/hpc-home/trianas/lions_env2/bin/mpicc...not found Checking for program /home/trianas/.local/bin/mpicc...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/mpicc...found Defined make macro "CPP" to "mpicc -E" Pushing language C Executing: mpicc -E -I/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c stdout: # 1 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" # 1 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/confdefs.h" 1 # 2 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" 2 # 1 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conffix.h" 1 # 3 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 347 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 353 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 354 "/usr/include/sys/cdefs.h" 2 3 4 # 348 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 29 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 62 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 100 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 69 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 # 235 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 553 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)); extern int clearenv (void) __attribute__ ((__nothrow__)); # 604 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 615 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 637 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 658 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 707 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 729 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 747 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 766 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 802 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 907 "/usr/include/stdlib.h" 3 4 extern int posix_openpt (int __oflag) ; # 942 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 958 "/usr/include/stdlib.h" 3 4 # 3 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" 2 Possible ERROR while running preprocessor: stdout: # 1 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" # 1 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/confdefs.h" 1 # 2 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" 2 # 1 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conffix.h" 1 # 3 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 347 "/usr/include/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 353 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 354 "/usr/include/sys/cdefs.h" 2 3 4 # 348 "/usr/include/features.h" 2 3 4 # 371 "/usr/include/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 372 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 212 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 29 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 62 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 100 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 69 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/sysmacros.h" 1 3 4 # 30 "/usr/include/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 224 "/usr/include/sys/types.h" 2 3 4 # 235 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/space/hpc-apps/sw/sdev/gcc/x86_64/4.9.2/lib/gcc/x86_64-unknown-linux-gnu/4.9.2/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 553 "/usr/include/stdlib.h" 3 4 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)); extern int clearenv (void) __attribute__ ((__nothrow__)); # 604 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 615 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 637 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 658 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 707 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 729 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 747 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 766 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 802 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 907 "/usr/include/stdlib.h" 3 4 extern int posix_openpt (int __oflag) ; # 942 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 958 "/usr/include/stdlib.h" 3 4 # 3 "/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c" 2stderr: gcc: warning: /usr/lib64/libcpuset.so.1: linker input file unused because linking not done gcc: warning: /usr/lib64/libbitmask.so.1: linker input file unused because linking not done Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:gcc: warning: /usr/lib64/libcpuset.so.1: linker input file unused because linking not done gcc: warning: /usr/lib64/libbitmask.so.1: linker input file unused because linking not done : Preprocess stderr after filtering:gcc: warning: /usr/lib64/libcpuset.so.1: linker input file unused because linking not donegcc: warning: /usr/lib64/libbitmask.so.1: linker input file unused because linking not done: Popping language C Checking for program /space/hpc-home/trianas/lions_env2/bin/mpicc...not found Checking for program /home/trianas/.local/bin/mpicc...not found Checking for program /opt/sgi/mpt/mpt-2.12/bin/mpicc...found Defined make macro "CPP" to "mpicc --use cpp32" Pushing language C Executing: mpicc --use cpp32 -I/dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers /dev/shm/pbs.3111462.hpc-pbs/petsc-fdYfuH/config.setCompilers/conftest.c Possible ERROR while running preprocessor: exit code 256 stderr: gcc: error: cpp32: No such file or directory Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:gcc: error: cpp32: No such file or directory : Preprocess stderr after filtering:gcc: error: cpp32: No such file or directory: Popping language C ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Cannot find a C preprocessor ******************************************************************************* File "./config/configure.py", line 393, in petsc_configure framework.configure(out = sys.stdout) File "/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/framework.py", line 1097, in configure self.processChildren() File "/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/framework.py", line 1086, in processChildren self.serialEvaluation(self.childGraph) File "/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/framework.py", line 1067, in serialEvaluation child.configure() File "/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py", line 1682, in configure self.executeTest(self.checkCPreprocessor) File "/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/space/hpc-home/trianas/petsc-3.8.3/config/BuildSystem/config/setCompilers.py", line 611, in checkCPreprocessor raise RuntimeError('Cannot find a C preprocessor') ================================================================================ Finishing Configure Run at Wed Dec 20 22:25:09 2017 ================================================================================