Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Mon Nov 27 12:34:46 2017 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions COPTFLAGS="-O3 -march=native -mtune=native" CXXOPTFLAGS="-O3 -march=native -mtune=native" FOPTFLAGS="-O3 -march=native -mtune=native" --with-debugging=0 --with-x=0 --with-ssl=0 --with-shared-libraries=0 --download-metis --download-parmetis --download-fblaslapack --download-scalapack --download-openmpi --download-mumps --download-hypre --download-ptscotch Working directory: /home/lukas/gtectonTest/petsc-3.8.2 Machine platform: ('Linux', 'debian9', '4.9.0-3-amd64', '#1 SMP Debian 4.9.30-2+deb9u2 (2017-06-26)', 'x86_64', '') Python version: 2.7.13 (default, Jan 19 2017, 14:48:08) [GCC 6.3.0 20170118] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/framework.py:841) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:841) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/local/games/gdb...not found Checking for program /usr/games/gdb...not found Checking for program /home/lukas/gdb...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/local/games/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /home/lukas/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/local/games/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /home/lukas/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/local/games/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /home/lukas/dsymutil...not found Defined make macro "DSYMUTIL" to "true" ================================================================================ TEST configureGit from config.sourceControl(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.11.0 ================================================================================ TEST configureMercurial from config.sourceControl(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/local/bin/hg...not found Checking for program /usr/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/local/games/hg...not found Checking for program /usr/games/hg...not found Checking for program /home/lukas/hg...not found ================================================================================ TEST configureCLanguage from PETSc.options.languages(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 8 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Nov, 09, 2017" #define PETSC_VERSION_GIT "v3.8.2" #define PETSC_VERSION_DATE_GIT "2017-11-09 10:12:33 -0600" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/home/lukas/gtectonTest/petsc-3.8.2" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) This is a tarball installation ================================================================================ TEST configureArchitecture from PETSc.options.arch(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/arch.py:36) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:36) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""linux-gnu-x86_64"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/installDir.py:75) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:75) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/installDir.py:68) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:68) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/installDir.py:52) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:52) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/installDir.py:88) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:88) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1612) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1612) **** printenv **** MODULE_VERSION=3.2.10 BASH_FUNC_module%%=() { eval `/usr/bin/modulecmd bash $*` } SSH_CLIENT=131.211.28.70 35297 22 LOGNAME=lukas USER=lukas PATH=/usr/local/bin:/usr/bin:/bin:/usr/local/games:/usr/games HOME=/home/lukas DISPLAY=localhost:11.0 LANG=en_US.UTF-8 TERM=xterm SHELL=/bin/bash LANGUAGE=en_US:en SHLVL=2 PETSC_ARCH=linux-gnu-x86_64 PETSC_DIR=/home/lukas/gtectonTest/petsc-3.8.2 MODULESHOME=/usr/share/modules MODULE_VERSION_STACK=3.2.10 XDG_RUNTIME_DIR=/run/user/1001 XDG_SESSION_ID=4060 DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1001/bus _=./configure MODULEPATH=/etc/environment-modules/modules:/usr/share/modules/versions:/usr/Modules/$MODULE_VERSION/modulefiles:/usr/share/modules/modulefiles LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: DEAL_II_DIR=/home/lukas/deal.ii-candi SSH_TTY=/dev/pts/1 OLDPWD=/home/lukas/gtectonTest LOADEDMODULES= PWD=/home/lukas/gtectonTest/petsc-3.8.2 MAIL=/var/mail/lukas SSH_CONNECTION=131.211.28.70 35297 131.211.28.48 22 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1619) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1619) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1649) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1649) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1584) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1584) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1603) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1603) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:426) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:426) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:436) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:436) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:566) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:566) Locate a functional C compiler Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C All intermediate test results are stored in /tmp/petsc-9GuV4Y All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.setCompilers Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Testing executable /tmp/petsc-9GuV4Y/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:599) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:599) Locate a functional C preprocessor Checking for program /usr/local/bin/gcc...not found Checking for program /usr/bin/gcc...found Defined make macro "CPP" to "gcc -E" Pushing language C Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 328 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 56 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 100 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 266 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 276 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 454 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int at_quick_exit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void quick_exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 539 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 567 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 580 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 602 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 623 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 672 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 694 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 712 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 735 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 772 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 859 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 911 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 921 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 922 "/usr/include/stdlib.h" 2 3 4 # 934 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:640) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:640) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:680) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:680) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:792) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:792) Locate a functional Cxx compiler Checking for program /usr/local/bin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXX" to "g++" Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Testing executable /tmp/petsc-9GuV4Y/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:830) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:830) Locate a functional Cxx preprocessor Checking for program /usr/local/bin/g++...not found Checking for program /usr/bin/g++...found Defined make macro "CXXCPP" to "g++ -E" Pushing language Cxx Executing: g++ -E -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc" # 1 "" # 1 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 1 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-9GuV4Y/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-9GuV4Y/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/6/cstdlib" 1 3 # 39 "/usr/include/c++/6/cstdlib" 3 # 40 "/usr/include/c++/6/cstdlib" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h" 1 3 # 199 "/usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h" 3 # 199 "/usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; typedef decltype(nullptr) nullptr_t; } # 221 "/usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h" 3 namespace std { inline namespace __cxx11 __attribute__((__abi_tag__ ("cxx11"))) { } } namespace __gnu_cxx { inline namespace __cxx11 __attribute__((__abi_tag__ ("cxx11"))) { } } # 507 "/usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h" 3 # 1 "/usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h" 1 3 # 39 "/usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h" 3 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 40 "/usr/include/x86_64-linux-gnu/c++/6/bits/os_defines.h" 2 3 # 508 "/usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h" 2 3 # 1 "/usr/include/x86_64-linux-gnu/c++/6/bits/cpu_defines.h" 1 3 # 511 "/usr/include/x86_64-linux-gnu/c++/6/bits/c++config.h" 2 3 # 42 "/usr/include/c++/6/cstdlib" 2 3 # 75 "/usr/include/c++/6/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 32 "/usr/include/stdlib.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 56 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 100 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); # 196 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 197 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern unsigned long int strtoul_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern long long int strtoll_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern unsigned long long int strtoull_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern double strtod_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern float strtof_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern long double strtold_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); # 266 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 extern "C" { # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 56 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern "C" { # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 } # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 } # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 262 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 } # 276 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 454 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *secure_getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 567 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))); # 580 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 590 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 602 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 612 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 623 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 634 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 644 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 654 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 666 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (const char *__command) ; extern char *canonicalize_file_name (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 694 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (const void *, const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (const void *, const void *, void *); extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 772 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) throw (); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw (); extern int wctomb (char *__s, wchar_t __wchar) throw (); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 859 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 921 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 922 "/usr/include/stdlib.h" 2 3 4 # 934 "/usr/include/stdlib.h" 3 4 } # 76 "/usr/include/c++/6/cstdlib" 2 3 # 118 "/usr/include/c++/6/cstdlib" 3 extern "C++" { namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::at_quick_exit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::quick_exit; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } # 201 "/usr/include/c++/6/cstdlib" 3 } # 215 "/usr/include/c++/6/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 247 "/usr/include/c++/6/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } } # 3 "/tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:947) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:947) Locate a functional Fortran compiler Checking for program /usr/local/bin/gfortran...not found Checking for program /usr/bin/gfortran...found Defined make macro "FC" to "gfortran" Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Testing executable /tmp/petsc-9GuV4Y/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:968) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:968) Make sure fortran comment "!" works Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1085) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1085) ================================================================================ TEST checkArchiver from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1184) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1184) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils for Debian) 2.28 Copyright (C) 2017 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Debian) 2.28 Copyright (C) 2017 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-9GuV4Y/config.setCompilers/libconf1.a /tmp/petsc-9GuV4Y/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-9GuV4Y/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils for Debian) 2.28 Copyright (C) 2017 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils for Debian) 2.28 Copyright (C) 2017 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-9GuV4Y/config.setCompilers/libconf1.a /tmp/petsc-9GuV4Y/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-9GuV4Y/config.setCompilers/libconf1.a Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/tmp/petsc-9GuV4Y/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1298) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1298) Check that the linker can produce shared libraries Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" Trying C compiler flag Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Pushing language C Popping language C Executing: /usr/bin/ar cr /tmp/petsc-9GuV4Y/config.setCompilers/libconftest.a /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o ; /usr/bin/ranlib /tmp/petsc-9GuV4Y/config.setCompilers/libconftest.a Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/tmp/petsc-9GuV4Y/config.setCompilers -lconftest Using shared linker /usr/bin/ar with flags [] and library extension a Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1044) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1044) Determine the PIC option for each compiler Skip checking PIC options on user request ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1392) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1392) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: gcc -V Trying C linker flag -Wl,-rpath, Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wl,-rpath,/home/lukas/gtectonTest/petsc-3.8.2 /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/home/lukas/gtectonTest/petsc-3.8.2 Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: gcc -V Trying Cxx linker flag -Wl,-rpath, Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wl,-rpath,/home/lukas/gtectonTest/petsc-3.8.2 /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/home/lukas/gtectonTest/petsc-3.8.2 Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: gcc -V Trying FC linker flag -Wl,-rpath, Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wl,-rpath,/home/lukas/gtectonTest/petsc-3.8.2 /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/home/lukas/gtectonTest/petsc-3.8.2 Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1427) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1427) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1476) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1476) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.headers Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 22 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 28 "/usr/include/dlfcn.h" 2 3 4 # 52 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 82 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 188 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.libraries Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.libraries /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest /tmp/petsc-9GuV4Y/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /usr/bin/ar -o /tmp/petsc-9GuV4Y/config.setCompilers/libconftest.so /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: /usr/bin/ar: creating /tmp/petsc-9GuV4Y/config.setCompilers/libconftest.so Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c:11:3: warning: implicit declaration of function ‘printf’ [-Wimplicit-function-declaration] printf("Could not load symbol\n"); ^~~~~~ /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function ‘printf’ /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c:11:3: note: include ‘’ or provide a declaration of ‘printf’ /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function ‘printf’ printf("Invalid return from foo()\n"); ^~~~~~ /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c:15:3: note: include ‘’ or provide a declaration of ‘printf’ /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function ‘printf’ printf("Could not close library\n"); ^~~~~~ /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c:19:3: note: include ‘’ or provide a declaration of ‘printf’ Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-9GuV4Y/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/bin/ar with flags [] and library extension so ================================================================================ TEST output from config.setCompilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/setCompilers.py:1528) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1528) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with " " Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "g++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "gfortran" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/sharedLibraries.py:99) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:99) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/sharedLibraries.py:105) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:105) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined make macro "PETSC_INDEX_SIZE" to "32" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Trying C compiler flag -Wall Trying C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Trying C compiler flag -O3 -march=native -mtune=native Trying Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -O3 -march=native -mtune=native Trying FC compiler flag -Wall Trying FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Trying FC compiler flag -O3 -march=native -mtune=native Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option ‘-mfp16-format=ieee’ PETSc Error: No output file produced Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O3 -march=native -mtune=native Popping language C Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O3 -march=native -mtune=native Popping language Cxx Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wall Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Added FC compiler flag -O3 -march=native -mtune=native Popping language FC Executing: gcc --version stdout: gcc (Debian 6.3.0-18) 6.3.0 20170516 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: gcc gcc (Debian 6.3.0-18) 6.3.0 20170516 Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and multiple library search directories. -print-multi-os-directory Display the relative path to OS libraries. -print-sysroot Display the target libraries directory. -print-sysroot-headers-suffix Display the sysroot suffix used to find headers. -Wa, Pass comma-separated on to the assembler. -Wp, Pass comma-separated on to the preprocessor. -Wl, Pass comma-separated on to the linker. -Xassembler Pass on to the assembler. -Xpreprocessor Pass on to the preprocessor. -Xlinker Pass on to the linker. -save-temps Do not delete intermediate files. -save-temps= Do not delete intermediate files. -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components. -pipe Use pipes rather than intermediate files. -time Time the execution of each subprocess. -specs= Override built-in specs with the contents of . -std= Assume that the input sources are for . --sysroot= Use as the root directory for headers and libraries. -B Add to the compiler's search paths. -v Display the programs invoked by the compiler. -### Like -v but options quoted and commands not executed. -E Preprocess only; do not compile, assemble or link. -S Compile only; do not assemble or link. -c Compile and assemble, but do not link. -o Place the output into . -pie Create a position independent executable. -shared Create a shared library. -x Specify the language of the following input files. Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension. Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and multiple library search directories. -print-multi-os-directory Display the relative path to OS libraries. -print-sysroot Display the target libraries directory. -print-sysroot-headers-suffix Display the sysroot suffix used to find headers. -Wa, Pass comma-separated on to the assembler. -Wp, Pass comma-separated on to the preprocessor. -Wl, Pass comma-separated on to the linker. -Xassembler Pass on to the assembler. -Xpreprocessor Pass on to the preprocessor. -Xlinker Pass on to the linker. -save-temps Do not delete intermediate files. -save-temps= Do not delete intermediate files. -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components. -pipe Use pipes rather than intermediate files. -time Time the execution of each subprocess. -specs= Override built-in specs with the contents of . -std= Assume that the input sources are for . --sysroot= Use as the root directory for headers and libraries. -B Add to the compiler's search paths. -v Display the programs invoked by the compiler. -### Like -v but options quoted and commands not executed. -E Preprocess only; do not compile, assemble or link. -S Compile only; do not assemble or link. -c Compile and assemble, but do not link. -o Place the output into . -pie Create a position independent executable. -shared Create a shared library. -x Specify the language of the following input files. Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension. Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: g++ --version stdout: g++ (Debian 6.3.0-18) 6.3.0 20170516 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: g++ g++ (Debian 6.3.0-18) 6.3.0 20170516 Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and multiple library search directories. -print-multi-os-directory Display the relative path to OS libraries. -print-sysroot Display the target libraries directory. -print-sysroot-headers-suffix Display the sysroot suffix used to find headers. -Wa, Pass comma-separated on to the assembler. -Wp, Pass comma-separated on to the preprocessor. -Wl, Pass comma-separated on to the linker. -Xassembler Pass on to the assembler. -Xpreprocessor Pass on to the preprocessor. -Xlinker Pass on to the linker. -save-temps Do not delete intermediate files. -save-temps= Do not delete intermediate files. -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components. -pipe Use pipes rather than intermediate files. -time Time the execution of each subprocess. -specs= Override built-in specs with the contents of . -std= Assume that the input sources are for . --sysroot= Use as the root directory for headers and libraries. -B Add to the compiler's search paths. -v Display the programs invoked by the compiler. -### Like -v but options quoted and commands not executed. -E Preprocess only; do not compile, assemble or link. -S Compile only; do not assemble or link. -c Compile and assemble, but do not link. -o Place the output into . -pie Create a position independent executable. -shared Create a shared library. -x Specify the language of the following input files. Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension. Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gfortran --version stdout: GNU Fortran (Debian 6.3.0-18) 6.3.0 20170516 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: gfortran GNU Fortran (Debian 6.3.0-18) 6.3.0 20170516 Executing: gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and multiple library search directories. -print-multi-os-directory Display the relative path to OS libraries. -print-sysroot Display the target libraries directory. -print-sysroot-headers-suffix Display the sysroot suffix used to find headers. -Wa, Pass comma-separated on to the assembler. -Wp, Pass comma-separated on to the preprocessor. -Wl, Pass comma-separated on to the linker. -Xassembler Pass on to the assembler. -Xpreprocessor Pass on to the preprocessor. -Xlinker Pass on to the linker. -save-temps Do not delete intermediate files. -save-temps= Do not delete intermediate files. -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components. -pipe Use pipes rather than intermediate files. -time Time the execution of each subprocess. -specs= Override built-in specs with the contents of . -std= Assume that the input sources are for . --sysroot= Use as the root directory for headers and libraries. -B Add to the compiler's search paths. -v Display the programs invoked by the compiler. -### Like -v but options quoted and commands not executed. -E Preprocess only; do not compile, assemble or link. -S Compile only; do not assemble or link. -c Compile and assemble, but do not link. -o Place the output into . -pie Create a position independent executable. -shared Create a shared library. -x Specify the language of the following input files. Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension. Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gfortran --version stdout: GNU Fortran (Debian 6.3.0-18) 6.3.0 20170516 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: gfortran --version stdout: GNU Fortran (Debian 6.3.0-18) 6.3.0 20170516 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. Executing: gfortran --version stdout: GNU Fortran (Debian 6.3.0-18) 6.3.0 20170516 Copyright (C) 2016 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ================================================================================ TEST configureDebugging from PETSc.options.debugging(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and multiple library search directories. -print-multi-os-directory Display the relative path to OS libraries. -print-sysroot Display the target libraries directory. -print-sysroot-headers-suffix Display the sysroot suffix used to find headers. -Wa, Pass comma-separated on to the assembler. -Wp, Pass comma-separated on to the preprocessor. -Wl, Pass comma-separated on to the linker. -Xassembler Pass on to the assembler. -Xpreprocessor Pass on to the preprocessor. -Xlinker Pass on to the linker. -save-temps Do not delete intermediate files. -save-temps= Do not delete intermediate files. -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components. -pipe Use pipes rather than intermediate files. -time Time the execution of each subprocess. -specs= Override built-in specs with the contents of . -std= Assume that the input sources are for . --sysroot= Use as the root directory for headers and libraries. -B Add to the compiler's search paths. -v Display the programs invoked by the compiler. -### Like -v but options quoted and commands not executed. -E Preprocess only; do not compile, assemble or link. -S Compile only; do not assemble or link. -c Compile and assemble, but do not link. -o Place the output into . -pie Create a position independent executable. -shared Create a shared library. -x Specify the language of the following input files. Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension. Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: gcc -V Pushing language C All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.compilers Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.compilers/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.compilers/conftest.c:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:326) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:326) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:337) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:337) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:171) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:171) Determines the libraries needed to link with C Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 6.3.0-18' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 6.3.0 20170516 (Debian 6.3.0-18) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-9GuV4Y/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fstack-protector' '-fvisibility=hidden' '-O3' '-march=native' '-mtune=native' /usr/lib/gcc/x86_64-linux-gnu/6/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper -plugin-opt=-fresolution=/tmp/ccZFq87Z.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o /tmp/petsc-9GuV4Y/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. /tmp/petsc-9GuV4Y/config.compilers/conftest.o -ldl -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-9GuV4Y/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fstack-protector' '-fvisibility=hidden' '-O3' '-march=native' '-mtune=native' Popping language C compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gcc compilers: Unknown arg COLLECT_GCC=gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs compilers: Checking arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-6 compilers: Unknown arg --program-suffix=-6 compilers: Checking arg --program-prefix=x86_64-linux-gnu- compilers: Unknown arg --program-prefix=x86_64-linux-gnu- compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --with-default-libstdcxx-abi=new compilers: Unknown arg --with-default-libstdcxx-abi=new compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-vtable-verify compilers: Unknown arg --disable-vtable-verify compilers: Checking arg --enable-libmpx compilers: Unknown arg --enable-libmpx compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-default-pie compilers: Unknown arg --enable-default-pie compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --with-target-system-zlib compilers: Unknown arg --with-target-system-zlib compilers: Checking arg --enable-objc-gc=auto compilers: Unknown arg --enable-objc-gc=auto compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 6.3.0 compilers: Unknown arg 6.3.0 compilers: Checking arg 20170516 compilers: Unknown arg 20170516 compilers: Checking arg (Debian compilers: Unknown arg (Debian compilers: Checking arg 6.3.0-18) compilers: Unknown arg 6.3.0-18) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/ccZFq87Z.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/ccZFq87Z.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -pie compilers: Unknown arg -pie compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-9GuV4Y/config.compilers/conftest compilers: Unknown arg /tmp/petsc-9GuV4Y/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. compilers: Checking arg /tmp/petsc-9GuV4Y/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-9GuV4Y/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Libraries needed to link C code with another linker: ['-L/usr/lib/gcc/x86_64-linux-gnu/6', '-L/usr/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-L/usr/lib/x86_64-linux-gnu', '-ldl', '-lgcc_s'] compilers: Check that C libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1401) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1401) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native -MMD -MP /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native -MMD -MP /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native -MMD -MP /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Popping language FC ================================================================================ TEST checkC99Flag from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1447) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1447) Check for -std=c99 or equivalent flag Accepted C99 compile flag: Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c:7:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Popping language C Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase. --help Display this information. --target-help Display target specific command line options. --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...]. Display specific types of command line options. (Use '-v --help' to display command line options of sub-processes). --version Display compiler version information. -dumpspecs Display all of the built in spec strings. -dumpversion Display the version of the compiler. -dumpmachine Display the compiler's target processor. -print-search-dirs Display the directories in the compiler's search path. -print-libgcc-file-name Display the name of the compiler's companion library. -print-file-name= Display the full path to library . -print-prog-name= Display the full path to compiler component . -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path. -print-multi-directory Display the root directory for versions of libgcc. -print-multi-lib Display the mapping between command line options and multiple library search directories. -print-multi-os-directory Display the relative path to OS libraries. -print-sysroot Display the target libraries directory. -print-sysroot-headers-suffix Display the sysroot suffix used to find headers. -Wa, Pass comma-separated on to the assembler. -Wp, Pass comma-separated on to the preprocessor. -Wl, Pass comma-separated on to the linker. -Xassembler Pass on to the assembler. -Xpreprocessor Pass on to the preprocessor. -Xlinker Pass on to the linker. -save-temps Do not delete intermediate files. -save-temps= Do not delete intermediate files. -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components. -pipe Use pipes rather than intermediate files. -time Time the execution of each subprocess. -specs= Override built-in specs with the contents of . -std= Assume that the input sources are for . --sysroot= Use as the root directory for headers and libraries. -B Add to the compiler's search paths. -v Display the programs invoked by the compiler. -### Like -v but options quoted and commands not executed. -E Preprocess only; do not compile, assemble or link. -S Compile only; do not assemble or link. -c Compile and assemble, but do not link. -o Place the output into . -pie Create a position independent executable. -shared Create a shared library. -x Specify the language of the following input files. Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension. Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST checkRestrict from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: gcc -V Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.compilers/conftest.cc: In function ‘int main()’: /tmp/petsc-9GuV4Y/config.compilers/conftest.cc:5:20: warning: unused variable ‘x’ [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:377) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:377) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:350) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:350) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:435) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:435) Determines the libraries needed to link with C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 6.3.0-18' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 6.3.0 20170516 (Debian 6.3.0-18) COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-9GuV4Y/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fstack-protector' '-fvisibility=hidden' '-O3' '-march=native' '-mtune=native' '-L/usr/lib/gcc/x86_64-linux-gnu/6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' /usr/lib/gcc/x86_64-linux-gnu/6/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper -plugin-opt=-fresolution=/tmp/cc2Ke5jK.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o /tmp/petsc-9GuV4Y/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. /tmp/petsc-9GuV4Y/config.compilers/conftest.o -ldl -lgcc_s -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-9GuV4Y/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fstack-protector' '-fvisibility=hidden' '-O3' '-march=native' '-mtune=native' '-L/usr/lib/gcc/x86_64-linux-gnu/6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' Popping language Cxx compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=g++ compilers: Unknown arg COLLECT_GCC=g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs compilers: Checking arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-6 compilers: Unknown arg --program-suffix=-6 compilers: Checking arg --program-prefix=x86_64-linux-gnu- compilers: Unknown arg --program-prefix=x86_64-linux-gnu- compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --with-default-libstdcxx-abi=new compilers: Unknown arg --with-default-libstdcxx-abi=new compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-vtable-verify compilers: Unknown arg --disable-vtable-verify compilers: Checking arg --enable-libmpx compilers: Unknown arg --enable-libmpx compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-default-pie compilers: Unknown arg --enable-default-pie compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --with-target-system-zlib compilers: Unknown arg --with-target-system-zlib compilers: Checking arg --enable-objc-gc=auto compilers: Unknown arg --enable-objc-gc=auto compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 6.3.0 compilers: Unknown arg 6.3.0 compilers: Checking arg 20170516 compilers: Unknown arg 20170516 compilers: Checking arg (Debian compilers: Unknown arg (Debian compilers: Checking arg 6.3.0-18) compilers: Unknown arg 6.3.0-18) compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/cc2Ke5jK.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/cc2Ke5jK.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -pie compilers: Unknown arg -pie compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-9GuV4Y/config.compilers/conftest compilers: Unknown arg /tmp/petsc-9GuV4Y/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. compilers: Checking arg /tmp/petsc-9GuV4Y/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-9GuV4Y/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Libraries needed to link Cxx code with another linker: ['-L/usr/lib/gcc/x86_64-linux-gnu/6', '-L/usr/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lstdc++', '-lm'] compilers: Check that Cxx libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main end Executing: gfortran -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lstdc++ -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:392) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:392) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc: In function ‘int main()’: /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc:13:24: warning: unused variable ‘x’ [-Wunused-variable] const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:602) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:602) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.compilers/conftest.F90:2:21: real*8 variable 1 Warning: Unused variable ‘variable’ declared at (1) [-Wunused-variable] Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:661) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:661) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o /tmp/petsc-9GuV4Y/config.compilers/confc.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:698) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:698) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o /tmp/petsc-9GuV4Y/config.compilers/confc.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.compilers/conftest.o: In function `main': conftest.F90:(.text.startup+0x1d): undefined reference to `d1_chk_' collect2: error: ld returned 1 exit status Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:708) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:708) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:732) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:732) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native -DTesting /tmp/petsc-9GuV4Y/config.setCompilers/conftest.F90 Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC ================================================================================ TEST checkFortranLibraries from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:752) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:752) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: gfortran -V Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: program main end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: Driving: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -v -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -l gfortran -l m -shared-libgcc Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 6.3.0-18' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 6.3.0 20170516 (Debian 6.3.0-18) Reading specs from /usr/lib/gcc/x86_64-linux-gnu/6/libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-9GuV4Y/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-march=native' '-mtune=native' '-L/usr/lib/gcc/x86_64-linux-gnu/6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-9GuV4Y/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-march=native' '-mtune=native' '-L/usr/lib/gcc/x86_64-linux-gnu/6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' /usr/lib/gcc/x86_64-linux-gnu/6/collect2 -plugin /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper -plugin-opt=-fresolution=/tmp/ccFD6Zki.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lquadmath -plugin-opt=-pass-through=-lm -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --sysroot=/ --build-id --eh-frame-hdr -m elf_x86_64 --hash-style=gnu -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o /tmp/petsc-9GuV4Y/config.compilers/conftest /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. /tmp/petsc-9GuV4Y/config.compilers/conftest.o -ldl -lgcc_s -ldl -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-9GuV4Y/config.compilers/conftest' '-v' '-Wall' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O3' '-march=native' '-mtune=native' '-L/usr/lib/gcc/x86_64-linux-gnu/6' '-L/usr/lib/x86_64-linux-gnu' '-L/lib/x86_64-linux-gnu' '-L/usr/lib/x86_64-linux-gnu' '-shared-libgcc' Popping language FC compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg gfortran compilers: Unknown arg gfortran compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-9GuV4Y/config.compilers/conftest compilers: Unknown arg /tmp/petsc-9GuV4Y/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -O3 compilers: Unknown arg -O3 compilers: Checking arg -march=native compilers: Unknown arg -march=native compilers: Checking arg -mtune=native compilers: Unknown arg -mtune=native compilers: Checking arg /tmp/petsc-9GuV4Y/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-9GuV4Y/config.compilers/conftest.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Found library directory: -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Found library directory: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Found library directory: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -l compilers: Found canonical library: -lm compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gfortran compilers: Unknown arg COLLECT_GCC=gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-linux-gnu compilers: Unknown arg x86_64-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../src/configure compilers: Unknown arg ../src/configure compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs compilers: Unknown arg --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs compilers: Checking arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Unknown arg --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ compilers: Checking arg --prefix=/usr compilers: Unknown arg --prefix=/usr compilers: Checking arg --program-suffix=-6 compilers: Unknown arg --program-suffix=-6 compilers: Checking arg --program-prefix=x86_64-linux-gnu- compilers: Unknown arg --program-prefix=x86_64-linux-gnu- compilers: Checking arg --enable-shared compilers: Unknown arg --enable-shared compilers: Checking arg --enable-linker-build-id compilers: Unknown arg --enable-linker-build-id compilers: Checking arg --libexecdir=/usr/lib compilers: Unknown arg --libexecdir=/usr/lib compilers: Checking arg --without-included-gettext compilers: Unknown arg --without-included-gettext compilers: Checking arg --enable-threads=posix compilers: Unknown arg --enable-threads=posix compilers: Checking arg --libdir=/usr/lib compilers: Unknown arg --libdir=/usr/lib compilers: Checking arg --enable-nls compilers: Unknown arg --enable-nls compilers: Checking arg --with-sysroot=/ compilers: Unknown arg --with-sysroot=/ compilers: Checking arg --enable-clocale=gnu compilers: Unknown arg --enable-clocale=gnu compilers: Checking arg --enable-libstdcxx-debug compilers: Unknown arg --enable-libstdcxx-debug compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --with-default-libstdcxx-abi=new compilers: Unknown arg --with-default-libstdcxx-abi=new compilers: Checking arg --enable-gnu-unique-object compilers: Unknown arg --enable-gnu-unique-object compilers: Checking arg --disable-vtable-verify compilers: Unknown arg --disable-vtable-verify compilers: Checking arg --enable-libmpx compilers: Unknown arg --enable-libmpx compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --enable-default-pie compilers: Unknown arg --enable-default-pie compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --disable-browser-plugin compilers: Unknown arg --disable-browser-plugin compilers: Checking arg --enable-java-awt=gtk compilers: Unknown arg --enable-java-awt=gtk compilers: Checking arg --enable-gtk-cairo compilers: Unknown arg --enable-gtk-cairo compilers: Checking arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre compilers: Unknown arg --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre compilers: Checking arg --enable-java-home compilers: Unknown arg --enable-java-home compilers: Checking arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 compilers: Unknown arg --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 compilers: Checking arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 compilers: Unknown arg --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 compilers: Checking arg --with-arch-directory=amd64 compilers: Unknown arg --with-arch-directory=amd64 compilers: Checking arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Unknown arg --with-ecj-jar=/usr/share/java/eclipse-ecj.jar compilers: Checking arg --with-target-system-zlib compilers: Unknown arg --with-target-system-zlib compilers: Checking arg --enable-objc-gc=auto compilers: Unknown arg --enable-objc-gc=auto compilers: Checking arg --enable-multiarch compilers: Unknown arg --enable-multiarch compilers: Checking arg --with-arch-32=i686 compilers: Unknown arg --with-arch-32=i686 compilers: Checking arg --with-abi=m64 compilers: Unknown arg --with-abi=m64 compilers: Checking arg --with-multilib-list=m32,m64,mx32 compilers: Unknown arg --with-multilib-list=m32,m64,mx32 compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg --with-tune=generic compilers: Unknown arg --with-tune=generic compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --build=x86_64-linux-gnu compilers: Unknown arg --build=x86_64-linux-gnu compilers: Checking arg --host=x86_64-linux-gnu compilers: Unknown arg --host=x86_64-linux-gnu compilers: Checking arg --target=x86_64-linux-gnu compilers: Unknown arg --target=x86_64-linux-gnu compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 6.3.0 compilers: Unknown arg 6.3.0 compilers: Checking arg 20170516 compilers: Unknown arg 20170516 compilers: Checking arg (Debian compilers: Unknown arg (Debian compilers: Checking arg 6.3.0-18) compilers: Unknown arg 6.3.0-18) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/libgfortran.spec compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Skipping arg COMPILER_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/lib/gcc/x86_64-linux-gnu/6/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib/:/lib/x86_64-linux-gnu/:/lib/../lib/:/usr/lib/x86_64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/x86_64-linux-gnu/6/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/collect2 compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/collect2 compilers: Checking arg -plugin compilers: Unknown arg -plugin compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/liblto_plugin.so compilers: Checking arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Unknown arg -plugin-opt=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper compilers: Checking arg -plugin-opt=-fresolution=/tmp/ccFD6Zki.res compilers: Unknown arg -plugin-opt=-fresolution=/tmp/ccFD6Zki.res compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lquadmath compilers: Unknown arg -plugin-opt=-pass-through=-lquadmath compilers: Checking arg -plugin-opt=-pass-through=-lm compilers: Unknown arg -plugin-opt=-pass-through=-lm compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg -plugin-opt=-pass-through=-lc compilers: Unknown arg -plugin-opt=-pass-through=-lc compilers: Checking arg -plugin-opt=-pass-through=-lgcc_s compilers: Unknown arg -plugin-opt=-pass-through=-lgcc_s compilers: Checking arg -plugin-opt=-pass-through=-lgcc compilers: Unknown arg -plugin-opt=-pass-through=-lgcc compilers: Checking arg --sysroot=/ compilers: Unknown arg --sysroot=/ compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg --hash-style=gnu compilers: Unknown arg --hash-style=gnu compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -pie compilers: Unknown arg -pie compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-9GuV4Y/config.compilers/conftest compilers: Unknown arg /tmp/petsc-9GuV4Y/config.compilers/conftest compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/Scrt1.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/crtbeginS.o compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-linux-gnu/6 compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../../../lib compilers: Checking arg -L/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/lib/x86_64-linux-gnu compilers: Checking arg -L/lib/../lib compilers: Checking arg -L/usr/lib/x86_64-linux-gnu compilers: Already in lflags so skipping: -L/usr/lib/x86_64-linux-gnu compilers: Checking arg -L/usr/lib/../lib compilers: Checking arg -L/usr/lib/gcc/x86_64-linux-gnu/6/../../.. compilers: Checking arg /tmp/petsc-9GuV4Y/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-9GuV4Y/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Already in lflags: -lm compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/crtendS.o compilers: Checking arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-linux-gnu/6/../../../x86_64-linux-gnu/crtn.o compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Libraries needed to link Fortran code with the C linker: ['-L/usr/lib/gcc/x86_64-linux-gnu/6', '-L/usr/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lgfortran', '-lm', '-lquadmath'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX compilers: Fortran libraries can be used from C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -o /tmp/petsc-9GuV4Y/config.setCompilers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.setCompilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Executing: /tmp/petsc-9GuV4Y/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1107) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1107) Check that Fortran can be linked against C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o /tmp/petsc-9GuV4Y/config.compilers/cxxobj.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s /tmp/petsc-9GuV4Y/config.compilers/confc.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1142) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1142) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran90FreeForm from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1155) TESTING: checkFortran90FreeForm from config.compilers(config/BuildSystem/config/compilers.py:1155) Determine whether the Fortran compiler handles F90FreeForm We also require that the compiler handles lines longer than 132 characters Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8); INTEGER (KIND=int) :: ierr; ierr = 1 end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "USING_F90FREEFORM" to "1" Fortran compiler supports F90FreeForm Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1169) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1169) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: module Base_module type, public :: base_type integer :: A contains procedure, public :: Print => BasePrint end type base_type contains subroutine BasePrint(this) class(base_type) :: this end subroutine BasePrint end module Base_module program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1203) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1203) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o /tmp/petsc-9GuV4Y/config.compilers/fooobj.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.compilers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.compilers/conftest Executing: /tmp/petsc-9GuV4Y/config.compilers/conftest stdout: arrays [0x7fff28c08e80 0x7fff28c08e80 0x7fff28c08e80] arrays [0x7fff28c08dc0 0x7fff28c08e20 0x7fff28c08dc0] pointers do not match! [0x7f554b30e760 0x7f554af7dca8] [0x7f554c180700] ERROR while running executable: Could not execute "/tmp/petsc-9GuV4Y/config.compilers/conftest": arrays [0x7fff28c08e80 0x7fff28c08e80 0x7fff28c08e80] arrays [0x7fff28c08dc0 0x7fff28c08e20 0x7fff28c08dc0] pointers do not match! [0x7f554b30e760 0x7f554af7dca8] [0x7f554c180700] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1290) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1290) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.compilers/conftest -I/tmp/petsc-9GuV4Y/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.o /tmp/petsc-9GuV4Y/config.compilers/configtest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1356) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1356) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -module /tmp/petsc-9GuV4Y/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-module’; did you mean ‘-mhle’? Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -module:/tmp/petsc-9GuV4Y/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-module:/tmp/petsc-9GuV4Y/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -fmod=/tmp/petsc-9GuV4Y/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option ‘-fmod=/tmp/petsc-9GuV4Y/config.compilers/confdir’ Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.compilers/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -J/tmp/petsc-9GuV4Y/config.compilers/confdir -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.compilers/conftest.F90 Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/compilers.py:1515) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1515) ================================================================================ TEST configureClosure from config.utilities.closure(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.utilities.closure Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.closure/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.utilities.closure -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.utilities.closure/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.utilities.closure/conftest.c:6:6: error: expected identifier or ‘(’ before ‘^’ token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/fortranCPP.py:21) TESTING: configureFortranCPP from PETSc.options.fortranCPP(config/PETSc/options/fortranCPP.py:21) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.headers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 92 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 123 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 160 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 206 "/usr/include/string.h" 3 4 # 231 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 258 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 277 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 310 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 337 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 392 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 422 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 440 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 484 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 512 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 529 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 552 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 656 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 328 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 56 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 100 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 266 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 276 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 454 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int at_quick_exit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void quick_exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 539 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 567 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 580 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 602 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 623 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 672 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 694 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 712 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 735 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 772 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 859 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 911 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 921 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 922 "/usr/include/stdlib.h" 2 3 4 # 934 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.headers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.headers/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.headers/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.headers/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.headers/conftest Executing: /tmp/petsc-9GuV4Y/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 5 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/stat.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 37 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 102 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 __syscall_slong_t __glibc_reserved[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 105 "/usr/include/x86_64-linux-gnu/sys/stat.h" 2 3 4 # 208 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int stat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 237 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int fstatat (int __fd, const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 262 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int lstat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 283 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int chmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int fchmodat (int __fd, const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__ , __leaf__)); # 320 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int mkdir (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mknod (const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, const char *__path, const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, const struct timespec __times[2]) __attribute__ ((__nothrow__ , __leaf__)); # 398 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))); # 441 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 extern int __xmknod (int __ver, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 5))); # 533 "/usr/include/x86_64-linux-gnu/sys/stat.h" 3 4 # 6 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.headers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timespec_get (struct timespec *__ts, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 430 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 26 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 28 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 55 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 71 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.headers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 26 "/usr/include/math.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/math-vector.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/math-vector.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/libm-simd-decl-stubs.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/math-vector.h" 2 3 4 # 32 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_val.h" 1 3 4 # 36 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_valf.h" 1 3 4 # 38 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/huge_vall.h" 1 3 4 # 39 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/inf.h" 1 3 4 # 42 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/nan.h" 1 3 4 # 45 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/mathdef.h" 3 4 typedef float float_t; typedef double double_t; # 49 "/usr/include/math.h" 2 3 4 # 83 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 305 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); # 390 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern double scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); # 84 "/usr/include/math.h" 2 3 4 # 104 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 305 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); # 390 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); # 105 "/usr/include/math.h" 2 3 4 # 151 "/usr/include/math.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 1 3 4 # 52 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); # 86 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 126 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 305 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); # 390 "/usr/include/x86_64-linux-gnu/bits/mathcalls.h" 3 4 extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); # 152 "/usr/include/math.h" 2 3 4 # 168 "/usr/include/math.h" 3 4 extern int signgam; # 209 "/usr/include/math.h" 3 4 enum { FP_NAN = 0, FP_INFINITE = 1, FP_ZERO = 2, FP_SUBNORMAL = 3, FP_NORMAL = 4 }; # 347 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 372 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 534 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATH_H" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.headers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 38 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 167 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 168 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 183 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char __ss_padding[(128 - (sizeof (unsigned short int)) - sizeof (unsigned long int))]; unsigned long int __ss_align; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_BATCH = 0x40000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 295 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 322 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 368 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 369 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 402 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 22 "/usr/include/malloc.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 149 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 149 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 328 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef int wchar_t; # 426 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef struct { long long __max_align_ll __attribute__((__aligned__(__alignof__(long long)))); long double __max_align_ld __attribute__((__aligned__(__alignof__(long double)))); } max_align_t; # 24 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 29 "/usr/include/stdio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 34 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 36 "/usr/include/stdio.h" 2 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 74 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 31 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/include/wchar.h" 1 3 4 # 82 "/usr/include/wchar.h" 3 4 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 32 "/usr/include/libio.h" 2 3 4 # 49 "/usr/include/libio.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdarg.h" 1 3 4 # 40 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 50 "/usr/include/libio.h" 2 3 4 # 144 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 173 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 241 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 289 "/usr/include/libio.h" 3 4 __off64_t _offset; void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 333 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 385 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 429 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 459 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 75 "/usr/include/stdio.h" 2 3 4 typedef __gnuc_va_list va_list; # 90 "/usr/include/stdio.h" 3 4 typedef __off_t off_t; # 104 "/usr/include/stdio.h" 3 4 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 166 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdio_lim.h" 1 3 4 # 167 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (const char *__filename) __attribute__ ((__nothrow__ , __leaf__)); extern int rename (const char *__old, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern int renameat (int __oldfd, const char *__old, int __newfd, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern FILE *tmpfile (void) ; # 211 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; # 229 "/usr/include/stdio.h" 3 4 extern char *tempnam (const char *__dir, const char *__pfx) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 254 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 268 "/usr/include/stdio.h" 3 4 extern FILE *fopen (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; # 297 "/usr/include/stdio.h" 3 4 # 308 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; # 321 "/usr/include/stdio.h" 3 4 extern FILE *fmemopen (void *__s, size_t __len, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int fprintf (FILE *__restrict __stream, const char *__restrict __format, ...); extern int printf (const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 414 "/usr/include/stdio.h" 3 4 extern int vdprintf (int __fd, const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) ; extern int scanf (const char *__restrict __format, ...) ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__ , __leaf__)); # 445 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__ , __leaf__)) ; # 465 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 496 "/usr/include/stdio.h" 3 4 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 524 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 552 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 563 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 596 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; # 642 "/usr/include/stdio.h" 3 4 # 667 "/usr/include/stdio.h" 3 4 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (const char *__restrict __s, FILE *__restrict __stream); extern int puts (const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 739 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 775 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 794 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, const fpos_t *__pos); # 817 "/usr/include/stdio.h" 3 4 # 826 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void perror (const char *__s); # 1 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern const char *const sys_errlist[]; # 856 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; # 874 "/usr/include/stdio.h" 3 4 extern FILE *popen (const char *__command, const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 914 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); # 944 "/usr/include/stdio.h" 3 4 # 25 "/usr/include/malloc.h" 2 3 4 # 35 "/usr/include/malloc.h" 3 4 extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *pvalloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__ , __leaf__)); # 121 "/usr/include/malloc.h" 3 4 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__ , __leaf__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void malloc_stats (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_info (int __options, FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern void *malloc_get_state (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void (*volatile __free_hook) (void *__ptr, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __malloc_hook)(size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __realloc_hook)(void *__ptr, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __memalign_hook)(size_t __alignment, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void (*volatile __after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 27 "/usr/include/time.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 28 "/usr/include/time.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timespec_get (struct timespec *__ts, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 430 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 21 "/usr/include/endian.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/endian.h" 2 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 26 "/usr/include/strings.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 27 "/usr/include/strings.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/strings.h" 2 3 4 extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); # 72 "/usr/include/strings.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 100 "/usr/include/strings.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((const)); extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 124 "/usr/include/strings.h" 2 3 4 extern int strcasecmp_l (const char *__s1, const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (const char *__s1, const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/inttypes.h" 1 3 4 # 25 "/usr/include/inttypes.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/inttypes.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 2 3 4 # 28 "/usr/include/inttypes.h" 2 3 4 typedef int __gwchar_t; # 266 "/usr/include/inttypes.h" 3 4 typedef struct { long int quot; long int rem; } imaxdiv_t; # 290 "/usr/include/inttypes.h" 3 4 extern intmax_t imaxabs (intmax_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern intmax_t strtoimax (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)); extern uintmax_t strtoumax (const char *__restrict __nptr, char ** __restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)); extern intmax_t wcstoimax (const __gwchar_t *__restrict __nptr, __gwchar_t **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)); extern uintmax_t wcstoumax (const __gwchar_t *__restrict __nptr, __gwchar_t ** __restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)); # 432 "/usr/include/inttypes.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 22 "/usr/include/sched.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sched.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 73 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 96 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 119 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 202 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 # 19 "/usr/include/asm-generic/int-ll64.h" 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 7 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/wait.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 30 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 102 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 33 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/signum.h" 1 3 4 # 58 "/usr/include/signal.h" 2 3 4 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 76 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 58 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; short int si_addr_lsb; struct { void *_lower; void *_upper; } si_addr_bnd; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 160 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR, BUS_MCEERR_AR, BUS_MCEERR_AO }; # 264 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 316 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef union pthread_attr_t pthread_attr_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 100 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 4 # 127 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); # 187 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 207 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 243 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 244 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 301 "/usr/include/signal.h" 3 4 extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; # 1 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 121 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 307 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 317 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 49 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 324 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 92 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 327 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 361 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 362 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 363 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 36 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 63 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t wait (int *__stat_loc); # 86 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); typedef __id_t id_t; # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 # 97 "/usr/include/x86_64-linux-gnu/sys/wait.h" 2 3 4 # 109 "/usr/include/x86_64-linux-gnu/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (int *__stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, int *__stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 24 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 25 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 328 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef int wchar_t; # 33 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 1 3 4 # 50 "/usr/include/x86_64-linux-gnu/bits/waitflags.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 42 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/waitstatus.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 56 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 100 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 266 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 276 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 4 # 24 "/usr/include/alloca.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 25 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 454 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int at_quick_exit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void quick_exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 539 "/usr/include/stdlib.h" 3 4 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); # 567 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 580 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 602 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 623 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 672 "/usr/include/stdlib.h" 3 4 extern int system (const char *__command) ; # 694 "/usr/include/stdlib.h" 3 4 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 712 "/usr/include/stdlib.h" 3 4 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 735 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; # 772 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 859 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 911 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 921 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stdlib-float.h" 1 3 4 # 922 "/usr/include/stdlib.h" 2 3 4 # 934 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 21 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 23 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 28 "/usr/include/sched.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 29 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/x86_64-linux-gnu/bits/sched.h" 1 3 4 # 73 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; # 96 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 struct __sched_param { int __sched_priority; }; # 119 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 202 "/usr/include/x86_64-linux-gnu/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 126 "/usr/include/sched.h" 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 29 "/usr/include/time.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 38 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 42 "/usr/include/time.h" 2 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 186 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 221 "/usr/include/time.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 4 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); # 236 "/usr/include/time.h" 3 4 extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); # 319 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 334 "/usr/include/time.h" 3 4 extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timespec_get (struct timespec *__ts, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 430 "/usr/include/time.h" 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 28 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 114 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 155 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 190 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 228 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 271 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 429 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 494 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 506 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 540 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 680 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 692 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 733 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 806 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 888 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 1000 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1044 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1111 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1145 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); # 1159 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 25 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/bits/setjmp.h" 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 31 "/usr/include/setjmp.h" 2 3 4 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; # 102 "/usr/include/setjmp.h" 3 4 extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 112 "/usr/include/setjmp.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/utsname.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 2 3 4 # 48 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 # 48 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 81 "/usr/include/x86_64-linux-gnu/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 25 "/usr/include/limits.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/limits.h" 2 3 4 # 143 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 38 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 161 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 144 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 148 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 2 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 25 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 1 3 4 # 35 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 61 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 1 3 4 # 363 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 3 4 # 437 "/usr/include/x86_64-linux-gnu/bits/fcntl-linux.h" 3 4 # 61 "/usr/include/x86_64-linux-gnu/bits/fcntl.h" 2 3 4 # 36 "/usr/include/fcntl.h" 2 3 4 # 50 "/usr/include/fcntl.h" 3 4 typedef __mode_t mode_t; typedef __off_t off_t; # 69 "/usr/include/fcntl.h" 3 4 typedef __pid_t pid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 77 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/stat.h" 1 3 4 # 46 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 __syscall_slong_t __glibc_reserved[3]; # 115 "/usr/include/x86_64-linux-gnu/bits/stat.h" 3 4 }; # 80 "/usr/include/fcntl.h" 2 3 4 # 148 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 158 "/usr/include/fcntl.h" 3 4 extern int open (const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 182 "/usr/include/fcntl.h" 3 4 extern int openat (int __fd, const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 204 "/usr/include/fcntl.h" 3 4 extern int creat (const char *__file, mode_t __mode) __attribute__ ((__nonnull__ (1))); # 233 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, off_t __len); # 250 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, off_t __offset, off_t __len, int __advise) __attribute__ ((__nothrow__ , __leaf__)); # 272 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, off_t __offset, off_t __len); # 294 "/usr/include/fcntl.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 25 "/usr/include/string.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/string.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 92 "/usr/include/string.h" 3 4 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 123 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 4 # 27 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 160 "/usr/include/string.h" 2 3 4 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 206 "/usr/include/string.h" 3 4 # 231 "/usr/include/string.h" 3 4 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 258 "/usr/include/string.h" 3 4 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 277 "/usr/include/string.h" 3 4 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 310 "/usr/include/string.h" 3 4 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 337 "/usr/include/string.h" 3 4 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 392 "/usr/include/string.h" 3 4 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); # 422 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 440 "/usr/include/string.h" 3 4 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 484 "/usr/include/string.h" 3 4 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 512 "/usr/include/string.h" 3 4 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 529 "/usr/include/string.h" 3 4 extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 552 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 656 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/times.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/times.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 55 "/usr/include/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 29 "/usr/include/x86_64-linux-gnu/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 25 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 25 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 33 "/usr/include/pwd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 4 # 44 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 64 "/usr/include/pwd.h" 2 3 4 # 72 "/usr/include/pwd.h" 3 4 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); # 94 "/usr/include/pwd.h" 3 4 extern struct passwd *fgetpwent (FILE *__stream) __attribute__ ((__nonnull__ (1))); extern int putpwent (const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (const char *__name) __attribute__ ((__nonnull__ (1))); # 139 "/usr/include/pwd.h" 3 4 extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result) __attribute__ ((__nonnull__ (1, 2, 4))); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result) __attribute__ ((__nonnull__ (2, 3, 5))); extern int getpwnam_r (const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result) __attribute__ ((__nonnull__ (1, 2, 3, 5))); # 166 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result) __attribute__ ((__nonnull__ (1, 2, 3, 5))); # 187 "/usr/include/pwd.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/float.h" 1 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/param.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/param.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 1 3 4 # 34 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 1 3 4 # 168 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 143 "/usr/include/limits.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 1 3 4 # 160 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 1 3 4 # 38 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 39 "/usr/include/x86_64-linux-gnu/bits/local_lim.h" 2 3 4 # 161 "/usr/include/x86_64-linux-gnu/bits/posix1_lim.h" 2 3 4 # 144 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix2_lim.h" 1 3 4 # 148 "/usr/include/limits.h" 2 3 4 # 169 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 2 3 4 # 8 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/lib/gcc/x86_64-linux-gnu/6/include-fixed/limits.h" 2 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 30 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 102 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 33 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; # 57 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/signum.h" 1 3 4 # 58 "/usr/include/signal.h" 2 3 4 # 75 "/usr/include/signal.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 76 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 58 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; short int si_addr_lsb; struct { void *_lower; void *_upper; } si_addr_bnd; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 160 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR, BUS_MCEERR_AR, BUS_MCEERR_AO }; # 264 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 320 "/usr/include/x86_64-linux-gnu/bits/siginfo.h" 3 4 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 100 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 4 # 127 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); # 187 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 207 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 243 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 244 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); # 301 "/usr/include/signal.h" 3 4 extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; # 1 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 121 "/usr/include/x86_64-linux-gnu/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 307 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 317 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 49 "/usr/include/x86_64-linux-gnu/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 324 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 92 "/usr/include/x86_64-linux-gnu/sys/ucontext.h" 3 4 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 327 "/usr/include/signal.h" 2 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 362 "/usr/include/signal.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 363 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 29 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/param.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/param.h" 3 4 # 1 "/usr/include/linux/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 1 3 4 # 1 "/usr/include/asm-generic/param.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/param.h" 2 3 4 # 5 "/usr/include/linux/param.h" 2 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/param.h" 2 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/param.h" 2 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 25 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 22 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 200 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 38 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 167 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 168 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 183 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char __ss_padding[(128 - (sizeof (unsigned short int)) - sizeof (unsigned long int))]; unsigned long int __ss_align; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_BATCH = 0x40000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 295 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 322 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 368 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 369 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 402 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 141 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 38 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_MPLS = 137, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135 }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; # 211 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 239 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 376 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 388 "/usr/include/netinet/in.h" 2 3 4 # 503 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 631 "/usr/include/netinet/in.h" 3 4 # 28 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/rpc/netdb.h" 1 3 4 # 42 "/usr/include/rpc/netdb.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 43 "/usr/include/rpc/netdb.h" 2 3 4 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__ , __leaf__)); extern void endrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbyname (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbyname_r (const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); # 33 "/usr/include/netdb.h" 2 3 4 # 42 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 1 3 4 # 26 "/usr/include/x86_64-linux-gnu/bits/netdb.h" 3 4 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 43 "/usr/include/netdb.h" 2 3 4 # 53 "/usr/include/netdb.h" 3 4 extern int *__h_errno_location (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 92 "/usr/include/netdb.h" 3 4 extern void herror (const char *__str) __attribute__ ((__nothrow__ , __leaf__)); extern const char *hstrerror (int __err_num) __attribute__ ((__nothrow__ , __leaf__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (const char *__name); # 155 "/usr/include/netdb.h" 3 4 extern struct hostent *gethostbyname2 (const char *__name, int __af); # 167 "/usr/include/netdb.h" 3 4 extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); # 198 "/usr/include/netdb.h" 3 4 extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (const char *__name); # 237 "/usr/include/netdb.h" 3 4 extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (const char *__name, const char *__proto); extern struct servent *getservbyport (int __port, const char *__proto); # 308 "/usr/include/netdb.h" 3 4 extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (const char *__restrict __name, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (const char *__name); extern struct protoent *getprotobynumber (int __proto); # 374 "/usr/include/netdb.h" 3 4 extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); # 395 "/usr/include/netdb.h" 3 4 extern int setnetgrent (const char *__netgroup); extern void endnetgrent (void); # 412 "/usr/include/netdb.h" 3 4 extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); # 423 "/usr/include/netdb.h" 3 4 extern int innetgr (const char *__netgroup, const char *__host, const char *__user, const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); # 451 "/usr/include/netdb.h" 3 4 extern int rcmd (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p); # 463 "/usr/include/netdb.h" 3 4 extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 479 "/usr/include/netdb.h" 3 4 extern int rexec (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p); # 491 "/usr/include/netdb.h" 3 4 extern int rexec_af (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 505 "/usr/include/netdb.h" 3 4 extern int ruserok (const char *__rhost, int __suser, const char *__remuser, const char *__locuser); # 515 "/usr/include/netdb.h" 3 4 extern int ruserok_af (const char *__rhost, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); # 528 "/usr/include/netdb.h" 3 4 extern int iruserok (uint32_t __raddr, int __suser, const char *__remuser, const char *__locuser); # 539 "/usr/include/netdb.h" 3 4 extern int iruserok_af (const void *__raddr, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); # 551 "/usr/include/netdb.h" 3 4 extern int rresvport (int *__alport); # 560 "/usr/include/netdb.h" 3 4 extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 662 "/usr/include/netdb.h" 3 4 extern int getaddrinfo (const char *__restrict __name, const char *__restrict __service, const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__ , __leaf__)); extern const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__ , __leaf__)); extern int getnameinfo (const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, int __flags); # 713 "/usr/include/netdb.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 22 "/usr/include/search.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/search.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/search.h" 2 3 4 # 44 "/usr/include/search.h" 3 4 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__ , __leaf__)); extern void remque (void *__elem) __attribute__ ((__nothrow__ , __leaf__)); typedef int (*__compar_fn_t) (const void *, const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; # 87 "/usr/include/search.h" 3 4 extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__ , __leaf__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__ , __leaf__)); extern void hdestroy (void) __attribute__ ((__nothrow__ , __leaf__)); # 118 "/usr/include/search.h" 3 4 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (const void *__key, void *const *__rootp, __compar_fn_t __compar); extern void *tdelete (const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (const void *__nodep, VISIT __value, int __level); extern void twalk (const void *__root, __action_fn_t __action); # 164 "/usr/include/search.h" 3 4 extern void *lfind (const void *__key, const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/time.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 26 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 28 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/time.h" 2 3 4 # 55 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 71 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 189 "/usr/include/x86_64-linux-gnu/sys/time.h" 3 4 # 32 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 33 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/user.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/user.h" 3 4 struct user_fpregs_struct { unsigned short int cwd; unsigned short int swd; unsigned short int ftw; unsigned short int fop; __extension__ unsigned long long int rip; __extension__ unsigned long long int rdp; unsigned int mxcsr; unsigned int mxcr_mask; unsigned int st_space[32]; unsigned int xmm_space[64]; unsigned int padding[24]; }; struct user_regs_struct { __extension__ unsigned long long int r15; __extension__ unsigned long long int r14; __extension__ unsigned long long int r13; __extension__ unsigned long long int r12; __extension__ unsigned long long int rbp; __extension__ unsigned long long int rbx; __extension__ unsigned long long int r11; __extension__ unsigned long long int r10; __extension__ unsigned long long int r9; __extension__ unsigned long long int r8; __extension__ unsigned long long int rax; __extension__ unsigned long long int rcx; __extension__ unsigned long long int rdx; __extension__ unsigned long long int rsi; __extension__ unsigned long long int rdi; __extension__ unsigned long long int orig_rax; __extension__ unsigned long long int rip; __extension__ unsigned long long int cs; __extension__ unsigned long long int eflags; __extension__ unsigned long long int rsp; __extension__ unsigned long long int ss; __extension__ unsigned long long int fs_base; __extension__ unsigned long long int gs_base; __extension__ unsigned long long int ds; __extension__ unsigned long long int es; __extension__ unsigned long long int fs; __extension__ unsigned long long int gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; __extension__ unsigned long long int u_tsize; __extension__ unsigned long long int u_dsize; __extension__ unsigned long long int u_ssize; __extension__ unsigned long long int start_code; __extension__ unsigned long long int start_stack; __extension__ long long int signal; int reserved; __extension__ union { struct user_regs_struct* u_ar0; __extension__ unsigned long long int __u_ar0_word; }; __extension__ union { struct user_fpregs_struct* u_fpstate; __extension__ unsigned long long int __u_fpstate_word; }; __extension__ unsigned long long int magic; char u_comm [32]; __extension__ unsigned long long int u_debugreg [8]; }; # 34 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 2 3 4 __extension__ typedef unsigned long long elf_greg_t; # 49 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 63 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; # 82 "/usr/include/x86_64-linux-gnu/sys/procfs.h" 3 4 struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/resource.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/resource.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 131 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 158 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 176 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 }; # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 180 "/usr/include/x86_64-linux-gnu/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; __extension__ union { long int ru_maxrss; __syscall_slong_t __ru_maxrss_word; }; __extension__ union { long int ru_ixrss; __syscall_slong_t __ru_ixrss_word; }; __extension__ union { long int ru_idrss; __syscall_slong_t __ru_idrss_word; }; __extension__ union { long int ru_isrss; __syscall_slong_t __ru_isrss_word; }; __extension__ union { long int ru_minflt; __syscall_slong_t __ru_minflt_word; }; __extension__ union { long int ru_majflt; __syscall_slong_t __ru_majflt_word; }; __extension__ union { long int ru_nswap; __syscall_slong_t __ru_nswap_word; }; __extension__ union { long int ru_inblock; __syscall_slong_t __ru_inblock_word; }; __extension__ union { long int ru_oublock; __syscall_slong_t __ru_oublock_word; }; __extension__ union { long int ru_msgsnd; __syscall_slong_t __ru_msgsnd_word; }; __extension__ union { long int ru_msgrcv; __syscall_slong_t __ru_msgrcv_word; }; __extension__ union { long int ru_nsignals; __syscall_slong_t __ru_nsignals_word; }; __extension__ union { long int ru_nvcsw; __syscall_slong_t __ru_nvcsw_word; }; __extension__ union { long int ru_nivcsw; __syscall_slong_t __ru_nivcsw_word; }; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 328 "/usr/include/x86_64-linux-gnu/bits/resource.h" 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/resource.h" 2 3 4 typedef __id_t id_t; # 42 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 69 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 87 "/usr/include/x86_64-linux-gnu/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 25 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/unistd.h" 2 3 4 # 205 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/posix_opt.h" 1 3 4 # 206 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/environments.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/environments.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/environments.h" 2 3 4 # 210 "/usr/include/unistd.h" 2 3 4 # 220 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 221 "/usr/include/unistd.h" 2 3 4 typedef __ssize_t ssize_t; # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 230 "/usr/include/unistd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 258 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 290 "/usr/include/unistd.h" 3 4 extern int access (const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 307 "/usr/include/unistd.h" 3 4 extern int faccessat (int __fd, const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 337 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 356 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, const void *__buf, size_t __n) ; # 379 "/usr/include/unistd.h" 3 4 extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, const void *__buf, size_t __n, __off_t __offset) ; # 420 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; # 435 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); # 447 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); # 472 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; # 514 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 528 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); # 546 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (const char *__path, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (const char *__path, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (const char *__file, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (const char *__file, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 601 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/x86_64-linux-gnu/bits/confname.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 613 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); # 663 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; # 703 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; # 759 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, const char *__from, int __tofd, const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (const char *__from, int __tofd, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 873 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 57 "/usr/include/getopt.h" 3 4 extern char *optarg; # 71 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 150 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 874 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (const char *__prompt) __attribute__ ((__nonnull__ (1))); extern int fsync (int __fd); # 971 "/usr/include/unistd.h" 3 4 extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); # 995 "/usr/include/unistd.h" 3 4 extern int truncate (const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1018 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1039 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); # 1060 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); # 1083 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1114 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1166 "/usr/include/unistd.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 21 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 1 3 4 # 9 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wchar.h" 1 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 36 "/usr/include/stdint.h" 3 4 # 36 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 65 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 90 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 103 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 119 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 134 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stdint.h" 2 3 4 # 23 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/socket.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/uio.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 200 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/uio.h" 1 3 4 # 43 "/usr/include/x86_64-linux-gnu/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/x86_64-linux-gnu/sys/uio.h" 2 3 4 # 39 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; # 50 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; # 65 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 77 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 120 "/usr/include/x86_64-linux-gnu/sys/uio.h" 3 4 # 27 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 # 38 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/socket.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; # 1 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/bits/socket_type.h" 3 4 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 167 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 168 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 183 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char __ss_padding[(128 - (sizeof (unsigned short int)) - sizeof (unsigned long int))]; unsigned long int __ss_align; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_BATCH = 0x40000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 295 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); # 322 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 368 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/socket.h" 2 3 4 # 369 "/usr/include/x86_64-linux-gnu/bits/socket.h" 2 3 4 # 402 "/usr/include/x86_64-linux-gnu/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/x86_64-linux-gnu/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 113 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); # 137 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); # 174 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 202 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 219 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); # 243 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 261 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 283 "/usr/include/x86_64-linux-gnu/sys/socket.h" 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/x86_64-linux-gnu/bits/in.h" 1 3 4 # 141 "/usr/include/x86_64-linux-gnu/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 38 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_MPLS = 137, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135 }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; # 211 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 239 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 376 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 388 "/usr/include/netinet/in.h" 2 3 4 # 503 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 631 "/usr/include/netinet/in.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.headers/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.utilities.cacheDetails Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.headers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-9GuV4Y/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST check_siginfo_t from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.types Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:13:11: warning: unused variable ‘a’ [-Wunused-variable] siginfo_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:13:1: error: unknown type name ‘__int64’ __int64 a;; ^~~~~~~ /tmp/petsc-9GuV4Y/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:13:8: warning: unused variable ‘a’ [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:13:9: warning: unused variable ‘a’ [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:13:7: warning: unused variable ‘a’ [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.types/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.types/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.types/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.types/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.types/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.types/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.types/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/types.h" 1 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 26 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/types.h" 1 3 4 # 27 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 121 "/usr/include/x86_64-linux-gnu/bits/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/typesizes.h" 1 3 4 # 122 "/usr/include/x86_64-linux-gnu/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 60 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 98 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 132 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 57 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 73 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 91 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 103 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 133 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 146 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 147 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 194 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 216 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 36 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 2 3 4 # 60 "/usr/include/endian.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 1 3 4 # 28 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 29 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/byteswap-16.h" 1 3 4 # 36 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 2 3 4 # 44 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 108 "/usr/include/x86_64-linux-gnu/bits/byteswap.h" 3 4 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 61 "/usr/include/endian.h" 2 3 4 # 217 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/select.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/select.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/select.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 23 "/usr/include/x86_64-linux-gnu/bits/select.h" 2 3 4 # 31 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 46 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/time.h" 1 3 4 # 30 "/usr/include/x86_64-linux-gnu/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 48 "/usr/include/x86_64-linux-gnu/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 66 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 98 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 108 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 120 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 133 "/usr/include/x86_64-linux-gnu/sys/select.h" 3 4 # 220 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 1 3 4 # 24 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 58 "/usr/include/x86_64-linux-gnu/sys/sysmacros.h" 3 4 # 223 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 270 "/usr/include/x86_64-linux-gnu/sys/types.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 22 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 2 3 4 # 60 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 90 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 125 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; signed char __rwelision; unsigned char __pad1[7]; unsigned long int __pad2; unsigned int __flags; } __data; # 220 "/usr/include/x86_64-linux-gnu/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/x86_64-linux-gnu/sys/types.h" 2 3 4 # 3 "/tmp/petsc-9GuV4Y/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:6:17: warning: variable ‘x’ set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.compilers -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.F90 Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.F90:4:43: real(kind=selected_real_kind(10)) d 1 Warning: Unused variable ‘d’ declared at (1) [-Wunused-variable] /tmp/petsc-9GuV4Y/config.types/conftest.F90:3:45: integer(kind=selected_int_kind(10)) i 1 Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable] Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:25:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (x[0]); ^~ /tmp/petsc-9GuV4Y/config.types/conftest.c:26:5: note: ...this statement, but the latter is misleadingly indented as if it is guarded by the ‘if’ { /* SCO 3.2v4 cc rejects this. */ ^ /tmp/petsc-9GuV4Y/config.types/conftest.c:30:9: warning: ‘t’ is used uninitialized in this function [-Wuninitialized] *t++ = 0; ~^~ /tmp/petsc-9GuV4Y/config.types/conftest.c:46:25: warning: ‘b’ is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ~~~~~^~~ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.types/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.types/conftest.c:11:3: error: unknown type name ‘not’ not big endian ^~~ /tmp/petsc-9GuV4Y/config.types/conftest.c:11:11: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before ‘endian’ not big endian ^~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.types/conftest.o -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.types/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.types/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.types/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.types/conftest Executing: /tmp/petsc-9GuV4Y/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:356) Disabled visibility attributes due to static build================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST check from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:158) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:158) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lsocket -lnsl -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:158) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:158) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lfpe -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:158) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:158) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lsocket -lnsl -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:158) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:158) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lfpe -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:263) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:263) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x22): undefined reference to `sin' conftest.c:(.text.startup+0x4f): undefined reference to `floor' conftest.c:(.text.startup+0x7c): undefined reference to `log10' conftest.c:(.text.startup+0xad): undefined reference to `pow' collect2: error: ld returned 1 exit status Popping language C Checking for functions [sin floor log10 pow] in library ['m'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C CheckMath: using math library ['libm.a'] ================================================================================ TEST checkMathErf from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:282) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:282) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.libraries/conftest.c: In function ‘_check_erf’: /tmp/petsc-9GuV4Y/config.libraries/conftest.c:5:74: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:291) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:291) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.libraries/conftest.c: In function ‘_check_tgamma’: /tmp/petsc-9GuV4Y/config.libraries/conftest.c:5:83: warning: variable ‘y’ set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:300) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:300) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:308) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:308) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.libraries/conftest.c: In function ‘_check_log2’: /tmp/petsc-9GuV4Y/config.libraries/conftest.c:5:81: warning: unused variable ‘y’ [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -lm -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkRealtime from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:317) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:317) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/libraries.py:333) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:333) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -ldl -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 22 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 23 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 1 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 # 216 "/usr/lib/gcc/x86_64-linux-gnu/6/include/stddef.h" 3 4 typedef long unsigned int size_t; # 25 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/dlfcn.h" 1 3 4 # 28 "/usr/include/dlfcn.h" 2 3 4 # 52 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 82 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 188 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Executing: gcc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/libraryOptions.py:91) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:91) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_F" to "integer2" ================================================================================ TEST configureCPURelax from config.atomics(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.atomics Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.atomics/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.atomics/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.atomics/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.atomics/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST checkMemcmp from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.functions Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.atomics -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Testing executable /tmp/petsc-9GuV4Y/config.functions/conftest to see if it can be run Executing: /tmp/petsc-9GuV4Y/config.functions/conftest Executing: /tmp/petsc-9GuV4Y/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 # 19 "/usr/include/asm-generic/int-ll64.h" 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 7 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 1 3 4 # 21 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 3 4 # 1 "/usr/include/features.h" 1 3 4 # 364 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 1 3 4 # 415 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/bits/wordsize.h" 1 3 4 # 416 "/usr/include/x86_64-linux-gnu/sys/cdefs.h" 2 3 4 # 365 "/usr/include/features.h" 2 3 4 # 388 "/usr/include/features.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/gnu/stubs-64.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/gnu/stubs.h" 2 3 4 # 389 "/usr/include/features.h" 2 3 4 # 22 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 1 "/usr/include/linux/sysinfo.h" 1 3 4 # 1 "/usr/include/linux/types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/types.h" 1 3 4 # 1 "/usr/include/asm-generic/types.h" 1 3 4 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 4 # 11 "/usr/include/asm-generic/int-ll64.h" 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 3 4 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 4 # 11 "/usr/include/x86_64-linux-gnu/asm/bitsperlong.h" 2 3 4 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 4 # 19 "/usr/include/asm-generic/int-ll64.h" 3 4 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 7 "/usr/include/asm-generic/types.h" 2 3 4 # 5 "/usr/include/x86_64-linux-gnu/asm/types.h" 2 3 4 # 5 "/usr/include/linux/types.h" 2 3 4 # 1 "/usr/include/linux/posix_types.h" 1 3 4 # 1 "/usr/include/linux/stddef.h" 1 3 4 # 5 "/usr/include/linux/posix_types.h" 2 3 4 # 24 "/usr/include/linux/posix_types.h" 3 4 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 1 3 4 # 1 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 1 3 4 # 10 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 3 4 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 4 # 14 "/usr/include/asm-generic/posix_types.h" 3 4 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 4 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/x86_64-linux-gnu/asm/posix_types_64.h" 2 3 4 # 7 "/usr/include/x86_64-linux-gnu/asm/posix_types.h" 2 3 4 # 36 "/usr/include/linux/posix_types.h" 2 3 4 # 9 "/usr/include/linux/types.h" 2 3 4 # 27 "/usr/include/linux/types.h" 3 4 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 4 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 4 # 25 "/usr/include/x86_64-linux-gnu/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^~~~~ /tmp/petsc-9GuV4Y/config.functions/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.functions/conftest.c:17:30: warning: implicit declaration of function ‘sysinfo’ [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vprintf’ char vprintf(); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkVFPrintf from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vfprintf’ char vfprintf(); ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VFPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.functions/conftest.c:6:1: warning: implicit declaration of function ‘_vsnprintf’ [-Wimplicit-function-declaration] _vsnprintf(0,0,0,0); ^~~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { _vsnprintf(0,0,0,0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0xf): undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status Checking for functions [vsnprintf] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘vsnprintf’ char vsnprintf(); ^~~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl ================================================================================ TEST checkNanosleep from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:206) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:206) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:182) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:182) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:192) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:192) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-9GuV4Y/config.functions/conftest.c:6:5: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^~~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:198) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:198) Checks whether the variable argument list functionality is working Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _mkdir time sysctlbyname stricmp] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:16:6: warning: conflicting types for built-in function ‘snprintf’ char snprintf(); ^~~~~~~~ /tmp/petsc-9GuV4Y/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘bzero’ char bzero(); ^~~~~ /tmp/petsc-9GuV4Y/config.functions/conftest.c:36:6: warning: conflicting types for built-in function ‘fork’ char fork(); ^~~~ /tmp/petsc-9GuV4Y/config.functions/conftest.c:48:6: warning: conflicting types for built-in function ‘strcasecmp’ char strcasecmp(); ^~~~~~~~~~ /tmp/petsc-9GuV4Y/config.functions/conftest.c:52:6: warning: conflicting types for built-in function ‘memmove’ char memmove(); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _mkdir(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x3f): warning: the `getwd' function is dangerous and should not be used. conftest.c:(.text.startup+0x15): undefined reference to `_sleep' conftest.c:(.text.startup+0x38): undefined reference to `_getcwd' conftest.c:(.text.startup+0x4d): undefined reference to `_lseek' conftest.c:(.text.startup+0x5b): undefined reference to `_access' conftest.c:(.text.startup+0x93): undefined reference to `_snprintf' conftest.c:(.text.startup+0xb6): undefined reference to `sbreak' conftest.c:(.text.startup+0xe7): undefined reference to `_set_output_format' conftest.c:(.text.startup+0xee): undefined reference to `PXFGETARG' conftest.c:(.text.startup+0x13b): undefined reference to `_mkdir' conftest.c:(.text.startup+0x149): undefined reference to `sysctlbyname' conftest.c:(.text.startup+0x150): undefined reference to `stricmp' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:17:6: warning: conflicting types for built-in function ‘bzero’ char bzero(); ^~~~~ /tmp/petsc-9GuV4Y/config.functions/conftest.c:26:6: warning: conflicting types for built-in function ‘fork’ char fork(); ^~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:19:6: warning: conflicting types for built-in function ‘strcasecmp’ char strcasecmp(); ^~~~~~~~~~ /tmp/petsc-9GuV4Y/config.functions/conftest.c:23:6: warning: conflicting types for built-in function ‘memmove’ char memmove(); ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_sleep' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:13:6: warning: conflicting types for built-in function ‘snprintf’ char snprintf(); ^~~~~~~~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [getwd] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_lseek' collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_access' collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Checking for functions [sysctlbyname] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `stricmp' collect2: error: ld returned 1 exit status ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: gfortran -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.libraries -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.F90 Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: gfortran -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -ffree-line-length-0 -Wno-unused-dummy-argument -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language FC Popping language FC Pushing language C Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C Checking for functions [get_command_argument_] in library [''] ['-L/usr/lib/gcc/x86_64-linux-gnu/6', '-L/usr/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lgfortran', '-lm', '-lquadmath'] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `get_command_argument_' collect2: error: ld returned 1 exit status Popping language C Checking for functions [getarg_] in library [''] ['-L/usr/lib/gcc/x86_64-linux-gnu/6', '-L/usr/lib/x86_64-linux-gnu', '-L/lib/x86_64-linux-gnu', '-lgfortran', '-lm', '-lgfortran', '-lm', '-lquadmath'] Pushing language C Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.libraries/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/config.libraries/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.libraries/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.libraries/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `getarg_' collect2: error: ld returned 1 exit status Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Checking for functions [ipxfargc_] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [iargc_] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.o: In function `main': conftest.c:(.text.startup+0x7): undefined reference to `iargc_' collect2: error: ld returned 1 exit status Checking for functions [GETARG@16] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.functions/conftest.c:13:12: error: stray ‘@’ in program char GETARG@16(); ^ /tmp/petsc-9GuV4Y/config.functions/conftest.c:13:13: error: expected ‘=’, ‘,’, ‘;’, ‘asm’ or ‘__attribute__’ before numeric constant char GETARG@16(); ^~ /tmp/petsc-9GuV4Y/config.functions/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.functions/conftest.c:21:27: error: missing ')' after "defined" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-9GuV4Y/config.functions/conftest.c:21:28: error: missing binary operator before token "16" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^~ /tmp/petsc-9GuV4Y/config.functions/conftest.c:24:7: error: stray ‘@’ in program GETARG@16(); ^ /tmp/petsc-9GuV4Y/config.functions/conftest.c:24:1: error: ‘GETARG’ undeclared (first use in this function) GETARG@16(); ^~~~~~ /tmp/petsc-9GuV4Y/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-9GuV4Y/config.functions/conftest.c:24:8: error: expected ‘;’ before numeric constant GETARG@16(); ^~ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) GETARG@16_will_always_fail_with_ENOSYS(); #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.functions/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-9GuV4Y/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.functions/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -lgfortran -lm -lgfortran -lm -lquadmath Defined "HAVE__GFORTRAN_IARGC" to "1" ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^compilation terminated.: Checking for header: fpxcp.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^compilation terminated.: Checking for header: floatingpoint.h Executing: gcc -E -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.headers /tmp/petsc-9GuV4Y/config.headers/conftest.c stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "" # 1 "" # 31 "" # 1 "/usr/include/stdc-predef.h" 1 3 4 # 32 "" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" # 1 "/tmp/petsc-9GuV4Y/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2 # 1 "/tmp/petsc-9GuV4Y/config.headers/conffix.h" 1 # 3 "/tmp/petsc-9GuV4Y/config.headers/conftest.c" 2stderr: /tmp/petsc-9GuV4Y/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-9GuV4Y/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: stderr: In file included from /usr/include/stdlib.h:24:0, from /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.c:4: /usr/include/features.h:148:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMissingDefines from config.utilities.missing(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.utilities.missing Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.missing -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c:6:9: warning: unused variable ‘foo’ [-Wunused-variable] u_short foo; ^~~ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:110) Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:135) Executing: gcc -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-9GuV4Y/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/config.utilities.missing/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/scalarTypes.py:37) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes Executing: gcc -c -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -I/tmp/petsc-9GuV4Y/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_ISNORMAL" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -I/tmp/petsc-9GuV4Y/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_ISNAN" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -I/tmp/petsc-9GuV4Y/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Defined "HAVE_ISINF" to "1" Executing: gcc -c -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -I/tmp/petsc-9GuV4Y/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c:6:24: warning: implicit declaration of function ‘_isnan’ [-Wimplicit-function-declaration] double b = 2.0;int a = _isnan(b); ^~~~~~ /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0;int a = _isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o: In function `main': conftest.c:(.text.startup+0x12): undefined reference to `_isnan' collect2: error: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-9GuV4Y/config.utilities.closure -I/tmp/petsc-9GuV4Y/config.compilers -I/tmp/petsc-9GuV4Y/config.setCompilers -I/tmp/petsc-9GuV4Y/config.headers -I/tmp/petsc-9GuV4Y/config.utilities.cacheDetails -I/tmp/petsc-9GuV4Y/config.types -I/tmp/petsc-9GuV4Y/config.atomics -I/tmp/petsc-9GuV4Y/config.libraries -I/tmp/petsc-9GuV4Y/config.functions -I/tmp/petsc-9GuV4Y/config.utilities.featureTestMacros -I/tmp/petsc-9GuV4Y/config.utilities.missing -I/tmp/petsc-9GuV4Y/PETSc.options.scalarTypes -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c: In function ‘main’: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c:6:24: warning: implicit declaration of function ‘_finite’ [-Wimplicit-function-declaration] double b = 2.0;int a = _finite(b); ^~~~~~~ /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.c:6:20: warning: unused variable ‘a’ [-Wunused-variable] double b = 2.0;int a = _finite(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -O3 -march=native -mtune=native /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o -L/usr/lib/gcc/x86_64-linux-gnu/6 -L/usr/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-9GuV4Y/PETSc.options.scalarTypes/conftest.o: In function `main': conftest.c:(.text.startup+0x12): undefined reference to `_finite' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/home/lukas/gtectonTest/petsc-3.8.2/config/PETSc/options/scalarTypes.py:77) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:77) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double ================================================================================ TEST configureMkdir from config.programs(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/programs.py:23) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:23) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/programs.py:45) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:45) Check for autoreconf Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.programs Executing: cd /tmp/petsc-9GuV4Y/config.programs/autoconfdir&&/usr/bin/autoreconf autoreconf test successful! Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/programs.py:72) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:72) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-9GuV4Y/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-9GuV4Y/config.programs/diff1" "/tmp/petsc-9GuV4Y/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /home/lukas/ps...not found Checking for program /home/lukas/gtectonTest/petsc-3.8.2/bin/win32fe/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" Checking for program /usr/local/bin/m4...not found Checking for program /usr/bin/m4...found Defined make macro "M4" to "/usr/bin/m4" ================================================================================ TEST configureMake from config.packages.make(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/packages/make.py:82) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:82) Check for user specified make - or gmake, make Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /bin/gmake...not found Checking for program /usr/local/games/gmake...not found Checking for program /usr/games/gmake...not found Checking for program /home/lukas/gmake...not found Checking for program /home/lukas/gtectonTest/petsc-3.8.2/bin/win32fe/gmake...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" Executing: /usr/bin/make --version stdout: GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. ================================================================================ TEST configureCheckGNUMake from config.packages.make(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/packages/make.py:119) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:119) Setup other GNU make stuff Executing: /usr/bin/make --version stdout: GNU Make 4.1 Built for x86_64-pc-linux-gnu Copyright (C) 1988-2014 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/packages/make.py:157) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:157) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "NPMAX" to "8" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" Pushing language C ================================================================================ TEST checkDependencies from config.packages.OpenMPI(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/package.py:719) TESTING: checkDependencies from config.packages.OpenMPI(config/BuildSystem/config/package.py:719) ================================================================================ TEST configureLibrary from config.packages.OpenMPI(/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/package.py:744) TESTING: configureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:744) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional OpenMPI Looking for OPENMPI at git.openmpi, hg.openmpi or a directory starting with ['openmpi'] Found a copy of OPENMPI in openmpi-1.8.5 Pushing language C All intermediate test results are stored in /tmp/petsc-9GuV4Y/config.packages.OpenMPI Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Executing: gfortran -v Popping language FC Pushing language FC Popping language FC Have to rebuild OPENMPI, /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/openmpi.petscconf != /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/lib/petsc/conf/pkg.conf.openmpi =============================================================================== Running configure on OPENMPI; this may take several minutes =============================================================================== Executing: cd /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5 && ./configure --prefix=/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64 MAKE=/usr/bin/make --libdir=/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/lib CC="gcc" CFLAGS="-fstack-protector -O3 -march=native -mtune=native" AR="/usr/bin/ar" ARFLAGS="cr" CXX="g++" CXXFLAGS="-fstack-protector -O3 -march=native -mtune=native" F90="gfortran" F90FLAGS="-ffree-line-length-0 -O3 -march=native -mtune=native" F77="gfortran" FFLAGS="-ffree-line-length-0 -O3 -march=native -mtune=native" FC="gfortran" FCFLAGS="-ffree-line-length-0 -O3 -march=native -mtune=native" --disable-shared --with-rsh=ssh MAKE=/usr/bin/make --enable-shared=no --enable-static=yes --disable-vt --with-hwloc=internal stdout: ============================================================================ == Configuring Open MPI ============================================================================ *** Startup tests checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking for style of include used by /usr/bin/make... GNU checking how to create a ustar tar archive... gnutar checking dependency style of gcc... gcc3 checking whether /usr/bin/make supports nested variables... yes *** Checking versions checking for repo version... v1.8.4-333-g039fb11 checking Open MPI version... 1.8.5 checking Open MPI release date... May 05, 2015 checking Open MPI repository version... v1.8.4-333-g039fb11 checking for repo version... v1.8.4-333-g039fb11 checking Open MPI Run-Time Environment version... 1.8.5 checking Open MPI Run-Time Environment release date... May 05, 2015 checking Open MPI Run-Time Environment repository version... v1.8.4-333-g039fb11 checking for repo version... v1.8.4-333-g039fb11 checking Open SHMEM version... 1.8.5 checking Open SHMEM release date... May 05, 2015 checking Open SHMEM repository version... v1.8.4-333-g039fb11 checking for repo version... v1.8.4-333-g039fb11 checking Open Portable Access Layer version... 1.8.5 checking Open Portable Access Layer release date... May 05, 2015 checking Open Portable Access Layer repository version... v1.8.4-333-g039fb11 checking for bootstrap Autoconf version... 2.69 checking for bootstrap Automake version... 1.12 checking for boostrap Libtool version... 2.4.2 *** Initialization, setup configure: builddir: /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5 configure: srcdir: /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5 installing to directory "/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64" *** OPAL Configuration options checking if want to run code coverage... no checking if want to compile with branch probabilities... no checking if want to debug memory usage... no checking if want to profile memory usage... no checking if want developer-level compiler pickyness... no checking if want developer-level debugging code... no checking if want to install project-internal header files... no checking if want pretty-print stacktrace... yes checking if want pty support... yes checking if want weak symbol support... yes checking if want dlopen support... yes checking if want heterogeneous support... no checking if want IPv6 support... no checking if want package/brand string... Open MPI lukas@debian9 Distribution checking if want ident string... 1.8.5 checking if want to use an alternative checksum algo for messages... no checking maximum length of processor name... 256 checking maximum length of error string... 256 checking maximum length of object name... 64 checking maximum length of info key... 36 checking maximum length of info val... 256 checking maximum length of port name... 1024 checking maximum length of datarep string... 128 checking if want getpwuid support... yes checking __NetBSD__... no checking __FreeBSD__... no checking __OpenBSD__... no checking __DragonFly__... no checking __386BSD__... no checking __bsdi__... no checking __APPLE__... no checking __linux__... yes checking __sun__... no checking __sun... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking for struct sockaddr_in... yes checking if --with-cuda is set... not set (--with-cuda=) checking for struct CUipcMemHandle_st.reserved... no checking whether CU_POINTER_ATTRIBUTE_SYNC_MEMOPS is declared... no checking whether cuPointerGetAttributes is declared... no checking if have cuda support... no *** ORTE Configuration options checking if want full RTE support... yes checking if want orterun "--prefix" behavior to be enabled by default... no checking if want sensors... no checking if want orte static ports... yes *** OMPI Configuration options checking if want compile-time warnings inside of mpi.h... yes checking if want sparse process groups... no checking if want peruse support... no checking if want Fortran MPI bindings... yes (all/default) checking if want PMPI... yes checking if want C++ bindings... yes checking if want MPI::SEEK_SET support... yes checking if want run-time MPI parameter checking... runtime checking which 'use mpi_f08' implementation to use... regular (no subarray support) *** OSHMEM Configuration options checking if want oshmem... yes checking if want SGI/Quadrics compatibility mode... yes checking if want OSHMEM API parameter checking... never checking for on_exit... yes checking if want pshmem... yes checking if want to build OSHMEM fortran bindings... yes checking if want wrapper compiler rpath support... yes ============================================================================ == Compiler and preprocessor tests ============================================================================ *** C compiler and preprocessor checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc and cc understand -c and -o together... yes checking for gcc option to accept ISO C99... none needed checking for the C compiler vendor... gnu checking for ANSI C header files... (cached) yes checking if gcc supports -finline-functions... yes checking if gcc supports -fno-strict-aliasing... yes checking if gcc supports __builtin_expect... yes checking if gcc supports __builtin_prefetch... yes checking if gcc supports __builtin_clz... yes checking for C optimization flags... -DNDEBUG -fstack-protector -O3 -march=native -mtune=native -finline-functions -fno-strict-aliasing checking for Interix environment... no checking for C ident string support... #ident checking for int8_t... yes checking for uint8_t... yes checking for int16_t... yes checking for uint16_t... yes checking for int32_t... yes checking for uint32_t... yes checking for int64_t... yes checking for uint64_t... yes checking for int128_t... no checking for uint128_t... no checking for long long... yes checking for __float128... yes checking for long double... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for intptr_t... yes checking for uintptr_t... yes checking for mode_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of __float128... 16 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking size of void *... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of wchar_t... 4 checking alignment of _Bool... 1 checking alignment of int8_t... 1 checking alignment of int16_t... 2 checking alignment of int32_t... 4 checking alignment of int64_t... 8 checking alignment of char... 1 checking alignment of short... 2 checking alignment of wchar_t... 4 checking alignment of int... 4 checking alignment of long... 8 checking alignment of long long... 8 checking alignment of float... 4 checking alignment of double... 8 checking alignment of long double... 16 checking alignment of __float128... 16 checking alignment of float _Complex... 4 checking alignment of double _Complex... 8 checking alignment of long double _Complex... 16 checking alignment of void *... 8 checking alignment of size_t... 8 checking for C bool type... no checking size of _Bool... 1 checking for weak symbol support... yes checking for weak symbol support... yes checking for functional offsetof macro... yes *** OpenSHMEM profiling checking if pshmem will be enabled... yes (weak symbols supported) *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for the C++ compiler vendor... gnu checking if g++ supports -finline-functions... yes checking if C and C++ are link compatible... yes checking for C++ optimization flags... -DNDEBUG -fstack-protector -O3 -march=native -mtune=native -finline-functions checking size of bool... 1 checking alignment of bool... 1 *** C++ compiler and preprocessor checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking if C++ compiler works... yes checking if g++ supports -finline-functions... yes checking if C and C++ are link compatible... (cached) yes checking for C++ optimization flags... -DNDEBUG -fstack-protector -O3 -march=native -mtune=native -finline-functions checking size of bool... (cached) 1 checking alignment of bool... (cached) 1 checking if able to build the MPI C++ bindings... yes checking for the C++ compiler vendor... (cached) gnu checking if want C++ exception handling... no checking for C++ template_repository_directory... not used checking for C++ compiler template parameters... none needed checking for C++ ident string support... #ident checking if g++ supports __builtin_expect... yes checking if g++ supports __builtin_prefetch... yes checking if g++ supports const_cast<> properly... yes *** Compiler characteristics checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(deprecated_argument)... yes checking for __attribute__(format)... yes checking for __attribute__(format_funcptr)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(noinline)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(noreturn_funcptr)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(visibility)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking for __attribute__(destructor)... yes checking for compiler familyid... 1 checking for compiler familyname... GNU checking for compiler version... 393984 checking for compiler version_str... 6.3.0 *** Java compiler checking OSX locations... not found checking Linux locations... found (/usr/lib/jvm/java-1.8.0-openjdk-amd64/include) checking --with-jdk-bindir value... sanity check ok (/usr/bin) checking --with-jdk-headers value... sanity check ok (/usr/lib/jvm/java-1.8.0-openjdk-amd64/include) checking for javac... /usr/bin/javac checking for javah... /usr/bin/javah checking for jar... /usr/bin/jar checking jni.h usability... yes checking jni.h presence... yes checking for jni.h... yes checking Java support available... yes *** Java MPI bindings checking if want Java bindings... no *** Assembler checking dependency style of gcc... gcc3 checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking for fgrep... /bin/grep -F checking if need to remove -g from CCASFLAGS... no checking whether to enable smp locks... yes checking if .proc/endp is needed... no checking directive for setting text section... .text checking directive for exporting symbols... .globl checking for objdump... objdump checking if .note.GNU-stack is needed... yes checking suffix for labels... : checking prefix for global symbol labels... checking prefix for lsym labels... .L checking prefix for function in .type... @ checking if .size is needed... yes checking if .align directive takes logarithmic value... no checking if gcc supports GCC inline assembly... yes checking if gcc supports DEC inline assembly... no checking if gcc supports XLC inline assembly... no checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1 checking for assembly architecture... AMD64 checking for builtin atomics... BUILTIN_NO checking for perl... perl checking for pre-built assembly file... yes (atomic-amd64-linux.s) checking for atomic assembly filename... atomic-amd64-linux.s *** Fortran compiler checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether ln -s works... yes checking if Fortran compiler works... yes checking for extra arguments to build a shared library... none needed checking for Fortran flag to compile .f files... none checking for Fortran flag to compile .f90 files... none checking to see if Fortran compilers need additional linker flags... none checking external symbol convention... single underscore checking if C and Fortran are link compatible... yes checking to see if Fortran compiler likes the C++ exception flags... skipped (no C++ exceptions flags) checking to see if mpifort compiler needs additional linker flags... none checking if Fortran compiler supports CHARACTER... yes checking size of Fortran CHARACTER... 1 checking for C type corresponding to CHARACTER... char checking alignment of Fortran CHARACTER... 1 checking for corresponding KIND value of CHARACTER... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... 1 checking if Fortran compiler supports LOGICAL... yes checking size of Fortran LOGICAL... 4 checking for C type corresponding to LOGICAL... int checking alignment of Fortran LOGICAL... 4 checking for corresponding KIND value of LOGICAL... C_INT checking KIND value of Fortran C_INT... 4 checking if Fortran compiler supports LOGICAL*1... yes checking size of Fortran LOGICAL*1... 1 checking for C type corresponding to LOGICAL*1... char checking alignment of Fortran LOGICAL*1... 1 checking for corresponding KIND value of LOGICAL*1... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports LOGICAL*2... yes checking size of Fortran LOGICAL*2... 2 checking for C type corresponding to LOGICAL*2... short checking alignment of Fortran LOGICAL*2... 2 checking for corresponding KIND value of LOGICAL*2... C_SHORT checking KIND value of Fortran C_SHORT... 2 checking if Fortran compiler supports LOGICAL*4... yes checking size of Fortran LOGICAL*4... 4 checking for C type corresponding to LOGICAL*4... int checking alignment of Fortran LOGICAL*4... 4 checking for corresponding KIND value of LOGICAL*4... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports LOGICAL*8... yes checking size of Fortran LOGICAL*8... 8 checking for C type corresponding to LOGICAL*8... long long checking alignment of Fortran LOGICAL*8... 8 checking for corresponding KIND value of LOGICAL*8... C_LONG_LONG checking KIND value of Fortran C_LONG_LONG... 8 checking if Fortran compiler supports INTEGER... yes checking size of Fortran INTEGER... 4 checking for C type corresponding to INTEGER... int checking alignment of Fortran INTEGER... 4 checking for corresponding KIND value of INTEGER... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports INTEGER*1... yes checking size of Fortran INTEGER*1... 1 checking for C type corresponding to INTEGER*1... char checking alignment of Fortran INTEGER*1... 1 checking for corresponding KIND value of INTEGER*1... C_SIGNED_CHAR checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1 checking if Fortran compiler supports INTEGER*2... yes checking size of Fortran INTEGER*2... 2 checking for C type corresponding to INTEGER*2... short checking alignment of Fortran INTEGER*2... 2 checking for corresponding KIND value of INTEGER*2... C_SHORT checking KIND value of Fortran C_SHORT... (cached) 2 checking if Fortran compiler supports INTEGER*4... yes checking size of Fortran INTEGER*4... 4 checking for C type corresponding to INTEGER*4... int checking alignment of Fortran INTEGER*4... 4 checking for corresponding KIND value of INTEGER*4... C_INT checking KIND value of Fortran C_INT... (cached) 4 checking if Fortran compiler supports INTEGER*8... yes checking size of Fortran INTEGER*8... 8 checking for C type corresponding to INTEGER*8... long long checking alignment of Fortran INTEGER*8... 8 checking for corresponding KIND value of INTEGER*8... C_LONG_LONG checking KIND value of Fortran C_LONG_LONG... (cached) 8 checking if Fortran compiler supports INTEGER*16... yes checking size of Fortran INTEGER*16... 16 checking for C type corresponding to INTEGER*16... not found checking for corresponding KIND value of INTEGER*16... 0 checking KIND value of Fortran 0... 0 checking if Fortran compiler supports REAL... yes checking size of Fortran REAL... 4 checking for C type corresponding to REAL... float checking alignment of Fortran REAL... 4 checking for corresponding KIND value of REAL... C_FLOAT checking KIND value of Fortran C_FLOAT... 4 checking if Fortran compiler supports REAL*2... no checking if Fortran compiler supports REAL*4... yes checking size of Fortran REAL*4... 4 checking for C type corresponding to REAL*4... float checking alignment of Fortran REAL*4... 4 checking for corresponding KIND value of REAL*4... C_FLOAT checking KIND value of Fortran C_FLOAT... (cached) 4 checking if Fortran compiler supports REAL*8... yes checking size of Fortran REAL*8... 8 checking for C type corresponding to REAL*8... double checking alignment of Fortran REAL*8... 8 checking for corresponding KIND value of REAL*8... C_DOUBLE checking KIND value of Fortran C_DOUBLE... 8 checking if Fortran compiler supports REAL*16... yes checking size of Fortran REAL*16... 16 checking for C type corresponding to REAL*16... long double checking alignment of Fortran REAL*16... 16 checking for corresponding KIND value of REAL*16... C_LONG_DOUBLE checking KIND value of Fortran C_LONG_DOUBLE... 10 checking for C type matching bit representation of REAL*16... pending checking if long double == REAL*16... no checking if gnu compiler __float128 == REAL*16... works! checking for C type matching bit representation of REAL*16... yes checking if Fortran compiler supports DOUBLE PRECISION... yes checking size of Fortran DOUBLE PRECISION... 8 checking for C type corresponding to DOUBLE PRECISION... double checking alignment of Fortran DOUBLE PRECISION... 8 checking for corresponding KIND value of DOUBLE PRECISION... C_DOUBLE checking KIND value of Fortran C_DOUBLE... (cached) 8 checking if Fortran compiler supports COMPLEX... yes checking size of Fortran COMPLEX... 8 checking for C type corresponding to COMPLEX... float _Complex checking alignment of Fortran COMPLEX... 4 checking for corresponding KIND value of COMPLEX... C_FLOAT_COMPLEX checking KIND value of Fortran C_FLOAT_COMPLEX... 4 checking if Fortran compiler supports COMPLEX*4... no checking if Fortran compiler supports COMPLEX*8... yes checking size of Fortran COMPLEX*8... 8 checking for C type corresponding to COMPLEX*8... float _Complex checking alignment of Fortran COMPLEX*8... 4 checking for corresponding KIND value of COMPLEX*8... C_FLOAT_COMPLEX checking KIND value of Fortran C_FLOAT_COMPLEX... (cached) 4 checking if Fortran compiler supports COMPLEX*16... yes checking size of Fortran COMPLEX*16... 16 checking for C type corresponding to COMPLEX*16... double _Complex checking alignment of Fortran COMPLEX*16... 8 checking for corresponding KIND value of COMPLEX*16... C_DOUBLE_COMPLEX checking KIND value of Fortran C_DOUBLE_COMPLEX... 8 checking if Fortran compiler supports COMPLEX*32... yes checking size of Fortran COMPLEX*32... 32 checking for C type corresponding to COMPLEX*32... long double _Complex checking alignment of Fortran COMPLEX*32... 16 checking for corresponding KIND value of COMPLEX*32... C_LONG_DOUBLE_COMPLEX checking KIND value of Fortran C_LONG_DOUBLE_COMPLEX... 10 checking if Fortran compiler supports DOUBLE COMPLEX... yes checking size of Fortran DOUBLE COMPLEX... 16 checking for C type corresponding to DOUBLE COMPLEX... double _Complex checking alignment of Fortran DOUBLE COMPLEX... 8 checking for corresponding KIND value of DOUBLE COMPLEX... C_DOUBLE_COMPLEX checking KIND value of Fortran C_DOUBLE_COMPLEX... (cached) 8 checking for max Fortran MPI handle index... 2147483647 checking Fortran value for .TRUE. logical type... 1 checking for correct handling of Fortran logical arrays... yes checking max supported Fortran array rank... 7 checking for the value of MPI_STATUS_SIZE... 6 Fortran INTEGERs checking KIND value of Fortran C_INT16_T... 2 checking KIND value of Fortran C_INT32_T... 4 checking KIND value of Fortran C_INT64_T... 8 checking if building Fortran mpif.h bindings... yes checking if Fortran compiler supports INTERFACE... yes checking if Fortran compiler supports ISO_FORTRAN_ENV... yes checking if Fortran compiler supports STORAGE_SIZE for relevant types... yes checking for Fortran compiler module include flag... -I checking Fortran compiler ignore TKR syntax... not cached; checking variants checking for Fortran compiler support of TYPE(*), DIMENSION(*)... no checking for Fortran compiler support of !GCC$ ATTRIBUTES NO_ARG_CHECK... yes checking Fortran compiler ignore TKR syntax... 1:type(*), dimension(*):!GCC$ ATTRIBUTES NO_ARG_CHECK :: checking if Fortran compiler supports ISO_C_BINDING... yes checking if building Fortran 'use mpi' bindings... yes checking if Fortran compiler supports SUBROUTINE BIND(C)... yes checking if Fortran compiler supports TYPE, BIND(C)... yes checking if Fortran compiler supports TYPE(type), BIND(C, NAME="name")... yes checking if Fortran compiler supports PROCEDURE... yes checking if Fortran compiler supports optional arguments... yes checking if Fortran compiler supports C_FUNLOC/TS 29113... yes checking if Fortran compiler supports PRIVATE... yes checking if Fortran compiler supports PROTECTED... yes checking if Fortran compiler supports ABSTRACT... yes checking if Fortran compiler supports ASYNCHRONOUS... yes checking size of Fortran type(test_mpi_handle)... 4 checking Fortran compiler F08 assumed rank syntax... not cached; checking checking for Fortran compiler support of TYPE(*), DIMENSION(..)... yes checking Fortran compiler F08 assumed rank syntax... yes checking which mpi_f08 implementation to build... "good" compiler, no array subsections checking if building Fortran 'use mpi_f08' bindings... yes ============================================================================ == Header file tests ============================================================================ checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking err.h usability... yes checking err.h presence... yes checking for err.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking for inttypes.h... (cached) yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking libutil.h usability... no checking libutil.h presence... no checking for libutil.h... no checking for memory.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for netinet/tcp.h... (cached) yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking pty.h usability... yes checking pty.h presence... yes checking for pty.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking stropts.h usability... yes checking stropts.h presence... yes checking for stropts.h... yes checking sys/fcntl.h usability... yes checking sys/fcntl.h presence... yes checking for sys/fcntl.h... yes checking sys/ipc.h usability... yes checking sys/ipc.h presence... yes checking for sys/ipc.h... yes checking sys/shm.h usability... yes checking sys/shm.h presence... yes checking for sys/shm.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/stat.h... (cached) yes checking sys/statfs.h usability... yes checking sys/statfs.h presence... yes checking for sys/statfs.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/tree.h usability... no checking sys/tree.h presence... no checking for sys/tree.h... no checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking net/uio.h usability... no checking net/uio.h presence... no checking for net/uio.h... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking syslog.h usability... yes checking syslog.h presence... yes checking for syslog.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking termios.h usability... yes checking termios.h presence... yes checking for termios.h... yes checking ulimit.h usability... yes checking ulimit.h presence... yes checking for ulimit.h... yes checking for unistd.h... (cached) yes checking util.h usability... no checking util.h presence... no checking for util.h... no checking utmp.h usability... yes checking utmp.h presence... yes checking for utmp.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking crt_externs.h usability... no checking crt_externs.h presence... no checking for crt_externs.h... no checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking mntent.h usability... yes checking mntent.h presence... yes checking for mntent.h... yes checking paths.h usability... yes checking paths.h presence... yes checking for paths.h... yes checking ioLib.h usability... no checking ioLib.h presence... no checking for ioLib.h... no checking sockLib.h usability... no checking sockLib.h presence... no checking for sockLib.h... no checking hostLib.h usability... no checking hostLib.h presence... no checking for hostLib.h... no checking shlwapi.h usability... no checking shlwapi.h presence... no checking for shlwapi.h... no checking sys/synch.h usability... no checking sys/synch.h presence... no checking for sys/synch.h... no checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking db.h usability... no checking db.h presence... no checking for db.h... no checking ndbm.h usability... no checking ndbm.h presence... no checking for ndbm.h... no checking for sys/mount.h... yes checking for sys/sysctl.h... yes checking for net/if.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking if works... yes ============================================================================ == Type tests ============================================================================ checking size of pid_t... 4 checking for socklen_t... yes checking for struct sockaddr_in... (cached) yes checking for struct sockaddr_in6... yes checking for struct sockaddr_storage... yes checking whether AF_UNSPEC is declared... yes checking whether PF_UNSPEC is declared... yes checking whether AF_INET6 is declared... yes checking whether PF_INET6 is declared... yes checking if SA_RESTART defined in signal.h... yes checking for struct sockaddr.sa_len... no checking for struct dirent.d_type... yes checking for siginfo_t.si_fd... yes checking for siginfo_t.si_band... yes checking for struct statfs.f_type... yes checking for struct statfs.f_fstypename... no checking for struct statvfs.f_basetype... no checking for struct statvfs.f_fstypename... no checking for pointer diff type... ptrdiff_t (size: 8) checking for type of MPI_Aint... ptrdiff_t (size: 8) checking for type of MPI_Count... long long (size: 8) checking for type of MPI_Offset... long long (size: 8) checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG checking for MPI_INTEGER_KIND... 4 checking for MPI_ADDRESS_KIND... 8 checking for MPI_COUNT_KIND... 8 checking for MPI_OFFSET_KIND... 8 checking the linker for support for the -fini option... yes ============================================================================ == Library and Function tests ============================================================================ checking for library containing openpty... -lutil checking for library containing gethostbyname... none required checking for library containing socket... none required checking for library containing sched_yield... none required checking for library containing dirname... none required checking for library containing ceil... -lm checking for asprintf... yes checking for snprintf... yes checking for vasprintf... yes checking for vsnprintf... yes checking for openpty... yes checking for isatty... yes checking for getpwuid... yes checking for fork... yes checking for waitpid... yes checking for execve... yes checking for pipe... yes checking for ptsname... yes checking for setsid... yes checking for mmap... yes checking for tcgetpgrp... yes checking for posix_memalign... yes checking for strsignal... yes checking for sysconf... yes checking for syslog... yes checking for vsyslog... yes checking for regcmp... no checking for regexec... yes checking for regfree... yes checking for _NSGetEnviron... no checking for socketpair... yes checking for strncpy_s... no checking for usleep... yes checking for mkfifo... yes checking for dbopen... no checking for dbm_open... no checking for statfs... yes checking for statvfs... yes checking for setpgid... yes checking for setenv... yes checking for htonl define... no checking for htonl... yes checking whether va_copy is declared... yes checking whether __va_copy is declared... yes checking whether __func__ is declared... yes ============================================================================ == System-specific tests ============================================================================ checking for _SC_NPROCESSORS_ONLN... yes checking whether byte ordering is bigendian... no checking for broken qsort... no checking if word-sized integers must be word-size aligned... no checking if C compiler and POSIX threads work as is... no checking if C++ compiler and POSIX threads work as is... no checking if Fortran compiler and POSIX threads work as is... no checking if C compiler and POSIX threads work with -Kthread... no checking if C compiler and POSIX threads work with -kthread... no checking if C compiler and POSIX threads work with -pthread... yes checking if C++ compiler and POSIX threads work with -Kthread... no checking if C++ compiler and POSIX threads work with -kthread... no checking if C++ compiler and POSIX threads work with -pthread... yes checking if Fortran compiler and POSIX threads work with -Kthread... no checking if Fortran compiler and POSIX threads work with -kthread... no checking if Fortran compiler and POSIX threads work with -pthread... yes checking for pthread_mutexattr_setpshared... yes checking for pthread_condattr_setpshared... yes checking for PTHREAD_MUTEX_ERRORCHECK_NP... yes checking for PTHREAD_MUTEX_ERRORCHECK... yes checking for working POSIX threads package... yes checking for type of thread support... posix checking if threads have different pids (pthreads on linux)... no checking if want MPI_THREAD_MULTIPLE support... Disabled checking whether ln -s works... yes checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... (cached) /bin/grep -E checking dependency style of gcc... (cached) gcc3 checking for flex... no checking for lex... no checking for flavor of ps to use... ps -A -o fname,pid,user checking if build filesystem is case sensitive... yes checking if configuring for case sensitive filesystem... yes checking whether RLIMIT_NPROC is declared... yes checking whether RLIMIT_MEMLOCK is declared... yes checking whether RLIMIT_NOFILE is declared... yes checking whether RLIMIT_FSIZE is declared... yes checking whether RLIMIT_CORE is declared... yes checking whether RLIMIT_STACK is declared... yes checking whether RLIMIT_AS is declared... yes ============================================================================ == Modular Component Architecture (MCA) setup ============================================================================ checking for subdir args... '--prefix=/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64' '--libdir=/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/lib' 'CC=gcc' 'CFLAGS=-fstack-protector -O3 -march=native -mtune=native' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -march=native -mtune=native' 'F90=gfortran' 'F90FLAGS=-ffree-line-length-0 -O3 -march=native -mtune=native' 'F77=gfortran' 'FFLAGS=-ffree-line-length-0 -O3 -march=native -mtune=native' 'FC=gfortran' 'FCFLAGS=-ffree-line-length-0 -O3 -march=native -mtune=native' '--disable-shared' '--with-rsh=ssh' 'MAKE=/usr/bin/make' '--enable-shared=no' '--enable-static=yes' '--disable-vt' '--with-hwloc=internal' checking --with-verbs value... simple ok (unspecified) checking --with-verbs-libdir value... simple ok (unspecified) checking for pkg-config... no checking for X... libraries , headers ==> Pre-emptively configuring the hwloc framework to satisfy dependencies. checking whether to enable hwloc PCI device support... yes (default) +++ Configuring MCA framework hwloc checking for no configure components in framework hwloc... checking for m4 configure components in framework hwloc... hwloc191, external --- MCA component hwloc:hwloc191 (m4 configuration macro, priority 90) checking for MCA component hwloc:hwloc191 compile mode... static checking hwloc building mode... embedded configure: hwloc builddir: /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc configure: hwloc srcdir: /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... opal/mca/hwloc/hwloc191/hwloc/ checking for hwloc symbol prefix... opal_hwloc191_ checking size of void *... (cached) 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking for dirent.h... (cached) yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strncasecmp... yes checking whether function strncasecmp is declared... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking for sys/mman.h... (cached) yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... (cached) yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking whether strtoull is declared... yes checking for pthread_t... yes checking whether function sched_setaffinity is declared... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working _syscall3... no checking for KERRIGHED... cannot check without pkg-config checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking for malloc.h... (cached) yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... (cached) yes checking for sys/utsname.h... (cached) yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking numaif.h usability... yes checking numaif.h presence... yes checking for numaif.h... yes checking for numa_available in -lnuma... yes checking for set_mempolicy in -lnuma... yes checking for mbind in -lnuma... yes checking for migrate_pages in -lnuma... yes checking for PCIACCESS... cannot check without pkg-config checking for PCIUTILS... cannot check without pkg-config checking pci/pci.h usability... no checking pci/pci.h presence... no checking for pci/pci.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking for X11/Xutil.h... yes checking X11/keysym.h usability... yes checking X11/keysym.h presence... yes checking for X11/keysym.h... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic custom xml_nolibxml linux linuxpci x86 checking components to build as plugins... checking whether hwloc configure succeeded... yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes checking if MCA component hwloc:hwloc191 can compile... yes --- MCA component hwloc:external (m4 configuration macro, priority 90) checking for MCA component hwloc:external compile mode... static checking if MCA component hwloc:external can compile... no checking for winning hwloc component header file... opal/mca/hwloc/hwloc191/hwloc191.h <== Pre-emptive hwloc framework configuration complete. <== We now return you to your regularly scheduled programming. checking which components should be disabled... checking which components should be direct-linked into the library... checking which components should be run-time loadable... none checking which components should be static... none checking for projects containing MCA frameworks... opal, orte, ompi, oshmem *** Configuring MCA for opal checking for frameworks for opal... common, backtrace, compress, crs, db, dl, event, hwloc, if, installdirs, memchecker, memcpy, memory, pstat, sec, shmem, timer +++ Configuring MCA framework common checking for no configure components in framework common... checking for m4 configure components in framework common... pmi --- MCA component common:pmi (m4 configuration macro) checking for MCA component common:pmi compile mode... static checking if user requested PMI support... no checking if MCA component common:pmi can compile... no +++ Configuring MCA framework backtrace checking for no configure components in framework backtrace... checking for m4 configure components in framework backtrace... printstack, execinfo, none --- MCA component backtrace:printstack (m4 configuration macro, priority 30) checking for MCA component backtrace:printstack compile mode... static checking ucontext.h usability... yes checking ucontext.h presence... yes checking for ucontext.h... yes checking for printstack... no checking if MCA component backtrace:printstack can compile... no --- MCA component backtrace:execinfo (m4 configuration macro, priority 30) checking for MCA component backtrace:execinfo compile mode... static checking for execinfo.h... (cached) yes checking for library containing backtrace... none required checking if MCA component backtrace:execinfo can compile... yes --- MCA component backtrace:none (m4 configuration macro, priority 0) checking for MCA component backtrace:none compile mode... static checking if MCA component backtrace:none can compile... no +++ Configuring MCA framework compress checking for no configure components in framework compress... gzip, bzip checking for m4 configure components in framework compress... --- MCA component compress:gzip (no configuration) checking for MCA component compress:gzip compile mode... static checking if MCA component compress:gzip can compile... yes --- MCA component compress:bzip (no configuration) checking for MCA component compress:bzip compile mode... static checking if MCA component compress:bzip can compile... yes +++ Configuring MCA framework crs checking for no configure components in framework crs... none checking for m4 configure components in framework crs... dmtcp, self, blcr --- MCA component crs:none (no configuration) checking for MCA component crs:none compile mode... static checking if MCA component crs:none can compile... yes --- MCA component crs:dmtcp (m4 configuration macro) checking for MCA component crs:dmtcp compile mode... static checking if MCA component crs:dmtcp can compile... no --- MCA component crs:self (m4 configuration macro) checking for MCA component crs:self compile mode... static checking if MCA component crs:self can compile... no --- MCA component crs:blcr (m4 configuration macro) checking for MCA component crs:blcr compile mode... static checking if MCA component crs:blcr can compile... no +++ Configuring MCA framework db checking for no configure components in framework db... print, hash checking for m4 configure components in framework db... pmi, sqlite --- MCA component db:print (no configuration) checking for MCA component db:print compile mode... static checking if MCA component db:print can compile... yes --- MCA component db:hash (no configuration) checking for MCA component db:hash compile mode... static checking if MCA component db:hash can compile... yes --- MCA component db:pmi (m4 configuration macro) checking for MCA component db:pmi compile mode... static checking if user requested PMI support... no checking if MCA component db:pmi can compile... no --- MCA component db:sqlite (m4 configuration macro) checking for MCA component db:sqlite compile mode... static checking if MCA component db:sqlite can compile... no +++ Configuring MCA framework dl checking for no configure components in framework dl... checking for m4 configure components in framework dl... libltdl, dlopen --- MCA component dl:dlopen (m4 configuration macro, priority 80) checking for MCA component dl:dlopen compile mode... static checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes looking for library without search path checking for library containing dlopen... -ldl checking if MCA component dl:dlopen can compile... yes --- MCA component dl:libltdl (m4 configuration macro, priority 50) checking for MCA component dl:libltdl compile mode... static checking --with-libltdl value... simple ok (unspecified) checking --with-libltdl-libdir value... simple ok (unspecified) checking for libltdl dir... compiler default checking for libltdl library dir... linker default checking ltdl.h usability... yes checking ltdl.h presence... yes checking for ltdl.h... yes looking for library without search path checking for library containing lt_dlopen... -lltdl checking for lt_dladvise_init... yes checking if MCA component dl:libltdl can compile... no +++ Configuring MCA framework event checking for no configure components in framework event... checking for m4 configure components in framework event... libevent2021, external --- MCA component event:external (m4 configuration macro, priority 90) checking for MCA component event:external compile mode... static checking if MCA component event:external can compile... no --- MCA component event:libevent2021 (m4 configuration macro, priority 80) checking for MCA component event:libevent2021 compile mode... static checking libevent configuration args... --disable-dns --disable-http --disable-rpc --disable-openssl --enable-thread-support --disable-evport configure: OMPI configuring in opal/mca/event/libevent2021/libevent configure: running /bin/bash './configure' --disable-dns --disable-http --disable-rpc --disable-openssl --enable-thread-support --disable-evport '--prefix=/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64' '--libdir=/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/lib' 'CC=gcc' 'CFLAGS=-fstack-protector -O3 -march=native -mtune=native' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -O3 -march=native -mtune=native' 'F90=gfortran' 'F90FLAGS=-ffree-line-length-0 -O3 -march=native -mtune=native' 'F77=gfortran' 'FFLAGS=-ffree-line-length-0 -O3 -march=native -mtune=native' 'FC=gfortran' 'FCFLAGS=-ffree-line-length-0 -O3 -march=native -mtune=native' '--disable-shared' '--with-rsh=ssh' 'MAKE=/usr/bin/make' '--enable-shared=no' '--enable-static=yes' '--disable-vt' '--with-hwloc=internal' --cache-file=/dev/null --srcdir=. --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for style of include used by /usr/bin/make... GNU checking dependency style of gcc... gcc3 checking whether gcc and cc understand -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking whether ln -s works... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc needs -traditional... no checking how to print strings... printf checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for library containing inet_ntoa... none required checking for library containing socket... none required checking for library containing inet_aton... none required checking for library containing clock_gettime... none required checking for library containing sendfile... none required checking for WIN32... no checking for CYGWIN... no checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for library containing inflateEnd... -lz checking openssl/bio.h usability... no checking openssl/bio.h presence... no checking for openssl/bio.h... no checking for ANSI C header files... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for unistd.h... (cached) yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/queue.h usability... yes checking sys/queue.h presence... yes checking for sys/queue.h... yes checking sys/event.h usability... no checking sys/event.h presence... no checking for sys/event.h... no checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/devpoll.h usability... no checking sys/devpoll.h presence... no checking for sys/devpoll.h... no checking port.h usability... no checking port.h presence... no checking for port.h... no checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/in6.h usability... no checking netinet/in6.h presence... no checking for netinet/in6.h... no checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking sys/eventfd.h usability... yes checking sys/eventfd.h presence... yes checking for sys/eventfd.h... yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/sendfile.h usability... yes checking sys/sendfile.h presence... yes checking for sys/sendfile.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for sys/stat.h... (cached) yes checking for sys/sysctl.h... yes checking for TAILQ_FOREACH in sys/queue.h... yes checking for timeradd in sys/time.h... yes checking for timercmp in sys/time.h... yes checking for timerclear in sys/time.h... yes checking for timerisset in sys/time.h... yes checking whether CTL_KERN is declared... yes checking whether KERN_RANDOM is declared... yes checking whether RANDOM_UUID is declared... yes checking whether KERN_ARND is declared... no checking for an ANSI C-conforming const... yes checking for inline... inline checking whether time.h and sys/time.h may both be included... yes checking for gettimeofday... yes checking for vasprintf... yes checking for fcntl... yes checking for clock_gettime... yes checking for strtok_r... yes checking for strsep... yes checking for getnameinfo... yes checking for strlcpy... no checking for inet_ntop... yes checking for inet_pton... yes checking for signal... yes checking for sigaction... yes checking for strtoll... yes checking for inet_aton... yes checking for pipe... yes checking for eventfd... yes checking for sendfile... yes checking for mmap... yes checking for splice... yes checking for arc4random... no checking for arc4random_buf... no checking for issetugid... no checking for geteuid... yes checking for getegid... yes checking for getprotobynumber... yes checking for setenv... yes checking for unsetenv... yes checking for putenv... yes checking for sysctl... yes checking for umask... yes checking for getaddrinfo... yes checking size of long... 8 checking for F_SETFD in fcntl.h... yes checking for select... yes checking for select support... yes checking for poll... yes checking for poll support... yes checking for /dev/poll support... no checking for epoll support... enabled checking for epoll_ctl... yes checking for working epoll library interface... checking if epoll can build... yes yes checking for epoll syscall support... no checking for evport support... no checking event_ops... yes checking for working ops... yes checking for pid_t... yes checking for size_t... yes checking for ssize_t... yes checking for uint64_t... yes checking for uint32_t... yes checking for uint16_t... yes checking for uint8_t... yes checking for uintptr_t... yes checking for fd_mask... yes checking size of long long... 8 checking size of long... (cached) 8 checking size of int... 4 checking size of short... 2 checking size of size_t... 8 checking size of void *... 8 checking for struct in6_addr... yes checking for struct sockaddr_in6... yes checking for sa_family_t... yes checking for struct addrinfo... yes checking for struct sockaddr_storage... yes checking for struct in6_addr.s6_addr32... yes checking for struct in6_addr.s6_addr16... yes checking for struct sockaddr_in.sin_len... no checking for struct sockaddr_in6.sin6_len... no checking for struct sockaddr_storage.ss_family... yes checking for struct sockaddr_storage.__ss_family... no checking for socklen_t... yes checking whether our compiler supports __func__... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking size of pthread_t... 8 checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating libevent.pc config.status: creating libevent_openssl.pc config.status: creating libevent_pthreads.pc config.status: creating Makefile config.status: creating include/Makefile config.status: creating config.h config.status: config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands configure: /bin/bash './configure' succeeded for opal/mca/event/libevent2021/libevent checking if MCA component event:libevent2021 can compile... yes checking if have working event ops for the event framework... yes checking for winning event component header file... libevent2021/libevent2021.h +++ Configuring MCA framework if checking for no configure components in framework if... checking for m4 configure components in framework if... solaris_ipv6, bsdx_ipv4, bsdx_ipv6, posix_ipv4, linux_ipv6 --- MCA component if:solaris_ipv6 (m4 configuration macro) checking for MCA component if:solaris_ipv6 compile mode... static checking if MCA component if:solaris_ipv6 can compile... no --- MCA component if:bsdx_ipv4 (m4 configuration macro) checking for MCA component if:bsdx_ipv4 compile mode... static checking struct sockaddr... yes (cached) checking NetBSD, FreeBSD, OpenBSD, or DragonFly... no checking if MCA component if:bsdx_ipv4 can compile... no --- MCA component if:bsdx_ipv6 (m4 configuration macro) checking for MCA component if:bsdx_ipv6 compile mode... static checking struct sockaddr... yes (cached) checking some flavor of BSD... no checking if MCA component if:bsdx_ipv6 can compile... no --- MCA component if:posix_ipv4 (m4 configuration macro) checking for MCA component if:posix_ipv4 compile mode... static checking struct sockaddr... yes (cached) checking not NetBSD, FreeBSD, OpenBSD, or DragonFly... yes checking for struct ifreq.ifr_hwaddr... yes checking for struct ifreq.ifr_mtu... yes checking if MCA component if:posix_ipv4 can compile... yes --- MCA component if:linux_ipv6 (m4 configuration macro) checking for MCA component if:linux_ipv6 compile mode... static checking if we are on Linux with TCP... yes checking if MCA component if:linux_ipv6 can compile... yes +++ Configuring MCA framework installdirs checking for no configure components in framework installdirs... checking for m4 configure components in framework installdirs... config, env --- MCA component installdirs:env (m4 configuration macro, priority 10) checking for MCA component installdirs:env compile mode... static checking if MCA component installdirs:env can compile... yes --- MCA component installdirs:config (m4 configuration macro, priority 0) checking for MCA component installdirs:config compile mode... static checking if MCA component installdirs:config can compile... yes +++ Pre-configuring the framework memchecker checking if --enable-memchecker was specified... no (adding "memchecker" to --enable-mca-no-build list) +++ Configuring MCA framework memchecker checking for no configure components in framework memchecker... checking for m4 configure components in framework memchecker... valgrind --- MCA component memchecker:valgrind (m4 configuration macro, priority 10) checking for MCA component memchecker:valgrind compile mode... static checking --with-valgrind value... simple ok (unspecified) checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking if MCA component memchecker:valgrind can compile... no +++ Configuring MCA framework memcpy checking for no configure components in framework memcpy... checking for m4 configure components in framework memcpy... +++ Configuring MCA framework memory checking for no configure components in framework memory... checking for m4 configure components in framework memory... linux, malloc_solaris --- MCA component memory:linux (m4 configuration macro, priority 40) checking for MCA component memory:linux compile mode... static checking operating system... x86_64-unknown-linux-gnu -- supported checking for malloc.h... (cached) yes checking whether __malloc_initialize_hook is declared... no checking linux/ummunotify.h usability... no checking linux/ummunotify.h presence... no checking for linux/ummunotify.h... no checking for stropts.h... (cached) yes checking if MCA component memory:linux can compile... no --- MCA component memory:malloc_solaris (m4 configuration macro, priority 0) checking for MCA component memory:malloc_solaris compile mode... static checking for Solaris... no checking if MCA component memory:malloc_solaris can compile... no +++ Configuring MCA framework pstat checking for no configure components in framework pstat... checking for m4 configure components in framework pstat... test, linux --- MCA component pstat:linux (m4 configuration macro, priority 60) checking for MCA component pstat:linux compile mode... static checking whether HZ is declared... yes checking if MCA component pstat:linux can compile... yes --- MCA component pstat:test (m4 configuration macro, priority 10) checking for MCA component pstat:test compile mode... static checking if MCA component pstat:test can compile... no +++ Configuring MCA framework sec checking for no configure components in framework sec... basic checking for m4 configure components in framework sec... keystone --- MCA component sec:basic (no configuration) checking for MCA component sec:basic compile mode... static checking if MCA component sec:basic can compile... yes --- MCA component sec:keystone (m4 configuration macro) checking for MCA component sec:keystone compile mode... static checking want keystone security... no checking if MCA component sec:keystone can compile... no +++ Configuring MCA framework shmem checking for no configure components in framework shmem... checking for m4 configure components in framework shmem... mmap, posix, sysv --- MCA component shmem:mmap (m4 configuration macro) checking for MCA component shmem:mmap compile mode... static checking if want mmap shared memory support... yes checking for library containing mmap... none required checking if MCA component shmem:mmap can compile... yes --- MCA component shmem:posix (m4 configuration macro) checking for MCA component shmem:posix compile mode... static checking if want POSIX shared memory support... yes checking for library containing shm_open... -lrt checking if MCA component shmem:posix can compile... yes --- MCA component shmem:sysv (m4 configuration macro) checking for MCA component shmem:sysv compile mode... static checking if want SYSV shared memory support... yes checking for shmget... yes checking if MCA component shmem:sysv can compile... yes +++ Configuring MCA framework timer checking for no configure components in framework timer... checking for m4 configure components in framework timer... solaris, altix, catamount, linux, aix, darwin --- MCA component timer:altix (m4 configuration macro, priority 100) checking for MCA component timer:altix compile mode... static checking sn/mmtimer.h usability... no checking sn/mmtimer.h presence... no checking for sn/mmtimer.h... no checking if MCA component timer:altix can compile... no --- MCA component timer:catamount (m4 configuration macro, priority 100) checking for MCA component timer:catamount compile mode... static checking catamount/dclock.h usability... no checking catamount/dclock.h presence... no checking for catamount/dclock.h... no checking if MCA component timer:catamount can compile... no --- MCA component timer:solaris (m4 configuration macro, priority 30) checking for MCA component timer:solaris compile mode... static checking for gethrtime... no checking if MCA component timer:solaris can compile... no --- MCA component timer:linux (m4 configuration macro, priority 30) checking for MCA component timer:linux compile mode... static checking if MCA component timer:linux can compile... yes --- MCA component timer:aix (m4 configuration macro, priority 30) checking for MCA component timer:aix compile mode... static checking for time_base_to_time... no checking if MCA component timer:aix can compile... no --- MCA component timer:darwin (m4 configuration macro, priority 30) checking for MCA component timer:darwin compile mode... static checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking for mach_absolute_time... no checking if MCA component timer:darwin can compile... no *** Configuring MCA for orte checking for frameworks for orte... dfs, errmgr, ess, filem, grpcomm, iof, odls, oob, plm, ras, rmaps, rml, routed, sensor, snapc, sstore, state +++ Configuring MCA framework dfs checking for no configure components in framework dfs... test, app, orted checking for m4 configure components in framework dfs... --- MCA component dfs:test (no configuration) checking for MCA component dfs:test compile mode... static checking if MCA component dfs:test can compile... yes --- MCA component dfs:app (no configuration) checking for MCA component dfs:app compile mode... static checking if MCA component dfs:app can compile... yes --- MCA component dfs:orted (no configuration) checking for MCA component dfs:orted compile mode... static checking if MCA component dfs:orted can compile... yes +++ Configuring MCA framework errmgr checking for no configure components in framework errmgr... default_tool, default_hnp, default_orted, default_app checking for m4 configure components in framework errmgr... --- MCA component errmgr:default_tool (no configuration) checking for MCA component errmgr:default_tool compile mode... static checking if MCA component errmgr:default_tool can compile... yes --- MCA component errmgr:default_hnp (no configuration) checking for MCA component errmgr:default_hnp compile mode... static checking if MCA component errmgr:default_hnp can compile... yes --- MCA component errmgr:default_orted (no configuration) checking for MCA component errmgr:default_orted compile mode... static checking if MCA component errmgr:default_orted can compile... yes --- MCA component errmgr:default_app (no configuration) checking for MCA component errmgr:default_app compile mode... static checking if MCA component errmgr:default_app can compile... yes +++ Configuring MCA framework ess checking for no configure components in framework ess... tool, hnp, singleton, env checking for m4 configure components in framework ess... pmi, slurm, alps, lsf, tm --- MCA component ess:tool (no configuration) checking for MCA component ess:tool compile mode... static checking if MCA component ess:tool can compile... yes --- MCA component ess:hnp (no configuration) checking for MCA component ess:hnp compile mode... static checking if MCA component ess:hnp can compile... yes --- MCA component ess:singleton (no configuration) checking for MCA component ess:singleton compile mode... static checking if MCA component ess:singleton can compile... yes --- MCA component ess:env (no configuration) checking for MCA component ess:env compile mode... static checking if MCA component ess:env can compile... yes --- MCA component ess:pmi (m4 configuration macro) checking for MCA component ess:pmi compile mode... static checking if user requested PMI support... no checking if MCA component ess:pmi can compile... no --- MCA component ess:slurm (m4 configuration macro) checking for MCA component ess:slurm compile mode... static checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... (cached) yes checking if MCA component ess:slurm can compile... yes --- MCA component ess:alps (m4 configuration macro) checking for MCA component ess:alps compile mode... static checking for catamount/cnos_mpi_os.h... no checking for cnos_mpi_os.h... no checking --with-alps value... simple ok (unspecified) checking --with-ugni value... simple ok (unspecified) checking --with-ugni-libdir value... simple ok (unspecified) checking --with-ugni-includedir value... simple ok (unspecified) checking ugni.h usability... no checking ugni.h presence... no checking for ugni.h... no checking if MCA component ess:alps can compile... no --- MCA component ess:lsf (m4 configuration macro) checking for MCA component ess:lsf compile mode... static checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for library containing yp_all... -lnsl checking lsf/lsf.h usability... no checking lsf/lsf.h presence... no checking for lsf/lsf.h... no checking if MCA component ess:lsf can compile... no --- MCA component ess:tm (m4 configuration macro) checking for MCA component ess:tm compile mode... static checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ess:tm can compile... no +++ Configuring MCA framework filem checking for no configure components in framework filem... raw checking for m4 configure components in framework filem... --- MCA component filem:raw (no configuration) checking for MCA component filem:raw compile mode... static checking if MCA component filem:raw can compile... yes +++ Configuring MCA framework grpcomm checking for no configure components in framework grpcomm... bad checking for m4 configure components in framework grpcomm... pmi --- MCA component grpcomm:bad (no configuration) checking for MCA component grpcomm:bad compile mode... static checking if MCA component grpcomm:bad can compile... yes --- MCA component grpcomm:pmi (m4 configuration macro) checking for MCA component grpcomm:pmi compile mode... static checking if user requested PMI support... no checking if MCA component grpcomm:pmi can compile... no +++ Configuring MCA framework iof checking for no configure components in framework iof... mr_orted, tool, hnp, orted, mr_hnp checking for m4 configure components in framework iof... --- MCA component iof:mr_orted (no configuration) checking for MCA component iof:mr_orted compile mode... static checking if MCA component iof:mr_orted can compile... yes --- MCA component iof:tool (no configuration) checking for MCA component iof:tool compile mode... static checking if MCA component iof:tool can compile... yes --- MCA component iof:hnp (no configuration) checking for MCA component iof:hnp compile mode... static checking if MCA component iof:hnp can compile... yes --- MCA component iof:orted (no configuration) checking for MCA component iof:orted compile mode... static checking if MCA component iof:orted can compile... yes --- MCA component iof:mr_hnp (no configuration) checking for MCA component iof:mr_hnp compile mode... static checking if MCA component iof:mr_hnp can compile... yes +++ Configuring MCA framework odls checking for no configure components in framework odls... checking for m4 configure components in framework odls... default --- MCA component odls:default (m4 configuration macro) checking for MCA component odls:default compile mode... static checking for fork... (cached) yes checking if MCA component odls:default can compile... yes +++ Configuring MCA framework oob checking for no configure components in framework oob... checking for m4 configure components in framework oob... tcp --- MCA component oob:tcp (m4 configuration macro) checking for MCA component oob:tcp compile mode... static checking for struct sockaddr_in... (cached) yes checking if MCA component oob:tcp can compile... yes +++ Configuring MCA framework plm checking for no configure components in framework plm... checking for m4 configure components in framework plm... isolated, slurm, alps, rsh, lsf, tm --- MCA component plm:isolated (m4 configuration macro) checking for MCA component plm:isolated compile mode... static checking for fork... (cached) yes checking if MCA component plm:isolated can compile... yes --- MCA component plm:slurm (m4 configuration macro) checking for MCA component plm:slurm compile mode... static checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... (cached) yes checking if MCA component plm:slurm can compile... yes --- MCA component plm:alps (m4 configuration macro) checking for MCA component plm:alps compile mode... static checking if MCA component plm:alps can compile... no --- MCA component plm:rsh (m4 configuration macro) checking for MCA component plm:rsh compile mode... static checking for fork... (cached) yes checking if MCA component plm:rsh can compile... yes --- MCA component plm:lsf (m4 configuration macro) checking for MCA component plm:lsf compile mode... static checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for library containing yp_all... (cached) -lnsl checking lsf/lsf.h usability... no checking lsf/lsf.h presence... no checking for lsf/lsf.h... no checking if MCA component plm:lsf can compile... no --- MCA component plm:tm (m4 configuration macro) checking for MCA component plm:tm compile mode... static checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component plm:tm can compile... no +++ Configuring MCA framework ras checking for no configure components in framework ras... simulator checking for m4 configure components in framework ras... loadleveler, slurm, alps, gridengine, lsf, tm --- MCA component ras:simulator (no configuration) checking for MCA component ras:simulator compile mode... static checking if MCA component ras:simulator can compile... yes --- MCA component ras:loadleveler (m4 configuration macro) checking for MCA component ras:loadleveler compile mode... static checking if MCA component ras:loadleveler can compile... yes --- MCA component ras:slurm (m4 configuration macro) checking for MCA component ras:slurm compile mode... static checking for fork... (cached) yes checking for execve... (cached) yes checking for setpgid... (cached) yes checking if MCA component ras:slurm can compile... yes --- MCA component ras:alps (m4 configuration macro) checking for MCA component ras:alps compile mode... static checking alps/apInfo.h usability... no checking alps/apInfo.h presence... no checking for alps/apInfo.h... no checking if MCA component ras:alps can compile... no --- MCA component ras:gridengine (m4 configuration macro) checking for MCA component ras:gridengine compile mode... static checking if user requested SGE build... not specified; checking environment checking for qrsh... no checking for SGE_ROOT environment variable... not found checking if MCA component ras:gridengine can compile... no --- MCA component ras:lsf (m4 configuration macro) checking for MCA component ras:lsf compile mode... static checking --with-lsf value... simple ok (unspecified) checking --with-lsf-libdir value... simple ok (unspecified) checking for library containing yp_all... (cached) -lnsl checking lsf/lsf.h usability... no checking lsf/lsf.h presence... no checking for lsf/lsf.h... no checking if MCA component ras:lsf can compile... no --- MCA component ras:tm (m4 configuration macro) checking for MCA component ras:tm compile mode... static checking --with-tm value... simple ok (unspecified) checking for pbs-config... not found checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking if MCA component ras:tm can compile... no +++ Configuring MCA framework rmaps checking for no configure components in framework rmaps... resilient, seq, round_robin, ppr, staged checking for m4 configure components in framework rmaps... mindist, lama, rank_file --- MCA component rmaps:resilient (no configuration) checking for MCA component rmaps:resilient compile mode... static checking if MCA component rmaps:resilient can compile... yes --- MCA component rmaps:seq (no configuration) checking for MCA component rmaps:seq compile mode... static checking if MCA component rmaps:seq can compile... yes --- MCA component rmaps:round_robin (no configuration) checking for MCA component rmaps:round_robin compile mode... static checking if MCA component rmaps:round_robin can compile... yes --- MCA component rmaps:ppr (no configuration) checking for MCA component rmaps:ppr compile mode... static checking if MCA component rmaps:ppr can compile... yes --- MCA component rmaps:staged (no configuration) checking for MCA component rmaps:staged compile mode... static checking if MCA component rmaps:staged can compile... yes --- MCA component rmaps:mindist (m4 configuration macro) checking for MCA component rmaps:mindist compile mode... static checking if MCA component rmaps:mindist can compile... yes --- MCA component rmaps:lama (m4 configuration macro) checking for MCA component rmaps:lama compile mode... static checking if MCA component rmaps:lama can compile... yes --- MCA component rmaps:rank_file (m4 configuration macro) checking for MCA component rmaps:rank_file compile mode... static checking if MCA component rmaps:rank_file can compile... yes +++ Configuring MCA framework rml checking for no configure components in framework rml... oob checking for m4 configure components in framework rml... ftrm --- MCA component rml:oob (no configuration) checking for MCA component rml:oob compile mode... static checking if MCA component rml:oob can compile... yes --- MCA component rml:ftrm (m4 configuration macro) checking for MCA component rml:ftrm compile mode... static checking if MCA component rml:ftrm can compile... no +++ Configuring MCA framework routed checking for no configure components in framework routed... direct, radix, debruijn, binomial checking for m4 configure components in framework routed... --- MCA component routed:direct (no configuration) checking for MCA component routed:direct compile mode... static checking if MCA component routed:direct can compile... yes --- MCA component routed:radix (no configuration) checking for MCA component routed:radix compile mode... static checking if MCA component routed:radix can compile... yes --- MCA component routed:debruijn (no configuration) checking for MCA component routed:debruijn compile mode... static checking if MCA component routed:debruijn can compile... yes --- MCA component routed:binomial (no configuration) checking for MCA component routed:binomial compile mode... static checking if MCA component routed:binomial can compile... yes +++ Configuring MCA framework sensor checking for no configure components in framework sensor... checking for m4 configure components in framework sensor... resusage, file, heartbeat, ft_tester --- MCA component sensor:resusage (m4 configuration macro) checking for MCA component sensor:resusage compile mode... static checking if MCA component sensor:resusage can compile... no --- MCA component sensor:file (m4 configuration macro) checking for MCA component sensor:file compile mode... static checking if MCA component sensor:file can compile... no --- MCA component sensor:heartbeat (m4 configuration macro) checking for MCA component sensor:heartbeat compile mode... static checking if MCA component sensor:heartbeat can compile... no --- MCA component sensor:ft_tester (m4 configuration macro) checking for MCA component sensor:ft_tester compile mode... static checking if MCA component sensor:ft_tester can compile... no +++ Configuring MCA framework snapc checking for no configure components in framework snapc... checking for m4 configure components in framework snapc... full --- MCA component snapc:full (m4 configuration macro) checking for MCA component snapc:full compile mode... static checking if MCA component snapc:full can compile... no +++ Configuring MCA framework sstore checking for no configure components in framework sstore... checking for m4 configure components in framework sstore... stage, central --- MCA component sstore:stage (m4 configuration macro) checking for MCA component sstore:stage compile mode... static checking if MCA component sstore:stage can compile... no --- MCA component sstore:central (m4 configuration macro) checking for MCA component sstore:central compile mode... static checking if MCA component sstore:central can compile... no +++ Configuring MCA framework state checking for no configure components in framework state... app, staged_orted, staged_hnp, tool, hnp, orted, novm checking for m4 configure components in framework state... --- MCA component state:app (no configuration) checking for MCA component state:app compile mode... static checking if MCA component state:app can compile... yes --- MCA component state:staged_orted (no configuration) checking for MCA component state:staged_orted compile mode... static checking if MCA component state:staged_orted can compile... yes --- MCA component state:staged_hnp (no configuration) checking for MCA component state:staged_hnp compile mode... static checking if MCA component state:staged_hnp can compile... yes --- MCA component state:tool (no configuration) checking for MCA component state:tool compile mode... static checking if MCA component state:tool can compile... yes --- MCA component state:hnp (no configuration) checking for MCA component state:hnp compile mode... static checking if MCA component state:hnp can compile... yes --- MCA component state:orted (no configuration) checking for MCA component state:orted compile mode... static checking if MCA component state:orted can compile... yes --- MCA component state:novm (no configuration) checking for MCA component state:novm compile mode... static checking if MCA component state:novm can compile... yes *** Configuring MCA for ompi checking for frameworks for ompi... common, allocator, bcol, bml, btl, coll, crcp, dpm, fbtl, fcoll, fs, io, mpool, mtl, op, osc, pml, pubsub, rcache, rte, sbgp, sharedfp, topo, vprotocol +++ Configuring MCA framework common checking for no configure components in framework common... checking for m4 configure components in framework common... ugni, sm, mx, verbs, cuda --- MCA component common:ugni (m4 configuration macro) checking for MCA component common:ugni compile mode... static checking if MCA component common:ugni can compile... no --- MCA component common:sm (m4 configuration macro) checking for MCA component common:sm compile mode... static checking if MCA component common:sm can compile... yes --- MCA component common:mx (m4 configuration macro) checking for MCA component common:mx compile mode... static checking --with-mx value... simple ok (unspecified) checking --with-mx-libdir value... simple ok (unspecified) checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component common:mx can compile... no --- MCA component common:verbs (m4 configuration macro) checking for MCA component common:verbs compile mode... static checking if want to add padding to the openib BTL control header... no checking for fcntl.h... (cached) yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes looking for library without search path checking for library containing ibv_open_device... -libverbs checking number of arguments to ibv_create_cq... 5 checking whether IBV_EVENT_CLIENT_REREGISTER is declared... yes checking whether IBV_ACCESS_SO is declared... no checking whether IBV_TRANSPORT_USNIC is declared... yes checking whether IBV_TRANSPORT_USNIC_UDP is declared... yes checking whether IBV_NODE_USNIC is declared... yes checking for ibv_get_device_list... yes checking for ibv_resize_cq... yes checking for struct ibv_device.transport_type... yes checking for ibv_create_xrc_rcv_qp... no checking for ibv_cmd_open_xrcd... yes checking whether IBV_SRQT_XRC is declared... no checking infiniband/complib/cl_types_osd.h usability... no checking infiniband/complib/cl_types_osd.h presence... no checking for infiniband/complib/cl_types_osd.h... no checking if can use dynamic SL support... no checking whether IBV_LINK_LAYER_ETHERNET is declared... yes checking if RDMAoE support is enabled... yes checking for infiniband/driver.h... yes checking if ConnectX XRC support is enabled... no checking if ConnectIB XRC support is enabled... no checking if dynamic SL is enabled... no checking if MCA component common:verbs can compile... yes --- MCA component common:cuda (m4 configuration macro) checking for MCA component common:cuda compile mode... static checking if MCA component common:cuda can compile... no +++ Configuring MCA framework allocator checking for no configure components in framework allocator... bucket, basic checking for m4 configure components in framework allocator... --- MCA component allocator:bucket (no configuration) checking for MCA component allocator:bucket compile mode... static checking if MCA component allocator:bucket can compile... yes --- MCA component allocator:basic (no configuration) checking for MCA component allocator:basic compile mode... static checking if MCA component allocator:basic can compile... yes +++ Configuring MCA framework bcol checking for no configure components in framework bcol... ptpcoll, basesmuma checking for m4 configure components in framework bcol... --- MCA component bcol:ptpcoll (no configuration) checking for MCA component bcol:ptpcoll compile mode... static checking if MCA component bcol:ptpcoll can compile... yes --- MCA component bcol:basesmuma (no configuration) checking for MCA component bcol:basesmuma compile mode... static checking if MCA component bcol:basesmuma can compile... yes +++ Configuring MCA framework bml checking for no configure components in framework bml... checking for m4 configure components in framework bml... r2 --- MCA component bml:r2 (m4 configuration macro) checking for MCA component bml:r2 compile mode... static checking if MCA component bml:r2 can compile... yes checking for index in endpoint array for tag BML... 0 +++ Configuring MCA framework btl checking for no configure components in framework btl... self checking for m4 configure components in framework btl... smcuda, ugni, sm, scif, portals4, tcp, openib, vader, usnic --- MCA component btl:self (no configuration) checking for MCA component btl:self compile mode... static checking if MCA component btl:self can compile... yes --- MCA component btl:smcuda (m4 configuration macro) checking for MCA component btl:smcuda compile mode... static checking if MCA component btl:smcuda can compile... no --- MCA component btl:ugni (m4 configuration macro) checking for MCA component btl:ugni compile mode... static checking if MCA component btl:ugni can compile... no --- MCA component btl:sm (m4 configuration macro) checking for MCA component btl:sm compile mode... static checking if user requested CMA build... no checking --with-knem value... simple ok (unspecified) checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no checking if MCA component btl:sm can compile... yes --- MCA component btl:scif (m4 configuration macro) checking for MCA component btl:scif compile mode... static checking --with-scif value... simple ok (unspecified) checking scif.h usability... no checking scif.h presence... no checking for scif.h... no checking if MCA component btl:scif can compile... no --- MCA component btl:portals4 (m4 configuration macro) checking for MCA component btl:portals4 compile mode... static checking --with-portals4 value... simple ok (unspecified) checking --with-portals4-libdir value... simple ok (unspecified) checking portals4.h usability... no checking portals4.h presence... no checking for portals4.h... no checking whether to enable flow control... no checking if MCA component btl:portals4 can compile... no --- MCA component btl:tcp (m4 configuration macro) checking for MCA component btl:tcp compile mode... static checking for struct sockaddr_in... (cached) yes checking if MCA component btl:tcp can compile... yes --- MCA component btl:openib (m4 configuration macro) checking for MCA component btl:openib compile mode... static checking if want to add padding to the openib BTL control header... no checking for fcntl.h... (cached) yes checking for sys/poll.h... (cached) yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes looking for library without search path checking for library containing ibv_open_device... -libverbs checking number of arguments to ibv_create_cq... (cached) 5 checking whether IBV_EVENT_CLIENT_REREGISTER is declared... (cached) yes checking whether IBV_ACCESS_SO is declared... (cached) no checking whether IBV_TRANSPORT_USNIC is declared... (cached) yes checking whether IBV_TRANSPORT_USNIC_UDP is declared... (cached) yes checking whether IBV_NODE_USNIC is declared... (cached) yes checking for ibv_get_device_list... (cached) yes checking for ibv_resize_cq... (cached) yes checking for struct ibv_device.transport_type... (cached) yes checking for ibv_create_xrc_rcv_qp... (cached) no checking for ibv_cmd_open_xrcd... (cached) yes checking whether IBV_SRQT_XRC is declared... (cached) no checking for infiniband/complib/cl_types_osd.h... (cached) no checking if can use dynamic SL support... no checking whether IBV_LINK_LAYER_ETHERNET is declared... (cached) yes checking if RDMAoE support is enabled... yes checking for infiniband/driver.h... (cached) yes checking if ConnectX XRC support is enabled... no checking if ConnectIB XRC support is enabled... no checking if dynamic SL is enabled... no checking rdma/rdma_cma.h usability... no checking rdma/rdma_cma.h presence... no checking for rdma/rdma_cma.h... no checking if UD CM is enabled... yes checking if OpenFabrics RDMACM support is enabled... no checking for ibv_fork_init... yes checking for thread support (needed for rdmacm/udcm)... posix checking which openib btl cpcs will be built... oob udcm checking whether openib failover is enabled... no checking for malloc.h... (cached) yes checking for __malloc_hook... yes checking for __realloc_hook... yes checking for __free_hook... yes checking whether the openib BTL will use malloc hooks... yes checking if MCA component btl:openib can compile... yes --- MCA component btl:vader (m4 configuration macro) checking for MCA component btl:vader compile mode... static checking --with-xpmem value... simple ok (unspecified) checking --with-xpmem-libdir value... simple ok (unspecified) checking xpmem.h usability... no checking xpmem.h presence... no checking for xpmem.h... no checking --with-knem value... simple ok (unspecified) checking knem_io.h usability... no checking knem_io.h presence... no checking for knem_io.h... no checking if user requested CMA build... no checking if MCA component btl:vader can compile... yes --- MCA component btl:usnic (m4 configuration macro) checking for MCA component btl:usnic compile mode... static checking for net/if.h... (cached) yes checking if want to add padding to the openib BTL control header... no checking for fcntl.h... (cached) yes checking for sys/poll.h... (cached) yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes looking for library without search path checking for library containing ibv_open_device... -libverbs checking number of arguments to ibv_create_cq... (cached) 5 checking whether IBV_EVENT_CLIENT_REREGISTER is declared... (cached) yes checking whether IBV_ACCESS_SO is declared... (cached) no checking whether IBV_TRANSPORT_USNIC is declared... (cached) yes checking whether IBV_TRANSPORT_USNIC_UDP is declared... (cached) yes checking whether IBV_NODE_USNIC is declared... (cached) yes checking for ibv_get_device_list... (cached) yes checking for ibv_resize_cq... (cached) yes checking for struct ibv_device.transport_type... (cached) yes checking for ibv_create_xrc_rcv_qp... (cached) no checking for ibv_cmd_open_xrcd... (cached) yes checking whether IBV_SRQT_XRC is declared... (cached) no checking for infiniband/complib/cl_types_osd.h... (cached) no checking if can use dynamic SL support... no checking whether IBV_LINK_LAYER_ETHERNET is declared... (cached) yes checking if RDMAoE support is enabled... yes checking for infiniband/driver.h... (cached) yes checking if ConnectX XRC support is enabled... no checking if ConnectIB XRC support is enabled... no checking if dynamic SL is enabled... no checking size of void *... (cached) 8 checking for 64 bit Linux... yes checking whether IBV_EVENT_GID_CHANGE is declared... yes checking whether ibv_event_type_str is declared... yes checking --with-libnl3 value... simple ok (unspecified) checking --with-libnl3-libdir value... simple ok (unspecified) checking netlink/netlink.h usability... no checking netlink/netlink.h presence... no checking for netlink/netlink.h... no checking netlink/netlink.h usability... no checking netlink/netlink.h presence... no checking for netlink/netlink.h... no configure: could not find a libnl or libnl-3, disabling the usnic BTL checking if MCA component btl:usnic can compile... no +++ Configuring MCA framework coll checking for no configure components in framework coll... tuned, libnbc, self, sm, basic, inter checking for m4 configure components in framework coll... hierarch, hcoll, ml, fca, portals4, cuda --- MCA component coll:tuned (no configuration) checking for MCA component coll:tuned compile mode... static checking if MCA component coll:tuned can compile... yes --- MCA component coll:libnbc (no configuration) checking for MCA component coll:libnbc compile mode... static checking if MCA component coll:libnbc can compile... yes --- MCA component coll:self (no configuration) checking for MCA component coll:self compile mode... static checking if MCA component coll:self can compile... yes --- MCA component coll:sm (no configuration) checking for MCA component coll:sm compile mode... static checking if MCA component coll:sm can compile... yes --- MCA component coll:basic (no configuration) checking for MCA component coll:basic compile mode... static checking if MCA component coll:basic can compile... yes --- MCA component coll:inter (no configuration) checking for MCA component coll:inter compile mode... static checking if MCA component coll:inter can compile... yes --- MCA component coll:hierarch (m4 configuration macro) checking for MCA component coll:hierarch compile mode... static checking if MCA component coll:hierarch can compile... yes checking for index in endpoint array for tag BML... 0 --- MCA component coll:hcoll (m4 configuration macro) checking for MCA component coll:hcoll compile mode... static checking --with-hcoll value... simple ok (unspecified) checking if MCA component coll:hcoll can compile... no --- MCA component coll:ml (m4 configuration macro) checking for MCA component coll:ml compile mode... static checking if MCA component coll:ml can compile... yes --- MCA component coll:fca (m4 configuration macro) checking for MCA component coll:fca compile mode... static checking --with-fca value... simple ok (unspecified) checking if MCA component coll:fca can compile... no --- MCA component coll:portals4 (m4 configuration macro) checking for MCA component coll:portals4 compile mode... static checking --with-portals4 value... simple ok (unspecified) checking --with-portals4-libdir value... simple ok (unspecified) checking portals4.h usability... no checking portals4.h presence... no checking for portals4.h... no checking if MCA component coll:portals4 can compile... no --- MCA component coll:cuda (m4 configuration macro) checking for MCA component coll:cuda compile mode... static checking if MCA component coll:cuda can compile... no +++ Configuring MCA framework crcp checking for no configure components in framework crcp... checking for m4 configure components in framework crcp... bkmrk --- MCA component crcp:bkmrk (m4 configuration macro) checking for MCA component crcp:bkmrk compile mode... static checking if MCA component crcp:bkmrk can compile... no +++ Configuring MCA framework dpm checking for no configure components in framework dpm... checking for m4 configure components in framework dpm... orte --- MCA component dpm:orte (m4 configuration macro) checking for MCA component dpm:orte compile mode... static checking if MCA component dpm:orte can compile... yes +++ Configuring MCA framework fbtl checking for no configure components in framework fbtl... checking for m4 configure components in framework fbtl... pvfs2, posix --- MCA component fbtl:pvfs2 (m4 configuration macro) checking for MCA component fbtl:pvfs2 compile mode... static checking --with-pvfs2 value... simple ok (unspecified) checking pvfs2.h usability... no checking pvfs2.h presence... no checking for pvfs2.h... no PVFS2 support not found checking if MCA component fbtl:pvfs2 can compile... no --- MCA component fbtl:posix (m4 configuration macro) checking for MCA component fbtl:posix compile mode... static checking for aio.h... (cached) yes checking for library containing aio_write... none required checking if MCA component fbtl:posix can compile... yes +++ Configuring MCA framework fcoll checking for no configure components in framework fcoll... individual, dynamic, ylib, static, two_phase checking for m4 configure components in framework fcoll... --- MCA component fcoll:individual (no configuration) checking for MCA component fcoll:individual compile mode... static checking if MCA component fcoll:individual can compile... yes --- MCA component fcoll:dynamic (no configuration) checking for MCA component fcoll:dynamic compile mode... static checking if MCA component fcoll:dynamic can compile... yes --- MCA component fcoll:ylib (no configuration) checking for MCA component fcoll:ylib compile mode... static checking if MCA component fcoll:ylib can compile... yes --- MCA component fcoll:static (no configuration) checking for MCA component fcoll:static compile mode... static checking if MCA component fcoll:static can compile... yes --- MCA component fcoll:two_phase (no configuration) checking for MCA component fcoll:two_phase compile mode... static checking if MCA component fcoll:two_phase can compile... yes +++ Configuring MCA framework fs checking for no configure components in framework fs... ufs checking for m4 configure components in framework fs... pvfs2 --- MCA component fs:ufs (no configuration) checking for MCA component fs:ufs compile mode... static checking if MCA component fs:ufs can compile... yes --- MCA component fs:pvfs2 (m4 configuration macro) checking for MCA component fs:pvfs2 compile mode... static checking --with-pvfs2 value... simple ok (unspecified) checking for pvfs2.h... (cached) no PVFS2 support not found checking if MCA component fs:pvfs2 can compile... no +++ Configuring MCA framework io checking for no configure components in framework io... ompio checking for m4 configure components in framework io... romio --- MCA component io:ompio (no configuration) checking for MCA component io:ompio compile mode... static checking if MCA component io:ompio can compile... yes --- MCA component io:romio (m4 configuration macro) checking for MCA component io:romio compile mode... static checking if want ROMIO component... yes checking if MPI profiling is enabled... yes *** Configuring ROMIO distribution configure: OMPI configuring in ompi/mca/io/romio/romio configure: running /bin/bash './configure' FROM_OMPI=yes CC="gcc" CFLAGS="-DNDEBUG -fstack-protector -O3 -march=native -mtune=native -finline-functions -fno-strict-aliasing -pthread" CPPFLAGS=" -I/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/include -I/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent -I/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent/include" FFLAGS="-ffree-line-length-0 -O3 -march=native -mtune=native" LDFLAGS=" " --disable-shared --enable-static --prefix=/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64 --disable-aio --cache-file=/dev/null --srcdir=. --disable-option-checking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for style of include used by /usr/bin/make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking whether /usr/bin/make supports nested variables... (cached) yes Configuring with args dummy mt checking for Open MPI support files... in Open MPI source tree -- good checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes ROMIO home directory is /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for memalign... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... (cached) yes checking for u_char... yes checking for u_short... yes checking for u_int... yes checking for u_long... yes checking sys/attr.h usability... no checking sys/attr.h presence... no checking for sys/attr.h... no checking size of int... 4 checking size of void *... 8 checking for int large enough for pointers... no checking size of long long... 8 checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for stat... yes checking for st_fstype member of stat structure... no checking for sys/types.h... (cached) yes checking for sys/statvfs.h... (cached) yes checking for sys/vfs.h... (cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for unistd.h... (cached) yes checking for large file defines... yes checking whether off64_t is an scalar type... yes checking for strerror... yes checking for doctext... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... yes checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to : setting TEST_CC to mpicc setting TEST_F77 to mpif77 setting CFLAGS to -DNDEBUG -fstack-protector -O3 -march=native -mtune=native -finline-functions -fno-strict-aliasing -pthread -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: adio/include/romioconf.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: /bin/bash './configure' succeeded for ompi/mca/io/romio/romio ROMIO distribution configured successfully checking if MCA component io:romio can compile... yes +++ Configuring MCA framework mpool checking for no configure components in framework mpool... grdma, sm checking for m4 configure components in framework mpool... udreg, rgpusm, gpusm --- MCA component mpool:grdma (no configuration) checking for MCA component mpool:grdma compile mode... static checking if MCA component mpool:grdma can compile... yes --- MCA component mpool:sm (no configuration) checking for MCA component mpool:sm compile mode... static checking if MCA component mpool:sm can compile... yes --- MCA component mpool:udreg (m4 configuration macro) checking for MCA component mpool:udreg compile mode... static checking --with-udreg value... simple ok (unspecified) checking udreg_pub.h usability... no checking udreg_pub.h presence... no checking for udreg_pub.h... no checking if MCA component mpool:udreg can compile... no --- MCA component mpool:rgpusm (m4 configuration macro) checking for MCA component mpool:rgpusm compile mode... static checking if MCA component mpool:rgpusm can compile... no --- MCA component mpool:gpusm (m4 configuration macro) checking for MCA component mpool:gpusm compile mode... static checking if MCA component mpool:gpusm can compile... no +++ Configuring MCA framework mtl checking for no configure components in framework mtl... checking for m4 configure components in framework mtl... psm, mxm, portals4, mx --- MCA component mtl:psm (m4 configuration macro) checking for MCA component mtl:psm compile mode... static checking --with-psm value... simple ok (unspecified) checking --with-psm-libdir value... simple ok (unspecified) checking psm.h usability... no checking psm.h presence... no checking for psm.h... no checking if MCA component mtl:psm can compile... no --- MCA component mtl:mxm (m4 configuration macro) checking for MCA component mtl:mxm compile mode... static checking --with-mxm value... simple ok (unspecified) checking --with-mxm-libdir value... simple ok (unspecified) checking mxm/api/mxm_api.h usability... no checking mxm/api/mxm_api.h presence... no checking for mxm/api/mxm_api.h... no checking for MXM version compatibility... no checking if MCA component mtl:mxm can compile... no --- MCA component mtl:portals4 (m4 configuration macro) checking for MCA component mtl:portals4 compile mode... static checking --with-portals4 value... simple ok (unspecified) checking --with-portals4-libdir value... simple ok (unspecified) checking portals4.h usability... no checking portals4.h presence... no checking for portals4.h... no checking whether to enable flow control... yes checking if MCA component mtl:portals4 can compile... no --- MCA component mtl:mx (m4 configuration macro) checking for MCA component mtl:mx compile mode... static checking --with-mx value... simple ok (unspecified) checking --with-mx-libdir value... simple ok (unspecified) checking myriexpress.h usability... no checking myriexpress.h presence... no checking for myriexpress.h... no checking if MCA component mtl:mx can compile... no +++ Configuring MCA framework op checking for no configure components in framework op... checking for m4 configure components in framework op... +++ Configuring MCA framework osc checking for no configure components in framework osc... sm checking for m4 configure components in framework osc... rdma, portals4 --- MCA component osc:sm (no configuration) checking for MCA component osc:sm compile mode... static checking if MCA component osc:sm can compile... yes --- MCA component osc:rdma (m4 configuration macro) checking for MCA component osc:rdma compile mode... static checking if MCA component osc:rdma can compile... yes checking for index in endpoint array for tag BML... 0 --- MCA component osc:portals4 (m4 configuration macro) checking for MCA component osc:portals4 compile mode... static checking --with-portals4 value... simple ok (unspecified) checking --with-portals4-libdir value... simple ok (unspecified) checking portals4.h usability... no checking portals4.h presence... no checking for portals4.h... no checking if MCA component osc:portals4 can compile... no +++ Configuring MCA framework pml checking for no configure components in framework pml... cm checking for m4 configure components in framework pml... bfo, crcpw, v, ob1 --- MCA component pml:cm (no configuration) checking for MCA component pml:cm compile mode... static checking if MCA component pml:cm can compile... yes --- MCA component pml:bfo (m4 configuration macro) checking for MCA component pml:bfo compile mode... static checking if MCA component pml:bfo can compile... yes checking for index in endpoint array for tag BML... 0 --- MCA component pml:crcpw (m4 configuration macro) checking for MCA component pml:crcpw compile mode... static checking if MCA component pml:crcpw can compile... no --- MCA component pml:v (m4 configuration macro) checking for MCA component pml:v compile mode... static checking if MCA component pml:v can compile... yes --- MCA component pml:ob1 (m4 configuration macro) checking for MCA component pml:ob1 compile mode... static checking if MCA component pml:ob1 can compile... yes checking for index in endpoint array for tag BML... 0 +++ Configuring MCA framework pubsub checking for no configure components in framework pubsub... checking for m4 configure components in framework pubsub... pmi, orte --- MCA component pubsub:pmi (m4 configuration macro) checking for MCA component pubsub:pmi compile mode... static checking if user requested PMI support... no checking if MCA component pubsub:pmi can compile... no --- MCA component pubsub:orte (m4 configuration macro) checking for MCA component pubsub:orte compile mode... static checking if MCA component pubsub:orte can compile... yes +++ Configuring MCA framework rcache checking for no configure components in framework rcache... vma checking for m4 configure components in framework rcache... --- MCA component rcache:vma (no configuration) checking for MCA component rcache:vma compile mode... static checking if MCA component rcache:vma can compile... yes +++ Configuring MCA framework rte checking for no configure components in framework rte... checking for m4 configure components in framework rte... orte --- MCA component rte:orte (m4 configuration macro, priority 100) checking for MCA component rte:orte compile mode... static checking if MCA component rte:orte can compile... yes +++ Configuring MCA framework sbgp checking for no configure components in framework sbgp... basesmuma checking for m4 configure components in framework sbgp... basesmsocket, p2p --- MCA component sbgp:basesmuma (no configuration) checking for MCA component sbgp:basesmuma compile mode... static checking if MCA component sbgp:basesmuma can compile... yes --- MCA component sbgp:basesmsocket (m4 configuration macro) checking for MCA component sbgp:basesmsocket compile mode... static checking if MCA component sbgp:basesmsocket can compile... yes --- MCA component sbgp:p2p (m4 configuration macro) checking for MCA component sbgp:p2p compile mode... static checking if MCA component sbgp:p2p can compile... yes checking for index in endpoint array for tag BML... 0 +++ Configuring MCA framework sharedfp checking for no configure components in framework sharedfp... individual, sm, lockedfile checking for m4 configure components in framework sharedfp... --- MCA component sharedfp:individual (no configuration) checking for MCA component sharedfp:individual compile mode... static checking if MCA component sharedfp:individual can compile... yes --- MCA component sharedfp:sm (no configuration) checking for MCA component sharedfp:sm compile mode... static checking if MCA component sharedfp:sm can compile... yes --- MCA component sharedfp:lockedfile (no configuration) checking for MCA component sharedfp:lockedfile compile mode... static checking if MCA component sharedfp:lockedfile can compile... yes +++ Configuring MCA framework topo checking for no configure components in framework topo... basic checking for m4 configure components in framework topo... --- MCA component topo:basic (no configuration) checking for MCA component topo:basic compile mode... static checking if MCA component topo:basic can compile... yes +++ Configuring MCA framework vprotocol checking for no configure components in framework vprotocol... pessimist checking for m4 configure components in framework vprotocol... --- MCA component vprotocol:pessimist (no configuration) checking for MCA component vprotocol:pessimist compile mode... static checking if MCA component vprotocol:pessimist can compile... yes *** Configuring MCA for oshmem checking for frameworks for oshmem... atomic, memheap, scoll, spml, sshmem +++ Configuring MCA framework atomic checking for no configure components in framework atomic... basic checking for m4 configure components in framework atomic... mxm --- MCA component atomic:basic (no configuration) checking for MCA component atomic:basic compile mode... static checking if MCA component atomic:basic can compile... yes --- MCA component atomic:mxm (m4 configuration macro) checking for MCA component atomic:mxm compile mode... static checking --with-mxm value... simple ok (unspecified) checking --with-mxm-libdir value... simple ok (unspecified) checking mxm/api/mxm_api.h usability... no checking mxm/api/mxm_api.h presence... no checking for mxm/api/mxm_api.h... no checking for MXM version compatibility... no checking if oshmem/atomic/mxm component can be compiled... no checking if MCA component atomic:mxm can compile... no +++ Configuring MCA framework memheap checking for no configure components in framework memheap... ptmalloc, buddy checking for m4 configure components in framework memheap... --- MCA component memheap:ptmalloc (no configuration) checking for MCA component memheap:ptmalloc compile mode... static checking if MCA component memheap:ptmalloc can compile... yes --- MCA component memheap:buddy (no configuration) checking for MCA component memheap:buddy compile mode... static checking if MCA component memheap:buddy can compile... yes +++ Configuring MCA framework scoll checking for no configure components in framework scoll... basic, mpi checking for m4 configure components in framework scoll... fca --- MCA component scoll:basic (no configuration) checking for MCA component scoll:basic compile mode... static checking if MCA component scoll:basic can compile... yes --- MCA component scoll:mpi (no configuration) checking for MCA component scoll:mpi compile mode... static checking if MCA component scoll:mpi can compile... yes --- MCA component scoll:fca (m4 configuration macro) checking for MCA component scoll:fca compile mode... static checking --with-fca value... simple ok (unspecified) checking if MCA component scoll:fca can compile... no +++ Configuring MCA framework spml checking for no configure components in framework spml... yoda checking for m4 configure components in framework spml... ikrit --- MCA component spml:yoda (no configuration) checking for MCA component spml:yoda compile mode... static checking if MCA component spml:yoda can compile... yes --- MCA component spml:ikrit (m4 configuration macro) checking for MCA component spml:ikrit compile mode... static checking --with-mxm value... simple ok (unspecified) checking --with-mxm-libdir value... simple ok (unspecified) checking mxm/api/mxm_api.h usability... no checking mxm/api/mxm_api.h presence... no checking for mxm/api/mxm_api.h... no checking for MXM version compatibility... no checking if MCA component spml:ikrit can compile... no +++ Configuring MCA framework sshmem checking for no configure components in framework sshmem... checking for m4 configure components in framework sshmem... mmap, verbs, sysv --- MCA component sshmem:mmap (m4 configuration macro) checking for MCA component sshmem:mmap compile mode... static checking if want mmap shared memory support... yes checking for library containing mmap... (cached) none required checking if MCA component sshmem:mmap can compile... yes --- MCA component sshmem:verbs (m4 configuration macro) checking for MCA component sshmem:verbs compile mode... static checking if want verbs shared memory support... yes checking if want to add padding to the openib BTL control header... no checking for fcntl.h... (cached) yes checking for sys/poll.h... (cached) yes checking infiniband/verbs.h usability... yes checking infiniband/verbs.h presence... yes checking for infiniband/verbs.h... yes looking for library without search path checking for library containing ibv_open_device... -libverbs checking number of arguments to ibv_create_cq... (cached) 5 checking whether IBV_EVENT_CLIENT_REREGISTER is declared... (cached) yes checking whether IBV_ACCESS_SO is declared... (cached) no checking whether IBV_TRANSPORT_USNIC is declared... (cached) yes checking whether IBV_TRANSPORT_USNIC_UDP is declared... (cached) yes checking whether IBV_NODE_USNIC is declared... (cached) yes checking for ibv_get_device_list... (cached) yes checking for ibv_resize_cq... (cached) yes checking for struct ibv_device.transport_type... (cached) yes checking for ibv_create_xrc_rcv_qp... (cached) no checking for ibv_cmd_open_xrcd... (cached) yes checking whether IBV_SRQT_XRC is declared... (cached) no checking for infiniband/complib/cl_types_osd.h... (cached) no checking if can use dynamic SL support... no checking whether IBV_LINK_LAYER_ETHERNET is declared... (cached) yes checking if RDMAoE support is enabled... yes checking for infiniband/driver.h... (cached) yes checking if ConnectX XRC support is enabled... no checking if ConnectIB XRC support is enabled... no checking if dynamic SL is enabled... no checking whether IBV_ACCESS_ALLOCATE_MR is declared... no checking whether IBV_ACCESS_SHARED_MR_USER_READ is declared... no checking whether IBV_EXP_ACCESS_ALLOCATE_MR is declared... no checking whether IBV_EXP_ACCESS_SHARED_MR_USER_READ is declared... no checking if MCA component sshmem:verbs can compile... no --- MCA component sshmem:sysv (m4 configuration macro) checking for MCA component sshmem:sysv compile mode... static checking if want SYSV shared memory support... yes checking for shmget... (cached) yes checking if MCA component sshmem:sysv can compile... yes checking for size of endpoint array... 1 ============================================================================ == Extended MPI interfaces setup ============================================================================ checking for available MPI Extensions... affinity, cr checking which MPI extension should be enabled... --- MPI Extension affinity checking if MPI Extension affinity can compile... no --- MPI Extension cr checking if MPI Extension cr can compile... no ============================================================================ == Contributed software setup ============================================================================ *** Configuring contributed software packages checking which contributed software packages should be disabled... --- vt (m4 configuration macro) configure: disabled via command line switch --- libompitrace (m4 configuration macro) checking if contributed component libompitrace can compile... yes ============================================================================ == Symbol visibility feature ============================================================================ checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) ============================================================================ == Final top-level OMPI configuration ============================================================================ *** Libtool configuration checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... yes checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate configure: creating ./config.lt config.lt: creating libtool *** Compiler flags checking which of CFLAGS are ok for debugger modules... -DNDEBUG -fstack-protector -march=native -mtune=native -fno-strict-aliasing -pthread checking for debugger extra CFLAGS... -g *** Wrapper compiler final setup checking for perl... /usr/bin/perl checking if linker supports RPATH... yes (-Wl,-rpath -Wl,LIBDIR) checking if linker supports RUNPATH... yes (-Wl,--enable-new-dtags) checking for OPAL CPPFLAGS... checking for OPAL CFLAGS... -pthread checking for OPAL CFLAGS_PREFIX... checking for OPAL CXXFLAGS... -pthread checking for OPAL CXXFLAGS_PREFIX... checking for OPAL LDFLAGS... -Wl,-rpath -Wl,@{libdir} -Wl,--enable-new-dtags checking for OPAL pkg-config LDFLAGS... -Wl,-rpath -Wl,${libdir} -Wl,--enable-new-dtags checking for OPAL LIBS... -lm -lnuma -lrt -lutil checking for OPAL extra include dirs... checking for ORTE CPPFLAGS... checking for ORTE CFLAGS... -pthread checking for ORTE CFLAGS_PREFIX... checking for ORTE LDFLAGS... -Wl,-rpath -Wl,@{libdir} -Wl,--enable-new-dtags checking for ORTE pkg-config LDFLAGS... -Wl,-rpath -Wl,${libdir} -Wl,--enable-new-dtags checking for ORTE LIBS... -lm -lnuma -lrt -lutil checking for ORTE extra include dirs... checking for OMPI CPPFLAGS... checking for OMPI CFLAGS... -pthread checking for OMPI CFLAGS_PREFIX... checking for OMPI CXXFLAGS... -pthread checking for OMPI CXXFLAGS_PREFIX... checking for OMPI FCFLAGS... -pthread checking for OMPI FCFLAGS_PREFIX... checking for OMPI LDFLAGS... -Wl,-rpath -Wl,@{libdir} -Wl,--enable-new-dtags checking for OMPI pkg-config LDFLAGS... -Wl,-rpath -Wl,${libdir} -Wl,--enable-new-dtags checking for OMPI LIBS... -lm -lnuma -lrt -libverbs -lutil checking for OMPI extra include dirs... checking if libtool needs -no-undefined flag to build shared libraries... no *** Final output checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating ompi/include/ompi/version.h config.status: creating orte/include/orte/version.h config.status: creating oshmem/include/oshmem/version.h config.status: creating opal/include/opal/version.h config.status: creating ompi/mpi/java/Makefile config.status: creating ompi/mpi/java/java/Makefile config.status: creating ompi/mpi/java/c/Makefile config.status: creating ompi/mpi/fortran/configure-fortran-output.h config.status: creating opal/mca/hwloc/Makefile config.status: creating opal/mca/hwloc/hwloc191/Makefile config.status: creating opal/mca/hwloc/hwloc191/hwloc/Makefile config.status: creating opal/mca/hwloc/hwloc191/hwloc/include/Makefile config.status: creating opal/mca/hwloc/hwloc191/hwloc/src/Makefile config.status: creating opal/mca/hwloc/external/Makefile config.status: creating opal/mca/common/Makefile config.status: creating opal/mca/common/pmi/Makefile config.status: creating opal/mca/backtrace/Makefile config.status: creating opal/mca/backtrace/printstack/Makefile config.status: creating opal/mca/backtrace/execinfo/Makefile config.status: creating opal/mca/backtrace/none/Makefile config.status: creating opal/mca/compress/Makefile config.status: creating opal/mca/compress/gzip/Makefile config.status: creating opal/mca/compress/bzip/Makefile config.status: creating opal/mca/crs/Makefile config.status: creating opal/mca/crs/none/Makefile config.status: creating opal/mca/crs/dmtcp/Makefile config.status: creating opal/mca/crs/self/Makefile config.status: creating opal/mca/crs/blcr/Makefile config.status: creating opal/mca/db/Makefile config.status: creating opal/mca/db/print/Makefile config.status: creating opal/mca/db/hash/Makefile config.status: creating opal/mca/db/pmi/Makefile config.status: creating opal/mca/db/sqlite/Makefile config.status: creating opal/mca/dl/Makefile config.status: creating opal/mca/dl/dlopen/Makefile config.status: creating opal/mca/dl/libltdl/Makefile config.status: creating opal/mca/event/Makefile config.status: creating opal/mca/event/external/Makefile config.status: creating opal/mca/event/libevent2021/Makefile config.status: creating opal/mca/if/Makefile config.status: creating opal/mca/if/solaris_ipv6/Makefile config.status: creating opal/mca/if/bsdx_ipv4/Makefile config.status: creating opal/mca/if/bsdx_ipv6/Makefile config.status: creating opal/mca/if/posix_ipv4/Makefile config.status: creating opal/mca/if/linux_ipv6/Makefile config.status: creating opal/mca/installdirs/Makefile config.status: creating opal/mca/installdirs/env/Makefile config.status: creating opal/mca/installdirs/config/Makefile config.status: creating opal/mca/installdirs/config/install_dirs.h config.status: creating opal/mca/memchecker/Makefile config.status: creating opal/mca/memchecker/valgrind/Makefile config.status: creating opal/mca/memcpy/Makefile config.status: creating opal/mca/memory/Makefile config.status: creating opal/mca/memory/linux/Makefile config.status: creating opal/mca/memory/malloc_solaris/Makefile config.status: creating opal/mca/pstat/Makefile config.status: creating opal/mca/pstat/linux/Makefile config.status: creating opal/mca/pstat/test/Makefile config.status: creating opal/mca/sec/Makefile config.status: creating opal/mca/sec/basic/Makefile config.status: creating opal/mca/sec/keystone/Makefile config.status: creating opal/mca/shmem/Makefile config.status: creating opal/mca/shmem/mmap/Makefile config.status: creating opal/mca/shmem/posix/Makefile config.status: creating opal/mca/shmem/sysv/Makefile config.status: creating opal/mca/timer/Makefile config.status: creating opal/mca/timer/altix/Makefile config.status: creating opal/mca/timer/catamount/Makefile config.status: creating opal/mca/timer/solaris/Makefile config.status: creating opal/mca/timer/linux/Makefile config.status: creating opal/mca/timer/aix/Makefile config.status: creating opal/mca/timer/darwin/Makefile config.status: creating orte/mca/dfs/Makefile config.status: creating orte/mca/dfs/test/Makefile config.status: creating orte/mca/dfs/app/Makefile config.status: creating orte/mca/dfs/orted/Makefile config.status: creating orte/mca/errmgr/Makefile config.status: creating orte/mca/errmgr/default_tool/Makefile config.status: creating orte/mca/errmgr/default_hnp/Makefile config.status: creating orte/mca/errmgr/default_orted/Makefile config.status: creating orte/mca/errmgr/default_app/Makefile config.status: creating orte/mca/ess/Makefile config.status: creating orte/mca/ess/tool/Makefile config.status: creating orte/mca/ess/hnp/Makefile config.status: creating orte/mca/ess/singleton/Makefile config.status: creating orte/mca/ess/env/Makefile config.status: creating orte/mca/ess/pmi/Makefile config.status: creating orte/mca/ess/slurm/Makefile config.status: creating orte/mca/ess/alps/Makefile config.status: creating orte/mca/ess/lsf/Makefile config.status: creating orte/mca/ess/tm/Makefile config.status: creating orte/mca/filem/Makefile config.status: creating orte/mca/filem/raw/Makefile config.status: creating orte/mca/grpcomm/Makefile config.status: creating orte/mca/grpcomm/bad/Makefile config.status: creating orte/mca/grpcomm/pmi/Makefile config.status: creating orte/mca/iof/Makefile config.status: creating orte/mca/iof/mr_orted/Makefile config.status: creating orte/mca/iof/tool/Makefile config.status: creating orte/mca/iof/hnp/Makefile config.status: creating orte/mca/iof/orted/Makefile config.status: creating orte/mca/iof/mr_hnp/Makefile config.status: creating orte/mca/odls/Makefile config.status: creating orte/mca/odls/default/Makefile config.status: creating orte/mca/oob/Makefile config.status: creating orte/mca/oob/tcp/Makefile config.status: creating orte/mca/plm/Makefile config.status: creating orte/mca/plm/isolated/Makefile config.status: creating orte/mca/plm/slurm/Makefile config.status: creating orte/mca/plm/alps/Makefile config.status: creating orte/mca/plm/rsh/Makefile config.status: creating orte/mca/plm/lsf/Makefile config.status: creating orte/mca/plm/tm/Makefile config.status: creating orte/mca/ras/Makefile config.status: creating orte/mca/ras/simulator/Makefile config.status: creating orte/mca/ras/loadleveler/Makefile config.status: creating orte/mca/ras/slurm/Makefile config.status: creating orte/mca/ras/alps/Makefile config.status: creating orte/mca/ras/gridengine/Makefile config.status: creating orte/mca/ras/lsf/Makefile config.status: creating orte/mca/ras/tm/Makefile config.status: creating orte/mca/rmaps/Makefile config.status: creating orte/mca/rmaps/resilient/Makefile config.status: creating orte/mca/rmaps/seq/Makefile config.status: creating orte/mca/rmaps/round_robin/Makefile config.status: creating orte/mca/rmaps/ppr/Makefile config.status: creating orte/mca/rmaps/staged/Makefile config.status: creating orte/mca/rmaps/mindist/Makefile config.status: creating orte/mca/rmaps/lama/Makefile config.status: creating orte/mca/rmaps/rank_file/Makefile config.status: creating orte/mca/rml/Makefile config.status: creating orte/mca/rml/oob/Makefile config.status: creating orte/mca/rml/ftrm/Makefile config.status: creating orte/mca/routed/Makefile config.status: creating orte/mca/routed/direct/Makefile config.status: creating orte/mca/routed/radix/Makefile config.status: creating orte/mca/routed/debruijn/Makefile config.status: creating orte/mca/routed/binomial/Makefile config.status: creating orte/mca/sensor/Makefile config.status: creating orte/mca/sensor/resusage/Makefile config.status: creating orte/mca/sensor/file/Makefile config.status: creating orte/mca/sensor/heartbeat/Makefile config.status: creating orte/mca/sensor/ft_tester/Makefile config.status: creating orte/mca/snapc/Makefile config.status: creating orte/mca/snapc/full/Makefile config.status: creating orte/mca/sstore/Makefile config.status: creating orte/mca/sstore/stage/Makefile config.status: creating orte/mca/sstore/central/Makefile config.status: creating orte/mca/state/Makefile config.status: creating orte/mca/state/app/Makefile config.status: creating orte/mca/state/staged_orted/Makefile config.status: creating orte/mca/state/staged_hnp/Makefile config.status: creating orte/mca/state/tool/Makefile config.status: creating orte/mca/state/hnp/Makefile config.status: creating orte/mca/state/orted/Makefile config.status: creating orte/mca/state/novm/Makefile config.status: creating ompi/mca/common/Makefile config.status: creating ompi/mca/common/ugni/Makefile config.status: creating ompi/mca/common/sm/Makefile config.status: creating ompi/mca/common/mx/Makefile config.status: creating ompi/mca/common/verbs/Makefile config.status: creating ompi/mca/common/cuda/Makefile config.status: creating ompi/mca/allocator/Makefile config.status: creating ompi/mca/allocator/bucket/Makefile config.status: creating ompi/mca/allocator/basic/Makefile config.status: creating ompi/mca/bcol/Makefile config.status: creating ompi/mca/bcol/ptpcoll/Makefile config.status: creating ompi/mca/bcol/basesmuma/Makefile config.status: creating ompi/mca/bml/Makefile config.status: creating ompi/mca/bml/r2/Makefile config.status: creating ompi/mca/btl/Makefile config.status: creating ompi/mca/btl/self/Makefile config.status: creating ompi/mca/btl/smcuda/Makefile config.status: creating ompi/mca/btl/ugni/Makefile config.status: creating ompi/mca/btl/sm/Makefile config.status: creating ompi/mca/btl/scif/Makefile config.status: creating ompi/mca/btl/portals4/Makefile config.status: creating ompi/mca/btl/tcp/Makefile config.status: creating ompi/mca/btl/openib/Makefile config.status: creating ompi/mca/btl/vader/Makefile config.status: creating ompi/mca/btl/usnic/Makefile config.status: creating ompi/mca/coll/Makefile config.status: creating ompi/mca/coll/tuned/Makefile config.status: creating ompi/mca/coll/libnbc/Makefile config.status: creating ompi/mca/coll/self/Makefile config.status: creating ompi/mca/coll/sm/Makefile config.status: creating ompi/mca/coll/basic/Makefile config.status: creating ompi/mca/coll/inter/Makefile config.status: creating ompi/mca/coll/hierarch/Makefile config.status: creating ompi/mca/coll/hcoll/Makefile config.status: creating ompi/mca/coll/ml/Makefile config.status: creating ompi/mca/coll/fca/Makefile config.status: creating ompi/mca/coll/portals4/Makefile config.status: creating ompi/mca/coll/cuda/Makefile config.status: creating ompi/mca/crcp/Makefile config.status: creating ompi/mca/crcp/bkmrk/Makefile config.status: creating ompi/mca/dpm/Makefile config.status: creating ompi/mca/dpm/orte/Makefile config.status: creating ompi/mca/fbtl/Makefile config.status: creating ompi/mca/fbtl/pvfs2/Makefile config.status: creating ompi/mca/fbtl/posix/Makefile config.status: creating ompi/mca/fcoll/Makefile config.status: creating ompi/mca/fcoll/individual/Makefile config.status: creating ompi/mca/fcoll/dynamic/Makefile config.status: creating ompi/mca/fcoll/ylib/Makefile config.status: creating ompi/mca/fcoll/static/Makefile config.status: creating ompi/mca/fcoll/two_phase/Makefile config.status: creating ompi/mca/fs/Makefile config.status: creating ompi/mca/fs/ufs/Makefile config.status: creating ompi/mca/fs/pvfs2/Makefile config.status: creating ompi/mca/io/Makefile config.status: creating ompi/mca/io/ompio/Makefile config.status: creating ompi/mca/io/romio/Makefile config.status: creating ompi/mca/mpool/Makefile config.status: creating ompi/mca/mpool/grdma/Makefile config.status: creating ompi/mca/mpool/sm/Makefile config.status: creating ompi/mca/mpool/udreg/Makefile config.status: creating ompi/mca/mpool/rgpusm/Makefile config.status: creating ompi/mca/mpool/gpusm/Makefile config.status: creating ompi/mca/mtl/Makefile config.status: creating ompi/mca/mtl/psm/Makefile config.status: creating ompi/mca/mtl/mxm/Makefile config.status: creating ompi/mca/mtl/portals4/Makefile config.status: creating ompi/mca/mtl/mx/Makefile config.status: creating ompi/mca/op/Makefile config.status: creating ompi/mca/osc/Makefile config.status: creating ompi/mca/osc/sm/Makefile config.status: creating ompi/mca/osc/rdma/Makefile config.status: creating ompi/mca/osc/portals4/Makefile config.status: creating ompi/mca/pml/Makefile config.status: creating ompi/mca/pml/cm/Makefile config.status: creating ompi/mca/pml/bfo/Makefile config.status: creating ompi/mca/pml/crcpw/Makefile config.status: creating ompi/mca/pml/v/Makefile config.status: creating ompi/mca/pml/ob1/Makefile config.status: creating ompi/mca/pubsub/Makefile config.status: creating ompi/mca/pubsub/pmi/Makefile config.status: creating ompi/mca/pubsub/orte/Makefile config.status: creating ompi/mca/rcache/Makefile config.status: creating ompi/mca/rcache/vma/Makefile config.status: creating ompi/mca/rte/Makefile config.status: creating ompi/mca/rte/orte/Makefile config.status: creating ompi/mca/sbgp/Makefile config.status: creating ompi/mca/sbgp/basesmuma/Makefile config.status: creating ompi/mca/sbgp/basesmsocket/Makefile config.status: creating ompi/mca/sbgp/p2p/Makefile config.status: creating ompi/mca/sharedfp/Makefile config.status: creating ompi/mca/sharedfp/individual/Makefile config.status: creating ompi/mca/sharedfp/sm/Makefile config.status: creating ompi/mca/sharedfp/lockedfile/Makefile config.status: creating ompi/mca/topo/Makefile config.status: creating ompi/mca/topo/basic/Makefile config.status: creating ompi/mca/vprotocol/Makefile config.status: creating ompi/mca/vprotocol/pessimist/Makefile config.status: creating oshmem/mca/atomic/Makefile config.status: creating oshmem/mca/atomic/basic/Makefile config.status: creating oshmem/mca/atomic/mxm/Makefile config.status: creating oshmem/mca/memheap/Makefile config.status: creating oshmem/mca/memheap/ptmalloc/Makefile config.status: creating oshmem/mca/memheap/buddy/Makefile config.status: creating oshmem/mca/scoll/Makefile config.status: creating oshmem/mca/scoll/basic/Makefile config.status: creating oshmem/mca/scoll/mpi/Makefile config.status: creating oshmem/mca/scoll/fca/Makefile config.status: creating oshmem/mca/spml/Makefile config.status: creating oshmem/mca/spml/yoda/Makefile config.status: creating oshmem/mca/spml/ikrit/Makefile config.status: creating oshmem/mca/sshmem/Makefile config.status: creating oshmem/mca/sshmem/mmap/Makefile config.status: creating oshmem/mca/sshmem/verbs/Makefile config.status: creating oshmem/mca/sshmem/sysv/Makefile config.status: creating ompi/mpiext/affinity/Makefile config.status: creating ompi/mpiext/affinity/c/Makefile config.status: creating ompi/mpiext/cr/Makefile config.status: creating ompi/mpiext/cr/c/Makefile config.status: creating ompi/contrib/libompitrace/Makefile config.status: creating Makefile config.status: creating config/Makefile config.status: creating contrib/Makefile config.status: creating contrib/dist/mofed/debian/changelog config.status: creating contrib/dist/mofed/debian/control config.status: creating contrib/dist/mofed/debian/copyright config.status: creating test/Makefile config.status: creating test/event/Makefile config.status: creating test/asm/Makefile config.status: creating test/datatype/Makefile config.status: creating test/class/Makefile config.status: creating test/support/Makefile config.status: creating test/threads/Makefile config.status: creating test/util/Makefile config.status: creating contrib/dist/mofed/debian/rules config.status: creating contrib/dist/mofed/compile_debian_mlnx_example config.status: creating opal/Makefile config.status: creating opal/etc/Makefile config.status: creating opal/include/Makefile config.status: creating opal/asm/Makefile config.status: creating opal/datatype/Makefile config.status: creating opal/util/Makefile config.status: creating opal/util/keyval/Makefile config.status: creating opal/mca/base/Makefile config.status: creating opal/tools/wrappers/Makefile config.status: creating opal/tools/wrappers/opalcc-wrapper-data.txt config.status: creating opal/tools/wrappers/opalc++-wrapper-data.txt config.status: creating opal/tools/wrappers/opal.pc config.status: creating opal/tools/opal-checkpoint/Makefile config.status: creating opal/tools/opal-restart/Makefile config.status: creating orte/Makefile config.status: creating orte/include/Makefile config.status: creating orte/etc/Makefile config.status: creating orte/tools/orted/Makefile config.status: creating orte/tools/orterun/Makefile config.status: creating orte/tools/wrappers/Makefile config.status: creating orte/tools/wrappers/ortecc-wrapper-data.txt config.status: creating orte/tools/wrappers/orte.pc config.status: creating orte/tools/orte-checkpoint/Makefile config.status: creating orte/tools/orte-restart/Makefile config.status: creating orte/tools/orte-ps/Makefile config.status: creating orte/tools/orte-clean/Makefile config.status: creating orte/tools/orte-top/Makefile config.status: creating orte/tools/orte-migrate/Makefile config.status: creating orte/tools/orte-info/Makefile config.status: creating orte/tools/orte-server/Makefile config.status: creating ompi/Makefile config.status: creating ompi/etc/Makefile config.status: creating ompi/include/Makefile config.status: creating ompi/include/mpif.h config.status: creating ompi/include/mpif-config.h config.status: creating ompi/datatype/Makefile config.status: creating ompi/debuggers/Makefile config.status: creating ompi/mpi/c/Makefile config.status: creating ompi/mpi/c/profile/Makefile config.status: creating ompi/mpi/cxx/Makefile config.status: creating ompi/mpi/fortran/base/Makefile config.status: creating ompi/mpi/fortran/mpif-h/Makefile config.status: creating ompi/mpi/fortran/mpif-h/profile/Makefile config.status: creating ompi/mpi/fortran/use-mpi-tkr/Makefile config.status: creating ompi/mpi/fortran/use-mpi-tkr/fortran_sizes.h config.status: creating ompi/mpi/fortran/use-mpi-tkr/fortran_kinds.sh config.status: creating ompi/mpi/fortran/use-mpi-ignore-tkr/Makefile config.status: creating ompi/mpi/fortran/use-mpi-ignore-tkr/mpi-ignore-tkr-interfaces.h config.status: creating ompi/mpi/fortran/use-mpi-ignore-tkr/mpi-ignore-tkr-file-interfaces.h config.status: creating ompi/mpi/fortran/use-mpi-f08/Makefile config.status: creating ompi/mpi/fortran/use-mpi-f08-desc/Makefile config.status: creating ompi/mpi/fortran/mpiext/Makefile config.status: creating ompi/mpi/tool/Makefile config.status: creating ompi/mpi/tool/profile/Makefile config.status: creating ompi/tools/ompi_info/Makefile config.status: creating ompi/tools/wrappers/Makefile config.status: creating ompi/tools/wrappers/mpicc-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpic++-wrapper-data.txt config.status: creating ompi/tools/wrappers/mpifort-wrapper-data.txt config.status: creating ompi/tools/wrappers/ompi.pc config.status: creating ompi/tools/wrappers/ompi-c.pc config.status: creating ompi/tools/wrappers/ompi-cxx.pc config.status: creating ompi/tools/wrappers/ompi-fort.pc config.status: creating ompi/tools/wrappers/mpijavac.pl config.status: creating oshmem/Makefile config.status: creating oshmem/include/Makefile config.status: creating oshmem/shmem/c/Makefile config.status: creating oshmem/shmem/c/profile/Makefile config.status: creating oshmem/shmem/fortran/Makefile config.status: creating oshmem/shmem/fortran/profile/Makefile config.status: creating oshmem/tools/oshmem_info/Makefile config.status: creating oshmem/tools/wrappers/Makefile config.status: creating oshmem/tools/wrappers/shmemcc-wrapper-data.txt config.status: creating oshmem/tools/wrappers/shmemfort-wrapper-data.txt config.status: creating opal/include/opal_config.h config.status: opal/include/opal_config.h is unchanged config.status: creating orte/include/orte_config.h config.status: orte/include/orte_config.h is unchanged config.status: creating ompi/include/mpi.h config.status: ompi/include/mpi.h is unchanged config.status: creating oshmem/include/shmem.h config.status: oshmem/include/shmem.h is unchanged config.status: creating opal/mca/hwloc/hwloc191/hwloc/include/private/autogen/config.h config.status: opal/mca/hwloc/hwloc191/hwloc/include/private/autogen/config.h is unchanged config.status: creating opal/mca/hwloc/hwloc191/hwloc/include/hwloc/autogen/config.h config.status: opal/mca/hwloc/hwloc191/hwloc/include/hwloc/autogen/config.h is unchanged config.status: executing depfiles commands config.status: executing opal/mca/event/libevent2021/libevent/include/event2/event-config.h commands opal/mca/event/libevent2021/libevent/include/event2/event-config.h is unchanged config.status: executing libtool commands =============================================================================== Running make on OPENMPI; this may take several minutes =============================================================================== Executing: cd /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5 && /usr/bin/make clean stdout: Making clean in config make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/config' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/config' Making clean in contrib make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/contrib' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/contrib' Making clean in opal make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making clean in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' Making clean in asm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/asm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f atomic-asm.S test -z "libasm.la" || rm -f libasm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/asm' Making clean in datatype make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/datatype' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libdatatype_reliable.la libdatatype.la" || rm -f libdatatype_reliable.la libdatatype.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/datatype' Making clean in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/etc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/etc' Making clean in util make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' Making clean in keyval make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util/keyval' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libopalutilkeyval.la" || rm -f libopalutilkeyval.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util/keyval' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libopalutil.la" || rm -f libopalutil.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' Making clean in mca/base make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/base' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_base.la" || rm -f libmca_base.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/base' Making clean in mca/common make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/common' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/common' Making clean in mca/backtrace make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_backtrace.la" || rm -f libmca_backtrace.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace' Making clean in mca/compress make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_compress.la" || rm -f libmca_compress.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress' Making clean in mca/crs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_crs.la" || rm -f libmca_crs.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs' Making clean in mca/db make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_db.la" || rm -f libmca_db.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db' Making clean in mca/dl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_dl.la" || rm -f libmca_dl.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl' Making clean in mca/event make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_event.la" || rm -f libmca_event.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event' Making clean in mca/hwloc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_hwloc.la" || rm -f libmca_hwloc.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc' Making clean in mca/if make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_if.la" || rm -f libmca_if.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if' Making clean in mca/installdirs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_installdirs.la" || rm -f libmca_installdirs.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs' Making clean in mca/memchecker make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memchecker' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_memchecker.la" || rm -f libmca_memchecker.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memchecker' Making clean in mca/memcpy make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memcpy' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_memcpy.la" || rm -f libmca_memcpy.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memcpy' Making clean in mca/memory make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memory' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_memory.la" || rm -f libmca_memory.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memory' Making clean in mca/pstat make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_pstat.la" || rm -f libmca_pstat.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat' Making clean in mca/sec make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_sec.la" || rm -f libmca_sec.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec' Making clean in mca/shmem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_shmem.la" || rm -f libmca_shmem.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem' Making clean in mca/timer make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_timer.la" || rm -f libmca_timer.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer' Making clean in mca/backtrace/execinfo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace/execinfo' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_backtrace_execinfo.la" || rm -f libmca_backtrace_execinfo.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace/execinfo' Making clean in mca/compress/gzip make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/gzip' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_compress_gzip.la" || rm -f libmca_compress_gzip.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/gzip' Making clean in mca/compress/bzip make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/bzip' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_compress_bzip.la" || rm -f libmca_compress_bzip.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/bzip' Making clean in mca/crs/none make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs/none' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_crs_none.la" || rm -f libmca_crs_none.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs/none' Making clean in mca/db/print make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/print' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_db_print.la" || rm -f libmca_db_print.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/print' Making clean in mca/db/hash make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/hash' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_db_hash.la" || rm -f libmca_db_hash.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/hash' Making clean in mca/dl/dlopen make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl/dlopen' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_dl_dlopen.la" || rm -f libmca_dl_dlopen.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl/dlopen' Making clean in mca/event/libevent2021 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' Making clean in libevent make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' Making clean in . make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' rm -rf .libs _libs test -z "libevent.la" || rm -f libevent.la rm -f ./so_locations rm -f *.o rm -f *.lo make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' Making clean in include make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent/include' rm -rf .libs _libs rm -f *.lo make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent/include' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_event_libevent2021.la" || rm -f libmca_event_libevent2021.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' Making clean in mca/hwloc/hwloc191 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' Making clean in hwloc make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' Making clean in src make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/src' test -z "" || rm -f test -z "*~ .#*" || rm -f *~ .#* test -z "" || rm -f rm -rf .libs _libs test -z "libhwloc_embedded.la" || rm -f libhwloc_embedded.la rm -f ./so_locations test -z " " || rm -f rm -f *.o rm -f *.lo make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/src' Making clean in include make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/include' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/include' make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_hwloc_hwloc191.la" || rm -f libmca_hwloc_hwloc191.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' Making clean in mca/if/posix_ipv4 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/posix_ipv4' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_if_posix_ipv4.la" || rm -f libmca_if_posix_ipv4.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/posix_ipv4' Making clean in mca/if/linux_ipv6 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/linux_ipv6' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_if_linux_ipv6.la" || rm -f libmca_if_linux_ipv6.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/linux_ipv6' Making clean in mca/installdirs/env make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/env' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_installdirs_env.la" || rm -f libmca_installdirs_env.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/env' Making clean in mca/installdirs/config make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/config' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_installdirs_config.la" || rm -f libmca_installdirs_config.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/config' Making clean in mca/pstat/linux make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat/linux' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_pstat_linux.la" || rm -f libmca_pstat_linux.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat/linux' Making clean in mca/sec/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec/basic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sec_basic.la" || rm -f libmca_sec_basic.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec/basic' Making clean in mca/shmem/mmap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/mmap' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_shmem_mmap.la" || rm -f libmca_shmem_mmap.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/mmap' Making clean in mca/shmem/posix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/posix' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_shmem_posix.la" || rm -f libmca_shmem_posix.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/posix' Making clean in mca/shmem/sysv make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/sysv' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_shmem_sysv.la" || rm -f libmca_shmem_sysv.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/sysv' Making clean in mca/timer/linux make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer/linux' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmca_timer_linux.la" || rm -f libmca_timer_linux.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer/linux' Making clean in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' test -z "*~ .#*" || rm -f *~ .#* test -z "libopen-pal.la" || rm -f libopen-pal.la rm -f ./so_locations rm -rf .libs _libs rm -rf class/.libs class/_libs rm -rf dss/.libs dss/_libs rm -rf memoryhooks/.libs memoryhooks/_libs rm -rf runtime/.libs runtime/_libs rm -rf threads/.libs threads/_libs test -z "" || rm -f rm -f *.o rm -f class/*.o rm -f class/*.lo rm -f dss/*.o rm -f dss/*.lo rm -f memoryhooks/*.o rm -f memoryhooks/*.lo rm -f runtime/*.o rm -f runtime/*.lo rm -f threads/*.o rm -f threads/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making clean in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/tools/wrappers' rm -f opal_wrapper test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/tools/wrappers' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making clean in orte make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making clean in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' Making clean in mca/dfs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_dfs.la" || rm -f libmca_dfs.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs' Making clean in mca/errmgr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_errmgr.la" || rm -f libmca_errmgr.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr' Making clean in mca/ess make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_ess.la" || rm -f libmca_ess.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess' Making clean in mca/filem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_filem.la" || rm -f libmca_filem.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem' Making clean in mca/grpcomm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_grpcomm.la" || rm -f libmca_grpcomm.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm' Making clean in mca/iof make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_iof.la" || rm -f libmca_iof.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof' Making clean in mca/odls make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_odls.la" || rm -f libmca_odls.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls' Making clean in mca/oob make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_oob.la" || rm -f libmca_oob.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob' Making clean in mca/plm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_plm.la" || rm -f libmca_plm.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm' Making clean in mca/ras make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_ras.la" || rm -f libmca_ras.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras' Making clean in mca/rmaps make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_rmaps.la" || rm -f libmca_rmaps.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps' Making clean in mca/rml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_rml.la" || rm -f libmca_rml.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml' Making clean in mca/routed make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_routed.la" || rm -f libmca_routed.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed' Making clean in mca/sensor make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sensor' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_sensor.la" || rm -f libmca_sensor.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sensor' Making clean in mca/snapc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/snapc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_snapc.la" || rm -f libmca_snapc.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/snapc' Making clean in mca/sstore make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sstore' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_sstore.la" || rm -f libmca_sstore.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sstore' Making clean in mca/state make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_state.la" || rm -f libmca_state.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state' Making clean in mca/dfs/test make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/test' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_dfs_test.la" || rm -f libmca_dfs_test.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/test' Making clean in mca/dfs/app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/app' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_dfs_app.la" || rm -f libmca_dfs_app.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/app' Making clean in mca/dfs/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/orted' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_dfs_orted.la" || rm -f libmca_dfs_orted.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/orted' Making clean in mca/errmgr/default_tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_tool' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_errmgr_default_tool.la" || rm -f libmca_errmgr_default_tool.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_tool' Making clean in mca/errmgr/default_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_hnp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_errmgr_default_hnp.la" || rm -f libmca_errmgr_default_hnp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_hnp' Making clean in mca/errmgr/default_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_orted' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_errmgr_default_orted.la" || rm -f libmca_errmgr_default_orted.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_orted' Making clean in mca/errmgr/default_app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_app' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_errmgr_default_app.la" || rm -f libmca_errmgr_default_app.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_app' Making clean in mca/ess/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/tool' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_ess_tool.la" || rm -f libmca_ess_tool.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/tool' Making clean in mca/ess/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/hnp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_ess_hnp.la" || rm -f libmca_ess_hnp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/hnp' Making clean in mca/ess/singleton make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/singleton' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_ess_singleton.la" || rm -f libmca_ess_singleton.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/singleton' Making clean in mca/ess/env make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/env' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_ess_env.la" || rm -f libmca_ess_env.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/env' Making clean in mca/ess/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/slurm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_ess_slurm.la" || rm -f libmca_ess_slurm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/slurm' Making clean in mca/filem/raw make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem/raw' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_filem_raw.la" || rm -f libmca_filem_raw.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem/raw' Making clean in mca/grpcomm/bad make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm/bad' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_grpcomm_bad.la" || rm -f libmca_grpcomm_bad.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm/bad' Making clean in mca/iof/mr_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_orted' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_iof_mr_orted.la" || rm -f libmca_iof_mr_orted.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_orted' Making clean in mca/iof/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/tool' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_iof_tool.la" || rm -f libmca_iof_tool.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/tool' Making clean in mca/iof/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/hnp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_iof_hnp.la" || rm -f libmca_iof_hnp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/hnp' Making clean in mca/iof/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/orted' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_iof_orted.la" || rm -f libmca_iof_orted.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/orted' Making clean in mca/iof/mr_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_hnp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_iof_mr_hnp.la" || rm -f libmca_iof_mr_hnp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_hnp' Making clean in mca/odls/default make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls/default' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_odls_default.la" || rm -f libmca_odls_default.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls/default' Making clean in mca/oob/tcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob/tcp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_oob_tcp.la" || rm -f libmca_oob_tcp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob/tcp' Making clean in mca/plm/isolated make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/isolated' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_plm_isolated.la" || rm -f libmca_plm_isolated.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/isolated' Making clean in mca/plm/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/slurm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_plm_slurm.la" || rm -f libmca_plm_slurm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/slurm' Making clean in mca/plm/rsh make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/rsh' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_plm_rsh.la" || rm -f libmca_plm_rsh.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/rsh' Making clean in mca/ras/simulator make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/simulator' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_ras_simulator.la" || rm -f libmca_ras_simulator.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/simulator' Making clean in mca/ras/loadleveler make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/loadleveler' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_ras_loadleveler.la" || rm -f libmca_ras_loadleveler.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/loadleveler' Making clean in mca/ras/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/slurm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_ras_slurm.la" || rm -f libmca_ras_slurm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/slurm' Making clean in mca/rmaps/resilient make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/resilient' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rmaps_resilient.la" || rm -f libmca_rmaps_resilient.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/resilient' Making clean in mca/rmaps/seq make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/seq' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rmaps_seq.la" || rm -f libmca_rmaps_seq.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/seq' Making clean in mca/rmaps/round_robin make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/round_robin' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rmaps_round_robin.la" || rm -f libmca_rmaps_round_robin.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/round_robin' Making clean in mca/rmaps/ppr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/ppr' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rmaps_ppr.la" || rm -f libmca_rmaps_ppr.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/ppr' Making clean in mca/rmaps/staged make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/staged' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rmaps_staged.la" || rm -f libmca_rmaps_staged.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/staged' Making clean in mca/rmaps/mindist make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/mindist' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rmaps_mindist.la" || rm -f libmca_rmaps_mindist.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/mindist' Making clean in mca/rmaps/lama make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/lama' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rmaps_lama.la" || rm -f libmca_rmaps_lama.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/lama' Making clean in mca/rmaps/rank_file make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/rank_file' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rmaps_rank_file.la" || rm -f libmca_rmaps_rank_file.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/rank_file' Making clean in mca/rml/oob make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml/oob' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rml_oob.la" || rm -f libmca_rml_oob.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml/oob' Making clean in mca/routed/direct make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/direct' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_routed_direct.la" || rm -f libmca_routed_direct.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/direct' Making clean in mca/routed/radix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/radix' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_routed_radix.la" || rm -f libmca_routed_radix.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/radix' Making clean in mca/routed/debruijn make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/debruijn' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_routed_debruijn.la" || rm -f libmca_routed_debruijn.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/debruijn' Making clean in mca/routed/binomial make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/binomial' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_routed_binomial.la" || rm -f libmca_routed_binomial.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/binomial' Making clean in mca/state/app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/app' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_state_app.la" || rm -f libmca_state_app.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/app' Making clean in mca/state/staged_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_orted' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_state_staged_orted.la" || rm -f libmca_state_staged_orted.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_orted' Making clean in mca/state/staged_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_hnp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_state_staged_hnp.la" || rm -f libmca_state_staged_hnp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_hnp' Making clean in mca/state/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/tool' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_state_tool.la" || rm -f libmca_state_tool.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/tool' Making clean in mca/state/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/hnp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_state_hnp.la" || rm -f libmca_state_hnp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/hnp' Making clean in mca/state/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/orted' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_state_orted.la" || rm -f libmca_state_orted.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/orted' Making clean in mca/state/novm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/novm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_state_novm.la" || rm -f libmca_state_novm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/novm' Making clean in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/etc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/etc' Making clean in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' test -z "*~ .#*" || rm -f *~ .#* test -z "libopen-rte.la" || rm -f libopen-rte.la rm -f ./so_locations rm -rf .libs _libs rm -rf orted/.libs orted/_libs rm -rf runtime/.libs runtime/_libs rm -rf runtime/data_type_support/.libs runtime/data_type_support/_libs rm -rf util/.libs util/_libs rm -rf util/comm/.libs util/comm/_libs rm -rf util/dash_host/.libs util/dash_host/_libs rm -rf util/hostfile/.libs util/hostfile/_libs test -z "" || rm -f rm -f *.o rm -f orted/*.o rm -f orted/*.lo rm -f runtime/*.o rm -f runtime/*.lo rm -f runtime/data_type_support/*.o rm -f runtime/data_type_support/*.lo rm -f util/*.o rm -f util/*.lo rm -f util/comm/*.o rm -f util/comm/*.lo rm -f util/dash_host/*.o rm -f util/dash_host/*.lo rm -f util/hostfile/*.o rm -f util/hostfile/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making clean in tools/orte-checkpoint make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-checkpoint' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-checkpoint' Making clean in tools/orte-clean make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-clean' rm -f orte-clean test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-clean' Making clean in tools/orte-ps make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-ps' rm -f orte-ps test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-ps' Making clean in tools/orte-restart make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-restart' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-restart' Making clean in tools/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orted' rm -f orted test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orted' Making clean in tools/orterun make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orterun' rm -f orterun test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orterun' Making clean in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/wrappers' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/wrappers' Making clean in tools/orte-top make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-top' rm -f orte-top test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-top' Making clean in tools/orte-info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-info' rm -f orte-info test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -rf rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-info' Making clean in tools/orte-migrate make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-migrate' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-migrate' Making clean in tools/orte-server make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-server' rm -f orte-server test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-server' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making clean in ompi make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making clean in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' test -z "mpif-sizeof.f90" || rm -f mpif-sizeof.f90 rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' Making clean in datatype make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/datatype' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libdatatype.la" || rm -f libdatatype.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/datatype' Making clean in debuggers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/debuggers' rm -f predefined_gap_test dlopen_test test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libdebuggers.la libompi_debugger_canary.la" || rm -f libdebuggers.la libompi_debugger_canary.la rm -f ./so_locations test -z "libompi_dbg_msgq.la" || rm -f libompi_dbg_msgq.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/debuggers' Making clean in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/etc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/etc' Making clean in mpi/c make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' Making clean in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c/profile' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmpi_c_pmpi.la" || rm -f libmpi_c_pmpi.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmpi_c.la " || rm -f libmpi_c.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' Making clean in mpi/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' Making clean in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool/profile' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmpi_pmpit.la" || rm -f libmpi_pmpit.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmpi_mpit_common.la " || rm -f libmpi_mpit_common.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' Making clean in mpi/fortran/base/ make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/base' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libmpi_fortran_base.la" || rm -f libmpi_fortran_base.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/base' Making clean in mca/common make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common' Making clean in mca/allocator make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_allocator.la" || rm -f libmca_allocator.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator' Making clean in mca/bcol make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_bcol.la" || rm -f libmca_bcol.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol' Making clean in mca/bml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_bml.la" || rm -f libmca_bml.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml' Making clean in mca/btl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_btl.la" || rm -f libmca_btl.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl' Making clean in mca/coll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_coll.la" || rm -f libmca_coll.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll' Making clean in mca/crcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/crcp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_crcp.la" || rm -f libmca_crcp.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/crcp' Making clean in mca/dpm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_dpm.la" || rm -f libmca_dpm.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm' Making clean in mca/fbtl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_fbtl.la" || rm -f libmca_fbtl.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl' Making clean in mca/fcoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_fcoll.la" || rm -f libmca_fcoll.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll' Making clean in mca/fs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_fs.la" || rm -f libmca_fs.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs' Making clean in mca/io make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_io.la" || rm -f libmca_io.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io' Making clean in mca/mpool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_mpool.la" || rm -f libmca_mpool.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool' Making clean in mca/mtl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mtl' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_mtl.la" || rm -f libmca_mtl.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mtl' Making clean in mca/op make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/op' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_op.la" || rm -f libmca_op.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/op' Making clean in mca/osc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_osc.la" || rm -f libmca_osc.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc' Making clean in mca/pml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_pml.la" || rm -f libmca_pml.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml' Making clean in mca/pubsub make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_pubsub.la" || rm -f libmca_pubsub.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub' Making clean in mca/rcache make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_rcache.la" || rm -f libmca_rcache.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache' Making clean in mca/rte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_rte.la" || rm -f libmca_rte.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte' Making clean in mca/sbgp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_sbgp.la" || rm -f libmca_sbgp.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp' Making clean in mca/sharedfp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_sharedfp.la" || rm -f libmca_sharedfp.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp' Making clean in mca/topo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_topo.la" || rm -f libmca_topo.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo' Making clean in mca/vprotocol make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_vprotocol.la" || rm -f libmca_vprotocol.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol' Making clean in mca/common/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/sm' test -z "*~ .#*" || rm -f *~ .#* test -z "" || rm -f rm -rf .libs _libs if test -z ""; then \ rm -f "libmca_common_sm.la"; \ fi test -z "libmca_common_sm_noinst.la" || rm -f libmca_common_sm_noinst.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/sm' Making clean in mca/common/verbs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/verbs' test -z "*~ .#*" || rm -f *~ .#* test -z "" || rm -f rm -rf .libs _libs if test -z ""; then \ rm -f "libmca_common_verbs.la"; \ fi test -z "libmca_common_verbs_noinst.la" || rm -f libmca_common_verbs_noinst.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/verbs' Making clean in mca/allocator/bucket make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/bucket' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_allocator_bucket.la" || rm -f libmca_allocator_bucket.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/bucket' Making clean in mca/allocator/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/basic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_allocator_basic.la" || rm -f libmca_allocator_basic.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/basic' Making clean in mca/bcol/ptpcoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/ptpcoll' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_bcol_ptpcoll.la" || rm -f libmca_bcol_ptpcoll.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/ptpcoll' Making clean in mca/bcol/basesmuma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/basesmuma' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_bcol_basesmuma.la" || rm -f libmca_bcol_basesmuma.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/basesmuma' Making clean in mca/bml/r2 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml/r2' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_bml_r2.la" || rm -f libmca_bml_r2.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml/r2' Making clean in mca/btl/self make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/self' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_btl_self.la" || rm -f libmca_btl_self.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/self' Making clean in mca/btl/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/sm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_btl_sm.la" || rm -f libmca_btl_sm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/sm' Making clean in mca/btl/tcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/tcp' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_btl_tcp.la" || rm -f libmca_btl_tcp.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/tcp' Making clean in mca/btl/openib make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/openib' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf connect/.libs connect/_libs test -z "" || rm -f test -z "libmca_btl_openib.la" || rm -f libmca_btl_openib.la rm -f ./so_locations rm -f *.o rm -f connect/*.o rm -f connect/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/openib' Making clean in mca/btl/vader make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/vader' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_btl_vader.la" || rm -f libmca_btl_vader.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/vader' Making clean in mca/coll/tuned make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/tuned' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_coll_tuned.la" || rm -f libmca_coll_tuned.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/tuned' Making clean in mca/coll/libnbc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/libnbc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf libdict/.libs libdict/_libs test -z "" || rm -f test -z "libmca_coll_libnbc.la" || rm -f libmca_coll_libnbc.la rm -f ./so_locations rm -f *.o rm -f libdict/*.o rm -f libdict/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/libnbc' Making clean in mca/coll/self make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/self' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_coll_self.la" || rm -f libmca_coll_self.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/self' Making clean in mca/coll/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/sm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_coll_sm.la" || rm -f libmca_coll_sm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/sm' Making clean in mca/coll/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/basic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_coll_basic.la" || rm -f libmca_coll_basic.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/basic' Making clean in mca/coll/inter make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/inter' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_coll_inter.la" || rm -f libmca_coll_inter.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/inter' Making clean in mca/coll/hierarch make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/hierarch' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_coll_hierarch.la" || rm -f libmca_coll_hierarch.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/hierarch' Making clean in mca/coll/ml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/ml' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_coll_ml.la" || rm -f libmca_coll_ml.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/ml' Making clean in mca/dpm/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm/orte' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_dpm_orte.la" || rm -f libmca_dpm_orte.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm/orte' Making clean in mca/fbtl/posix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl/posix' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_fbtl_posix.la" || rm -f libmca_fbtl_posix.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl/posix' Making clean in mca/fcoll/individual make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/individual' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_fcoll_individual.la" || rm -f libmca_fcoll_individual.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/individual' Making clean in mca/fcoll/dynamic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/dynamic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_fcoll_dynamic.la" || rm -f libmca_fcoll_dynamic.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/dynamic' Making clean in mca/fcoll/ylib make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/ylib' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_fcoll_ylib.la" || rm -f libmca_fcoll_ylib.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/ylib' Making clean in mca/fcoll/static make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/static' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_fcoll_static.la" || rm -f libmca_fcoll_static.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/static' Making clean in mca/fcoll/two_phase make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/two_phase' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_fcoll_two_phase.la" || rm -f libmca_fcoll_two_phase.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/two_phase' Making clean in mca/fs/ufs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs/ufs' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_fs_ufs.la" || rm -f libmca_fs_ufs.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs/ufs' Making clean in mca/io/ompio make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/ompio' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_io_ompio.la" || rm -f libmca_io_ompio.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/ompio' Making clean in mca/io/romio make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' Making clean in romio make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' rm -rf .libs _libs rm -rf adio/ad_bg/.libs adio/ad_bg/_libs rm -rf adio/ad_bgl/.libs adio/ad_bgl/_libs rm -rf adio/ad_bglockless/.libs adio/ad_bglockless/_libs rm -rf adio/ad_gridftp/.libs adio/ad_gridftp/_libs rm -rf adio/ad_hfs/.libs adio/ad_hfs/_libs rm -rf adio/ad_lustre/.libs adio/ad_lustre/_libs rm -rf adio/ad_nfs/.libs adio/ad_nfs/_libs rm -rf adio/ad_panfs/.libs adio/ad_panfs/_libs rm -rf adio/ad_pfs/.libs adio/ad_pfs/_libs rm -rf adio/ad_piofs/.libs adio/ad_piofs/_libs rm -rf adio/ad_pvfs/.libs adio/ad_pvfs/_libs rm -rf adio/ad_pvfs2/.libs adio/ad_pvfs2/_libs rm -rf adio/ad_sfs/.libs adio/ad_sfs/_libs rm -rf adio/ad_testfs/.libs adio/ad_testfs/_libs rm -rf adio/ad_ufs/.libs adio/ad_ufs/_libs rm -rf adio/ad_xfs/.libs adio/ad_xfs/_libs rm -rf adio/ad_zoidfs/.libs adio/ad_zoidfs/_libs rm -rf adio/common/.libs adio/common/_libs rm -rf mpi-io/.libs mpi-io/_libs rm -rf mpi-io/fortran/.libs mpi-io/fortran/_libs rm -rf mpi-io/glue/default/.libs mpi-io/glue/default/_libs rm -rf mpi-io/glue/mpich/.libs mpi-io/glue/mpich/_libs rm -rf mpi-io/glue/openmpi/.libs mpi-io/glue/openmpi/_libs test -z "libromio_dist.la " || rm -f libromio_dist.la rm -f ./so_locations rm -f *.o rm -f adio/ad_bg/*.o rm -f adio/ad_bg/*.lo rm -f adio/ad_bgl/*.o rm -f adio/ad_bgl/*.lo rm -f adio/ad_bglockless/*.o rm -f adio/ad_bglockless/*.lo rm -f adio/ad_gridftp/*.o rm -f adio/ad_gridftp/*.lo rm -f adio/ad_hfs/*.o rm -f adio/ad_hfs/*.lo rm -f adio/ad_lustre/*.o rm -f adio/ad_lustre/*.lo rm -f adio/ad_nfs/*.o rm -f adio/ad_nfs/*.lo rm -f adio/ad_panfs/*.o rm -f adio/ad_panfs/*.lo rm -f adio/ad_pfs/*.o rm -f adio/ad_pfs/*.lo rm -f adio/ad_piofs/*.o rm -f adio/ad_piofs/*.lo rm -f adio/ad_pvfs/*.o rm -f adio/ad_pvfs/*.lo rm -f adio/ad_pvfs2/*.o rm -f adio/ad_pvfs2/*.lo rm -f adio/ad_sfs/*.o rm -f adio/ad_sfs/*.lo rm -f adio/ad_testfs/*.o rm -f adio/ad_testfs/*.lo rm -f adio/ad_ufs/*.o rm -f adio/ad_ufs/*.lo rm -f adio/ad_xfs/*.o rm -f adio/ad_xfs/*.lo rm -f adio/ad_zoidfs/*.o rm -f adio/ad_zoidfs/*.lo rm -f adio/common/*.o rm -f adio/common/*.lo rm -f mpi-io/*.o rm -f mpi-io/*.lo rm -f mpi-io/fortran/*.o rm -f mpi-io/fortran/*.lo rm -f mpi-io/glue/default/*.o rm -f mpi-io/glue/default/*.lo rm -f mpi-io/glue/mpich/*.o rm -f mpi-io/glue/mpich/*.lo rm -f mpi-io/glue/openmpi/*.o rm -f mpi-io/glue/openmpi/*.lo rm -f *.lo make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf src/.libs src/_libs test -z "" || rm -f test -z "libmca_io_romio.la" || rm -f libmca_io_romio.la rm -f ./so_locations rm -f *.o rm -f src/*.o rm -f src/*.lo rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' Making clean in mca/mpool/grdma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/grdma' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_mpool_grdma.la" || rm -f libmca_mpool_grdma.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/grdma' Making clean in mca/mpool/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/sm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_mpool_sm.la" || rm -f libmca_mpool_sm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/sm' Making clean in mca/osc/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/sm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_osc_sm.la" || rm -f libmca_osc_sm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/sm' Making clean in mca/osc/rdma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/rdma' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_osc_rdma.la" || rm -f libmca_osc_rdma.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/rdma' Making clean in mca/pml/cm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/cm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_pml_cm.la" || rm -f libmca_pml_cm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/cm' Making clean in mca/pml/bfo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/bfo' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_pml_bfo.la" || rm -f libmca_pml_bfo.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/bfo' Making clean in mca/pml/v make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/v' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_pml_v.la" || rm -f libmca_pml_v.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/v' Making clean in mca/pml/ob1 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/ob1' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_pml_ob1.la" || rm -f libmca_pml_ob1.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/ob1' Making clean in mca/pubsub/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub/orte' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_pubsub_orte.la" || rm -f libmca_pubsub_orte.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub/orte' Making clean in mca/rcache/vma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache/vma' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_rcache_vma.la" || rm -f libmca_rcache_vma.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache/vma' Making clean in mca/rte/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte/orte' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f mpirun.1 mpiexec.1 ompi-ps.1 ompi-clean.1 ompi-top.1 ompi-server.1 test -z "libmca_rte_orte.la" || rm -f libmca_rte_orte.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte/orte' Making clean in mca/sbgp/basesmuma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmuma' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sbgp_basesmuma.la" || rm -f libmca_sbgp_basesmuma.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmuma' Making clean in mca/sbgp/basesmsocket make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmsocket' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sbgp_basesmsocket.la" || rm -f libmca_sbgp_basesmsocket.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmsocket' Making clean in mca/sbgp/p2p make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/p2p' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sbgp_p2p.la" || rm -f libmca_sbgp_p2p.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/p2p' Making clean in mca/sharedfp/individual make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/individual' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sharedfp_individual.la" || rm -f libmca_sharedfp_individual.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/individual' Making clean in mca/sharedfp/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/sm' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sharedfp_sm.la" || rm -f libmca_sharedfp_sm.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/sm' Making clean in mca/sharedfp/lockedfile make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/lockedfile' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sharedfp_lockedfile.la" || rm -f libmca_sharedfp_lockedfile.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/lockedfile' Making clean in mca/topo/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo/basic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_topo_basic.la" || rm -f libmca_topo_basic.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo/basic' Making clean in mca/vprotocol/pessimist make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol/pessimist' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_vprotocol_pessimist.la" || rm -f libmca_vprotocol_pessimist.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol/pessimist' Making clean in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' test -z "*~ .#*" || rm -f *~ .#* test -z "libmpi.la" || rm -f libmpi.la rm -f ./so_locations rm -rf .libs _libs rm -rf attribute/.libs attribute/_libs rm -rf class/.libs class/_libs rm -rf communicator/.libs communicator/_libs rm -rf errhandler/.libs errhandler/_libs rm -rf file/.libs file/_libs rm -rf group/.libs group/_libs rm -rf info/.libs info/_libs rm -rf message/.libs message/_libs rm -rf mpiext/.libs mpiext/_libs rm -rf op/.libs op/_libs rm -rf patterns/comm/.libs patterns/comm/_libs rm -rf patterns/net/.libs patterns/net/_libs rm -rf peruse/.libs peruse/_libs rm -rf proc/.libs proc/_libs rm -rf request/.libs request/_libs rm -rf runtime/.libs runtime/_libs rm -rf win/.libs win/_libs test -z "" || rm -f rm -f *.o rm -f attribute/*.o rm -f attribute/*.lo rm -f class/*.o rm -f class/*.lo rm -f communicator/*.o rm -f communicator/*.lo rm -f errhandler/*.o rm -f errhandler/*.lo rm -f file/*.o rm -f file/*.lo rm -f group/*.o rm -f group/*.lo rm -f info/*.o rm -f info/*.lo rm -f message/*.o rm -f message/*.lo rm -f mpiext/*.o rm -f mpiext/*.lo rm -f op/*.o rm -f op/*.lo rm -f patterns/comm/*.o rm -f patterns/comm/*.lo rm -f patterns/net/*.o rm -f patterns/net/*.lo rm -f peruse/*.o rm -f peruse/*.lo rm -f proc/*.o rm -f proc/*.lo rm -f request/*.o rm -f request/*.lo rm -f runtime/*.o rm -f runtime/*.lo rm -f win/*.o rm -f win/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making clean in mpi/cxx make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/cxx' test -z "*~ .#*" || rm -f *~ .#* test -z "libmpi_cxx.la " || rm -f libmpi_cxx.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/cxx' Making clean in mpi/fortran/mpif-h make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' Making clean in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h/profile' test -z "*~ .#* psizeof_f.f90" || rm -f *~ .#* psizeof_f.f90 rm -rf .libs _libs test -z "libmpi_mpifh_pmpi.la " || rm -f libmpi_mpifh_pmpi.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' test -z "sizeof_f.f90" || rm -f sizeof_f.f90 test -z "libmpi_mpifh.la" || rm -f libmpi_mpifh.la rm -f ./so_locations rm -rf .libs _libs test -z "libmpi_mpifh_sizeof.la" || rm -f libmpi_mpifh_sizeof.la rm -f ./so_locations rm -f *.o test -z "*.mod" || rm -f *.mod rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' Making clean in mpi/fortran/use-mpi-ignore-tkr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-ignore-tkr' test -z "*~ .#* mpi-ignore-tkr-sizeof.h mpi-ignore-tkr-sizeof.f90" || rm -f *~ .#* mpi-ignore-tkr-sizeof.h mpi-ignore-tkr-sizeof.f90 test -z "libmpi_usempi_ignore_tkr.la libmpi_usempi.la" || rm -f libmpi_usempi_ignore_tkr.la libmpi_usempi.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o test -z "*.mod" || rm -f *.mod rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-ignore-tkr' Making clean in mpi/fortran/use-mpi-f08 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-f08' test -z "*~ .#* sizeof_f08.h sizeof_f08.f90 profile/psizeof_f08.f90" || rm -f *~ .#* sizeof_f08.h sizeof_f08.f90 profile/psizeof_f08.f90 test -z "libmpi_usempif08.la" || rm -f libmpi_usempif08.la rm -f ./so_locations rm -rf .libs _libs rm -rf profile/.libs profile/_libs test -z "libforce_usempif08_internal_modules_to_be_built.la" || rm -f libforce_usempif08_internal_modules_to_be_built.la rm -f ./so_locations rm -f *.o rm -f profile/*.o rm -f profile/*.lo test -z "*.mod" || rm -f *.mod rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-f08' Making clean in mpi/fortran/mpiext make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpiext' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "libforce_usempi_module_to_be_built.la libforce_usempif08_module_to_be_built.la" || rm -f libforce_usempi_module_to_be_built.la libforce_usempif08_module_to_be_built.la rm -f ./so_locations rm -f *.o test -z "*.mod" || rm -f *.mod rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpiext' Making clean in contrib/libompitrace make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/contrib/libompitrace' test -z "*~ .#*" || rm -f *~ .#* test -z "libompitrace.la" || rm -f libompitrace.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/contrib/libompitrace' Making clean in tools/ompi_info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/ompi_info' rm -f ompi_info test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -rf rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/ompi_info' Making clean in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/wrappers' test -z "*~ .#* " || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/wrappers' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making clean in oshmem make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Making clean in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' Making clean in shmem/c make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' Making clean in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c/profile' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "liboshmem_c_pshmem.la" || rm -f liboshmem_c_pshmem.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "liboshmem_c.la" || rm -f liboshmem_c.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' Making clean in shmem/fortran make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' Making clean in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran/profile' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "liboshmem_fortran_pshmem.la" || rm -f liboshmem_fortran_pshmem.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "liboshmem_fortran.la" || rm -f liboshmem_fortran.la rm -f ./so_locations rm -f *.o rm -f *.lo make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' Making clean in mca/atomic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_atomic.la" || rm -f libmca_atomic.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic' Making clean in mca/memheap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_memheap.la" || rm -f libmca_memheap.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap' Making clean in mca/scoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_scoll.la" || rm -f libmca_scoll.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll' Making clean in mca/spml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_spml.la" || rm -f libmca_spml.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml' Making clean in mca/sshmem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -rf base/.libs base/_libs test -z "libmca_sshmem.la" || rm -f libmca_sshmem.la rm -f ./so_locations rm -f *.o rm -f base/*.o rm -f base/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem' Making clean in mca/atomic/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic/basic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_atomic_basic.la" || rm -f libmca_atomic_basic.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic/basic' Making clean in mca/memheap/ptmalloc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/ptmalloc' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_memheap_ptmalloc.la" || rm -f libmca_memheap_ptmalloc.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/ptmalloc' Making clean in mca/memheap/buddy make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/buddy' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_memheap_buddy.la" || rm -f libmca_memheap_buddy.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/buddy' Making clean in mca/scoll/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/basic' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_scoll_basic.la" || rm -f libmca_scoll_basic.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/basic' Making clean in mca/scoll/mpi make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/mpi' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_scoll_mpi.la" || rm -f libmca_scoll_mpi.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/mpi' Making clean in mca/spml/yoda make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml/yoda' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_spml_yoda.la" || rm -f libmca_spml_yoda.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml/yoda' Making clean in mca/sshmem/mmap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/mmap' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sshmem_mmap.la" || rm -f libmca_sshmem_mmap.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/mmap' Making clean in mca/sshmem/sysv make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/sysv' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -f test -z "libmca_sshmem_sysv.la" || rm -f libmca_sshmem_sysv.la rm -f ./so_locations rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/sysv' Making clean in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' test -z "*~ .#*" || rm -f *~ .#* test -z "liboshmem.la" || rm -f liboshmem.la rm -f ./so_locations rm -rf .libs _libs rm -rf op/.libs op/_libs rm -rf proc/.libs proc/_libs rm -rf request/.libs request/_libs rm -rf runtime/.libs runtime/_libs rm -rf util/.libs util/_libs test -z "" || rm -f rm -f *.o rm -f op/*.o rm -f op/*.lo rm -f proc/*.o rm -f proc/*.lo rm -f request/*.o rm -f request/*.lo rm -f runtime/*.o rm -f runtime/*.lo rm -f util/*.o rm -f util/*.lo rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Making clean in tools/oshmem_info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/tools/oshmem_info' rm -f oshmem_info test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs test -z "" || rm -rf rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/tools/oshmem_info' Making clean in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/tools/wrappers' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/tools/wrappers' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Making clean in test make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test' Making clean in support make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/support' test -z "libsupport.a" || rm -f libsupport.a test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/support' Making clean in asm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/asm' rm -f atomic_barrier atomic_barrier_noinline atomic_spinlock atomic_spinlock_noinline atomic_math atomic_math_noinline atomic_cmpset atomic_cmpset_noinline test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/asm' Making clean in class make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/class' rm -f ompi_rb_tree opal_bitmap opal_hash_table opal_tree opal_list opal_value_array opal_pointer_array test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f opal_bitmap_test_out.txt opal_hash_table_test_out.txt rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/class' Making clean in threads make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/threads' rm -f opal_thread opal_condition test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/threads' Making clean in datatype make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/datatype' rm -f opal_datatype_test checksum position position_noncontig ddt_test ddt_raw to_self ddt_pack test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/datatype' Making clean in util make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/util' rm -f opal_bit_ops opal_path_nfs test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f test_session_dir_out test-file opal_path_nfs.out rm -f *.o rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test/util' make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/test' make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5' test -z "*~ .#*" || rm -f *~ .#* rm -rf .libs _libs rm -f *.lo make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5' Executing: cd /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5 && /usr/bin/make -j 7 stdout: Making all in config make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/config' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/config' Making all in contrib make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/contrib' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/contrib' Making all in opal make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making all in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' /usr/bin/make all-am make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' Making all in asm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/asm' rm -f atomic-asm.S CC asm.lo ln -s "../../opal/asm/generated/atomic-amd64-linux.s" atomic-asm.S CPPAS atomic-asm.lo CCLD libasm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/asm' Making all in datatype make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/datatype' CC libdatatype_reliable_la-opal_datatype_pack.lo CC libdatatype_reliable_la-opal_datatype_unpack.lo CC opal_convertor.lo CC opal_convertor_raw.lo CC opal_copy_functions.lo CC opal_copy_functions_heterogeneous.lo CC opal_datatype_add.lo CC opal_datatype_clone.lo CC opal_datatype_copy.lo CC opal_datatype_create.lo CC opal_datatype_create_contiguous.lo CC opal_datatype_dump.lo CC opal_datatype_destroy.lo CC opal_datatype_fake_stack.lo CC opal_datatype_get_count.lo CC opal_datatype_module.lo CC opal_datatype_optimize.lo CC opal_datatype_pack.lo CC opal_datatype_position.lo CC opal_datatype_resize.lo CC opal_datatype_unpack.lo CCLD libdatatype_reliable.la CCLD libdatatype.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/datatype' Making all in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/etc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/etc' Making all in util make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' Making all in keyval make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util/keyval' CC keyval_lex.lo CCLD libopalutilkeyval.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util/keyval' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' CC fd.lo CC alfg.lo CC arch.lo CC argv.lo CC basename.lo CC cmd_line.lo CC crc.lo CC convert.lo CC daemon_init.lo CC error.lo CC few.lo CC if.lo CC keyval_parse.lo CC malloc.lo CC net.lo CC numtostr.lo CC opal_environ.lo CC opal_getcwd.lo CC opal_pty.lo CC os_dirpath.lo CC os_path.lo CC output.lo CC path.lo CC printf.lo CC qsort.lo CC show_help.lo CC show_help_lex.lo CC stacktrace.lo CC strncpy.lo CC sys_limits.lo CC uri.lo CCLD libopalutil.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' Making all in mca/base make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/base' CC mca_base_close.lo CC mca_base_cmd_line.lo CC mca_base_component_compare.lo CC mca_base_component_find.lo CC mca_base_component_repository.lo CC mca_base_components_open.lo CC mca_base_components_close.lo CC mca_base_components_select.lo CC mca_base_list.lo CC mca_base_open.lo CC mca_base_param.lo CC mca_base_var.lo CC mca_base_pvar.lo CC mca_base_var_enum.lo CC mca_base_var_group.lo CC mca_base_parse_paramfile.lo CC mca_base_components_register.lo CC mca_base_framework.lo CCLD libmca_base.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/base' Making all in mca/common make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/common' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/common' Making all in mca/backtrace make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace' CC base/backtrace_component.lo CCLD libmca_backtrace.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace' Making all in mca/compress make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress' CC base/compress_base_open.lo CC base/compress_base_close.lo CC base/compress_base_select.lo CC base/compress_base_fns.lo CCLD libmca_compress.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress' Making all in mca/crs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs' CC base/crs_base_open.lo CC base/crs_base_close.lo CC base/crs_base_select.lo CC base/crs_base_fns.lo CCLD libmca_crs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs' Making all in mca/db make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db' CC base/db_base_frame.lo CC base/db_base_select.lo CC base/db_base_fns.lo CCLD libmca_db.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db' Making all in mca/dl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl' CC base/dl_base_open.lo CC base/dl_base_close.lo CC base/dl_base_select.lo CC base/dl_base_fns.lo CCLD libmca_dl.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl' Making all in mca/event make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event' CC base/event_base_frame.lo CCLD libmca_event.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event' Making all in mca/hwloc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc' CC base/hwloc_base_frame.lo CC base/hwloc_base_dt.lo CC base/hwloc_base_util.lo CC base/hwloc_base_maffinity.lo CCLD libmca_hwloc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc' Making all in mca/if make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if' CC base/if_base_components.lo CCLD libmca_if.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if' Making all in mca/installdirs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs' CC base/installdirs_base_components.lo CC base/installdirs_base_expand.lo CCLD libmca_installdirs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs' Making all in mca/memchecker make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memchecker' CC base/memchecker_base_open.lo CC base/memchecker_base_select.lo CC base/memchecker_base_wrappers.lo CCLD libmca_memchecker.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memchecker' Making all in mca/memcpy make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memcpy' CC base/memcpy_base_open.lo CCLD libmca_memcpy.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memcpy' Making all in mca/memory make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memory' CC base/memory_base_open.lo CC base/memory_base_empty.lo CCLD libmca_memory.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memory' Making all in mca/pstat make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat' CC base/pstat_base_select.lo CC base/pstat_base_open.lo CCLD libmca_pstat.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat' Making all in mca/sec make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec' CC base/sec_base_frame.lo CC base/sec_base_select.lo CCLD libmca_sec.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec' Making all in mca/shmem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem' CC base/shmem_base_close.lo CC base/shmem_base_select.lo CC base/shmem_base_open.lo CC base/shmem_base_wrappers.lo CCLD libmca_shmem.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem' Making all in mca/timer make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer' CC base/timer_base_open.lo CCLD libmca_timer.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer' Making all in mca/backtrace/execinfo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace/execinfo' CC backtrace_execinfo.lo CC backtrace_execinfo_component.lo CCLD libmca_backtrace_execinfo.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace/execinfo' Making all in mca/compress/gzip make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/gzip' CC compress_gzip_component.lo CC compress_gzip_module.lo CCLD libmca_compress_gzip.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/gzip' Making all in mca/compress/bzip make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/bzip' CC compress_bzip_component.lo CC compress_bzip_module.lo CCLD libmca_compress_bzip.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/bzip' Making all in mca/crs/none make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs/none' CC crs_none_component.lo CC crs_none_module.lo CCLD libmca_crs_none.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs/none' Making all in mca/db/print make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/print' CC libmca_db_print_la-db_print_component.lo CC libmca_db_print_la-db_print.lo CCLD libmca_db_print.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/print' Making all in mca/db/hash make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/hash' CC db_hash_component.lo CC db_hash.lo CCLD libmca_db_hash.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/hash' Making all in mca/dl/dlopen make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl/dlopen' CC dl_dlopen_component.lo CC dl_dlopen_module.lo CCLD libmca_dl_dlopen.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl/dlopen' Making all in mca/event/libevent2021 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' Making all in libevent make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' /usr/bin/make all-recursive make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' Making all in . make[5]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT event.lo -MD -MP -MF .deps/event.Tpo -c -o event.lo event.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evthread.lo -MD -MP -MF .deps/evthread.Tpo -c -o evthread.lo evthread.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evmap.lo -MD -MP -MF .deps/evmap.Tpo -c -o evmap.lo evmap.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT log.lo -MD -MP -MF .deps/log.Tpo -c -o log.lo log.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evutil.lo -MD -MP -MF .deps/evutil.Tpo -c -o evutil.lo evutil.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evutil_rand.lo -MD -MP -MF .deps/evutil_rand.Tpo -c -o evutil_rand.lo evutil_rand.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT strlcpy.lo -MD -MP -MF .deps/strlcpy.Tpo -c -o strlcpy.lo strlcpy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT strlcpy.lo -MD -MP -MF .deps/strlcpy.Tpo -c strlcpy.c -o strlcpy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evthread.lo -MD -MP -MF .deps/evthread.Tpo -c evthread.c -o evthread.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT event.lo -MD -MP -MF .deps/event.Tpo -c event.c -o event.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evmap.lo -MD -MP -MF .deps/evmap.Tpo -c evmap.c -o evmap.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT log.lo -MD -MP -MF .deps/log.Tpo -c log.c -o log.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evutil.lo -MD -MP -MF .deps/evutil.Tpo -c evutil.c -o evutil.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evutil_rand.lo -MD -MP -MF .deps/evutil_rand.Tpo -c evutil_rand.c -o evutil_rand.o mv -f .deps/strlcpy.Tpo .deps/strlcpy.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT select.lo -MD -MP -MF .deps/select.Tpo -c -o select.lo select.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT select.lo -MD -MP -MF .deps/select.Tpo -c select.c -o select.o mv -f .deps/log.Tpo .deps/log.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT poll.lo -MD -MP -MF .deps/poll.Tpo -c -o poll.lo poll.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT poll.lo -MD -MP -MF .deps/poll.Tpo -c poll.c -o poll.o mv -f .deps/evthread.Tpo .deps/evthread.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT epoll.lo -MD -MP -MF .deps/epoll.Tpo -c -o epoll.lo epoll.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT epoll.lo -MD -MP -MF .deps/epoll.Tpo -c epoll.c -o epoll.o mv -f .deps/evutil_rand.Tpo .deps/evutil_rand.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT signal.lo -MD -MP -MF .deps/signal.Tpo -c -o signal.lo signal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT signal.lo -MD -MP -MF .deps/signal.Tpo -c signal.c -o signal.o mv -f .deps/select.Tpo .deps/select.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evthread_pthread.lo -MD -MP -MF .deps/evthread_pthread.Tpo -c -o evthread_pthread.lo evthread_pthread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evthread_pthread.lo -MD -MP -MF .deps/evthread_pthread.Tpo -c evthread_pthread.c -o evthread_pthread.o mv -f .deps/evmap.Tpo .deps/evmap.Plo mv -f .deps/poll.Tpo .deps/poll.Plo mv -f .deps/evthread_pthread.Tpo .deps/evthread_pthread.Plo mv -f .deps/epoll.Tpo .deps/epoll.Plo mv -f .deps/signal.Tpo .deps/signal.Plo mv -f .deps/evutil.Tpo .deps/evutil.Plo mv -f .deps/event.Tpo .deps/event.Plo /bin/bash ./libtool --tag=CC --mode=link gcc -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -o libevent.la event.lo evthread.lo evmap.lo log.lo evutil.lo evutil_rand.lo strlcpy.lo select.lo poll.lo epoll.lo signal.lo evthread_pthread.lo libtool: link: /usr/bin/ar cru .libs/libevent.a event.o evthread.o evmap.o log.o evutil.o evutil_rand.o strlcpy.o select.o poll.o epoll.o signal.o evthread_pthread.o libtool: link: ranlib .libs/libevent.a libtool: link: ( cd ".libs" && rm -f "libevent.la" && ln -s "../libevent.la" "libevent.la" ) make[5]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' Making all in include make[5]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent/include' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent/include' make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' CC libevent2021_component.lo CC libevent2021_module.lo CCLD libmca_event_libevent2021.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' Making all in mca/hwloc/hwloc191 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' Making all in hwloc make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' Making all in src make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/src' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-linux.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/src' Making all in include make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/include' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/include' make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' CC hwloc191_component.lo CCLD libmca_hwloc_hwloc191.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' Making all in mca/if/posix_ipv4 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/posix_ipv4' CC if_posix.lo CCLD libmca_if_posix_ipv4.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/posix_ipv4' Making all in mca/if/linux_ipv6 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/linux_ipv6' CC if_linux_ipv6.lo CCLD libmca_if_linux_ipv6.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/linux_ipv6' Making all in mca/installdirs/env make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/env' CC opal_installdirs_env.lo CCLD libmca_installdirs_env.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/env' Making all in mca/installdirs/config make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/config' CC opal_installdirs_config.lo CCLD libmca_installdirs_config.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/config' Making all in mca/pstat/linux make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat/linux' CC pstat_linux_component.lo CC pstat_linux_module.lo CCLD libmca_pstat_linux.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat/linux' Making all in mca/sec/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec/basic' CC sec_basic_component.lo CC sec_basic.lo CCLD libmca_sec_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec/basic' Making all in mca/shmem/mmap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/mmap' CC shmem_mmap_component.lo CC shmem_mmap_module.lo CCLD libmca_shmem_mmap.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/mmap' Making all in mca/shmem/posix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/posix' CC shmem_posix_common_utils.lo CC shmem_posix_component.lo CC shmem_posix_module.lo CCLD libmca_shmem_posix.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/posix' Making all in mca/shmem/sysv make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/sysv' CC shmem_sysv_component.lo CC shmem_sysv_module.lo CCLD libmca_shmem_sysv.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/sysv' Making all in mca/timer/linux make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer/linux' CC timer_linux_component.lo CCLD libmca_timer_linux.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer/linux' Making all in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' CC class/opal_bitmap.lo CC class/opal_free_list.lo CC class/opal_hash_table.lo CC class/opal_hotel.lo CC class/opal_tree.lo CC class/opal_list.lo CC class/opal_object.lo CC class/opal_graph.lo CC class/opal_atomic_lifo.lo CC class/opal_pointer_array.lo CC class/opal_value_array.lo CC class/opal_ring_buffer.lo CC memoryhooks/memory.lo CC runtime/opal_progress.lo CC runtime/opal_finalize.lo CC runtime/opal_init.lo CC runtime/opal_params.lo CC runtime/opal_cr.lo CC runtime/opal_info_support.lo CC threads/condition.lo CC threads/mutex.lo CC threads/thread.lo CC threads/tsd.lo CC dss/dss_internal_functions.lo CC dss/dss_compare.lo CC dss/dss_copy.lo CC dss/dss_dump.lo CC dss/dss_load_unload.lo CC dss/dss_lookup.lo CC dss/dss_pack.lo CC dss/dss_peek.lo CC dss/dss_print.lo CC dss/dss_register.lo CC dss/dss_unpack.lo CC dss/dss_open_close.lo CCLD libopen-pal.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making all in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/tools/wrappers' CC opal_wrapper.o CCLD opal_wrapper make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/tools/wrappers' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making all in orte make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making all in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' /usr/bin/make all-am make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' Making all in mca/dfs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs' CC base/dfs_base_select.lo CC base/dfs_base_frame.lo CCLD libmca_dfs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs' Making all in mca/errmgr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr' CC base/errmgr_base_select.lo CC base/errmgr_base_frame.lo CC base/errmgr_base_fns.lo CC base/errmgr_base_tool.lo CCLD libmca_errmgr.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr' Making all in mca/ess make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess' CC base/ess_base_frame.lo CC base/ess_base_select.lo CC base/ess_base_get.lo CC base/ess_base_put.lo CC base/ess_base_std_tool.lo CC base/ess_base_std_app.lo CC base/ess_base_std_orted.lo CC base/ess_base_std_prolog.lo CC base/ess_base_fns.lo CCLD libmca_ess.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess' Making all in mca/filem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem' CC base/filem_base_frame.lo CC base/filem_base_select.lo CC base/filem_base_receive.lo CC base/filem_base_fns.lo CCLD libmca_filem.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem' Making all in mca/grpcomm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm' CC base/grpcomm_base_select.lo CC base/grpcomm_base_frame.lo CC base/grpcomm_base_modex.lo CC base/grpcomm_base_receive.lo CC base/grpcomm_base_xcast.lo CC base/grpcomm_base_rollup.lo CCLD libmca_grpcomm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm' Making all in mca/iof make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof' CC base/iof_base_frame.lo CC base/iof_base_select.lo CC base/iof_base_output.lo CC base/iof_base_setup.lo CCLD libmca_iof.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof' Making all in mca/odls make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls' CC base/odls_base_frame.lo CC base/odls_base_select.lo CC base/odls_base_default_fns.lo CCLD libmca_odls.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls' Making all in mca/oob make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob' CC base/oob_base_stubs.lo CC base/oob_base_frame.lo CC base/oob_base_select.lo CCLD libmca_oob.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob' Making all in mca/plm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm' CC base/plm_base_frame.lo CC base/plm_base_select.lo CC base/plm_base_receive.lo CC base/plm_base_launch_support.lo CC base/plm_base_jobid.lo CC base/plm_base_proxy.lo CC base/plm_base_orted_cmds.lo CCLD libmca_plm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm' Making all in mca/ras make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras' CC base/ras_base_frame.lo CC base/ras_base_select.lo CC base/ras_base_allocate.lo CC base/ras_base_node.lo CCLD libmca_ras.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras' Making all in mca/rmaps make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps' CC base/rmaps_base_frame.lo CC base/rmaps_base_select.lo CC base/rmaps_base_map_job.lo CC base/rmaps_base_support_fns.lo CC base/rmaps_base_ranking.lo CC base/rmaps_base_print_fns.lo CC base/rmaps_base_binding.lo CCLD libmca_rmaps.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps' Making all in mca/rml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml' CC base/rml_base_frame.lo CC base/rml_base_receive.lo CC base/rml_base_contact.lo CC base/rml_base_msg_handlers.lo CCLD libmca_rml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml' Making all in mca/routed make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed' CC base/routed_base_frame.lo CC base/routed_base_fns.lo CCLD libmca_routed.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed' Making all in mca/sensor make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sensor' CC base/sensor_base_frame.lo CC base/sensor_base_select.lo CC base/sensor_base_fns.lo CCLD libmca_sensor.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sensor' Making all in mca/snapc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/snapc' CC base/snapc_base_frame.lo CC base/snapc_base_select.lo CC base/snapc_base_fns.lo CCLD libmca_snapc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/snapc' Making all in mca/sstore make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sstore' CC base/sstore_base_frame.lo CC base/sstore_base_select.lo CC base/sstore_base_fns.lo CCLD libmca_sstore.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sstore' Making all in mca/state make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state' CC base/state_base_frame.lo CC base/state_base_select.lo CC base/state_base_fns.lo CCLD libmca_state.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state' Making all in mca/dfs/test make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/test' CC dfs_test_component.lo CC dfs_test.lo CCLD libmca_dfs_test.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/test' Making all in mca/dfs/app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/app' CC dfs_app_component.lo CC dfs_app.lo CCLD libmca_dfs_app.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/app' Making all in mca/dfs/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/orted' CC dfs_orted_component.lo CC dfs_orted.lo CCLD libmca_dfs_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/orted' Making all in mca/errmgr/default_tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_tool' CC errmgr_default_tool_component.lo CC errmgr_default_tool.lo CCLD libmca_errmgr_default_tool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_tool' Making all in mca/errmgr/default_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_hnp' CC errmgr_default_hnp_component.lo CC errmgr_default_hnp.lo CCLD libmca_errmgr_default_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_hnp' Making all in mca/errmgr/default_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_orted' CC errmgr_default_orted_component.lo CC errmgr_default_orted.lo CCLD libmca_errmgr_default_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_orted' Making all in mca/errmgr/default_app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_app' CC errmgr_default_app_component.lo CC errmgr_default_app.lo CCLD libmca_errmgr_default_app.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_app' Making all in mca/ess/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/tool' CC ess_tool_component.lo CC ess_tool_module.lo CCLD libmca_ess_tool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/tool' Making all in mca/ess/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/hnp' CC ess_hnp_component.lo CC ess_hnp_module.lo CCLD libmca_ess_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/hnp' Making all in mca/ess/singleton make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/singleton' CC ess_singleton_component.lo CC ess_singleton_module.lo CCLD libmca_ess_singleton.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/singleton' Making all in mca/ess/env make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/env' CC ess_env_component.lo CC ess_env_module.lo CCLD libmca_ess_env.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/env' Making all in mca/ess/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/slurm' CC ess_slurm_component.lo CC ess_slurm_module.lo CCLD libmca_ess_slurm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/slurm' Making all in mca/filem/raw make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem/raw' CC filem_raw_component.lo CC filem_raw_module.lo CCLD libmca_filem_raw.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem/raw' Making all in mca/grpcomm/bad make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm/bad' CC grpcomm_bad_module.lo CC grpcomm_bad_component.lo CCLD libmca_grpcomm_bad.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm/bad' Making all in mca/iof/mr_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_orted' CC iof_mrorted.lo CC iof_mrorted_component.lo CC iof_mrorted_read.lo CC iof_mrorted_receive.lo CCLD libmca_iof_mr_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_orted' Making all in mca/iof/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/tool' CC iof_tool.lo CC iof_tool_component.lo CC iof_tool_receive.lo CCLD libmca_iof_tool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/tool' Making all in mca/iof/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/hnp' CC iof_hnp.lo CC iof_hnp_component.lo CC iof_hnp_read.lo CC iof_hnp_send.lo CC iof_hnp_receive.lo CCLD libmca_iof_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/hnp' Making all in mca/iof/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/orted' CC iof_orted.lo CC iof_orted_component.lo CC iof_orted_read.lo CC iof_orted_receive.lo CCLD libmca_iof_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/orted' Making all in mca/iof/mr_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_hnp' CC iof_mrhnp.lo CC iof_mrhnp_component.lo CC iof_mrhnp_read.lo CC iof_mrhnp_receive.lo CCLD libmca_iof_mr_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_hnp' Making all in mca/odls/default make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls/default' CC odls_default_component.lo CC odls_default_module.lo CCLD libmca_odls_default.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls/default' Making all in mca/oob/tcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob/tcp' CC oob_tcp_component.lo CC oob_tcp.lo CC oob_tcp_listener.lo CC oob_tcp_common.lo CC oob_tcp_connection.lo CC oob_tcp_sendrecv.lo CCLD libmca_oob_tcp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob/tcp' Making all in mca/plm/isolated make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/isolated' CC plm_isolated_component.lo CC plm_isolated.lo CCLD libmca_plm_isolated.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/isolated' Making all in mca/plm/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/slurm' CC plm_slurm_component.lo CC plm_slurm_module.lo CCLD libmca_plm_slurm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/slurm' Making all in mca/plm/rsh make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/rsh' CC plm_rsh_component.lo CC plm_rsh_module.lo CCLD libmca_plm_rsh.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/rsh' Making all in mca/ras/simulator make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/simulator' CC ras_sim_component.lo CC ras_sim_module.lo CCLD libmca_ras_simulator.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/simulator' Making all in mca/ras/loadleveler make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/loadleveler' CC ras_loadleveler_component.lo CC ras_loadleveler_module.lo CCLD libmca_ras_loadleveler.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/loadleveler' Making all in mca/ras/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/slurm' CC ras_slurm_component.lo CC ras_slurm_module.lo CCLD libmca_ras_slurm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/slurm' Making all in mca/rmaps/resilient make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/resilient' CC rmaps_resilient.lo CC rmaps_resilient_component.lo CCLD libmca_rmaps_resilient.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/resilient' Making all in mca/rmaps/seq make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/seq' CC rmaps_seq.lo CC rmaps_seq_component.lo CCLD libmca_rmaps_seq.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/seq' Making all in mca/rmaps/round_robin make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/round_robin' CC rmaps_rr.lo CC rmaps_rr_component.lo CC rmaps_rr_mappers.lo CCLD libmca_rmaps_round_robin.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/round_robin' Making all in mca/rmaps/ppr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/ppr' CC rmaps_ppr.lo CC rmaps_ppr_component.lo CCLD libmca_rmaps_ppr.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/ppr' Making all in mca/rmaps/staged make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/staged' CC rmaps_staged.lo CC rmaps_staged_component.lo CCLD libmca_rmaps_staged.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/staged' Making all in mca/rmaps/mindist make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/mindist' CC rmaps_mindist_module.lo CC rmaps_mindist_component.lo CCLD libmca_rmaps_mindist.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/mindist' Making all in mca/rmaps/lama make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/lama' CC rmaps_lama_module.lo CC rmaps_lama_max_tree.lo CC rmaps_lama_params.lo CC rmaps_lama_component.lo CCLD libmca_rmaps_lama.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/lama' Making all in mca/rmaps/rank_file make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/rank_file' CC rmaps_rank_file.lo CC rmaps_rank_file_component.lo CC rmaps_rank_file_lex.lo CCLD libmca_rmaps_rank_file.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/rank_file' Making all in mca/rml/oob make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml/oob' CC rml_oob_component.lo CC rml_oob_contact.lo CC rml_oob_exception.lo CC rml_oob_ping.lo CC rml_oob_recv.lo CC rml_oob_send.lo CCLD libmca_rml_oob.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml/oob' Making all in mca/routed/direct make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/direct' CC routed_direct.lo CC routed_direct_component.lo CCLD libmca_routed_direct.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/direct' Making all in mca/routed/radix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/radix' CC routed_radix.lo CC routed_radix_component.lo CCLD libmca_routed_radix.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/radix' Making all in mca/routed/debruijn make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/debruijn' CC routed_debruijn.lo CC routed_debruijn_component.lo CCLD libmca_routed_debruijn.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/debruijn' Making all in mca/routed/binomial make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/binomial' CC routed_binomial.lo CC routed_binomial_component.lo CCLD libmca_routed_binomial.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/binomial' Making all in mca/state/app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/app' CC state_app_component.lo CC state_app.lo CCLD libmca_state_app.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/app' Making all in mca/state/staged_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_orted' CC state_staged_orted_component.lo CC state_staged_orted.lo CCLD libmca_state_staged_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_orted' Making all in mca/state/staged_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_hnp' CC state_staged_hnp_component.lo CC state_staged_hnp.lo CCLD libmca_state_staged_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_hnp' Making all in mca/state/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/tool' CC state_tool_component.lo CC state_tool.lo CCLD libmca_state_tool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/tool' Making all in mca/state/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/hnp' CC state_hnp_component.lo CC state_hnp.lo CCLD libmca_state_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/hnp' Making all in mca/state/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/orted' CC state_orted_component.lo CC state_orted.lo CCLD libmca_state_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/orted' Making all in mca/state/novm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/novm' CC state_novm_component.lo CC state_novm.lo CCLD libmca_state_novm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/novm' Making all in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/etc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/etc' Making all in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' CC runtime/orte_finalize.lo CC runtime/orte_init.lo CC runtime/orte_locks.lo CC runtime/orte_globals.lo CC runtime/orte_quit.lo CC runtime/data_type_support/orte_dt_compare_fns.lo CC runtime/data_type_support/orte_dt_copy_fns.lo CC runtime/data_type_support/orte_dt_print_fns.lo CC runtime/data_type_support/orte_dt_packing_fns.lo CC runtime/data_type_support/orte_dt_unpacking_fns.lo CC runtime/orte_mca_params.lo CC runtime/orte_wait.lo CC runtime/orte_cr.lo CC runtime/orte_data_server.lo CC runtime/orte_info_support.lo CC util/error_strings.lo CC util/name_fns.lo CC util/proc_info.lo CC util/session_dir.lo CC util/show_help.lo CC util/context_fns.lo CC util/parse_options.lo CC util/pre_condition_transports.lo CC util/hnp_contact.lo CC util/hostfile/hostfile_lex.lo CC util/hostfile/hostfile.lo CC util/comm/comm.lo CC util/dash_host/dash_host.lo CC util/nidmap.lo CC util/regex.lo CC orted/orted_main.lo CC orted/orted_comm.lo CCLD libopen-rte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making all in tools/orte-checkpoint make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-checkpoint' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-checkpoint' Making all in tools/orte-clean make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-clean' CC orte-clean.o CCLD orte-clean make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-clean' Making all in tools/orte-ps make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-ps' CC orte-ps.o CCLD orte-ps make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-ps' Making all in tools/orte-restart make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-restart' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-restart' Making all in tools/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orted' CC orted.o CCLD orted make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orted' Making all in tools/orterun make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orterun' CC main.o CC orterun.o CCLD orterun make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orterun' Making all in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/wrappers' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/wrappers' Making all in tools/orte-top make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-top' CC orte-top.o CCLD orte-top make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-top' Making all in tools/orte-info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-info' CC orte-info.o CC output.o CC param.o CC components.o CC version.o CCLD orte-info make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-info' Making all in tools/orte-migrate make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-migrate' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-migrate' Making all in tools/orte-server make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-server' CC orte-server.o CCLD orte-server make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-server' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making all in ompi make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making all in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' /usr/bin/make all-am make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' ../../ompi/mpi/fortran/base/gen-mpi-sizeof.pl \ --header=mpif-sizeof.h --ierror=mandatory \ --maxrank=7 \ --generate=1 \ --real16=1 \ --complex32=1 make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' Making all in datatype make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/datatype' CC ompi_datatype_args.lo CC ompi_datatype_create.lo CC ompi_datatype_create_contiguous.lo CC ompi_datatype_create_indexed.lo CC ompi_datatype_create_struct.lo CC ompi_datatype_create_vector.lo CC ompi_datatype_create_darray.lo CC ompi_datatype_create_subarray.lo CC ompi_datatype_external32.lo CC ompi_datatype_match_size.lo CC ompi_datatype_module.lo CC ompi_datatype_sndrcv.lo CC ompi_datatype_get_elements.lo CCLD libdatatype.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/datatype' Making all in debuggers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/debuggers' CC libdebuggers_la-ompi_debuggers.lo CC ompi_debugger_canary.lo CC libompi_dbg_msgq_la-ompi_msgq_dll.lo CC libompi_dbg_msgq_la-ompi_common_dll.lo CCLD libompi_dbg_msgq.la CCLD libdebuggers.la CCLD libompi_debugger_canary.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/debuggers' Making all in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/etc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/etc' Making all in mpi/c make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c/profile' CC pabort.lo CC padd_error_class.lo CC padd_error_code.lo CC padd_error_string.lo CC paddress.lo CC pallgather.lo CC piallgather.lo CC pallgatherv.lo CC piallgatherv.lo CC palloc_mem.lo CC pallreduce.lo CC piallreduce.lo CC palltoall.lo CC pialltoall.lo CC palltoallv.lo CC pialltoallv.lo CC palltoallw.lo CC pialltoallw.lo CC pattr_delete.lo CC pattr_get.lo CC pattr_put.lo CC pbarrier.lo CC pibarrier.lo CC pbcast.lo CC pibcast.lo CC pbsend.lo CC pbsend_init.lo CC pbuffer_attach.lo CC pcancel.lo CC pbuffer_detach.lo CC pcart_coords.lo CC pcart_create.lo CC pcartdim_get.lo CC pcart_get.lo CC pcart_map.lo CC pcart_rank.lo CC pcart_shift.lo CC pcart_sub.lo CC pclose_port.lo CC pcomm_accept.lo CC pcomm_c2f.lo CC pcomm_call_errhandler.lo CC pcomm_compare.lo CC pcomm_connect.lo CC pcomm_create.lo CC pcomm_create_errhandler.lo CC pcomm_create_group.lo CC pcomm_create_keyval.lo CC pcomm_delete_attr.lo CC pcomm_disconnect.lo CC pcomm_dup.lo CC pcomm_dup_with_info.lo CC pcomm_idup.lo CC pcomm_f2c.lo CC pcomm_free.lo CC pcomm_free_keyval.lo CC pcomm_get_attr.lo CC pcomm_get_errhandler.lo CC pcomm_get_info.lo CC pcomm_get_name.lo CC pcomm_get_parent.lo CC pcomm_group.lo CC pcomm_join.lo CC pcomm_rank.lo CC pcomm_remote_group.lo CC pcomm_remote_size.lo CC pcomm_set_attr.lo CC pcomm_set_info.lo CC pdist_graph_create.lo CC pdist_graph_create_adjacent.lo CC pdist_graph_neighbors.lo CC pdist_graph_neighbors_count.lo CC pcomm_set_errhandler.lo CC pcomm_set_name.lo CC pcomm_size.lo CC pcomm_spawn.lo CC pcomm_spawn_multiple.lo CC pcomm_split.lo CC pcomm_split_type.lo CC pcomm_test_inter.lo CC pcompare_and_swap.lo CC pdims_create.lo CC perrhandler_c2f.lo CC perrhandler_create.lo CC perrhandler_f2c.lo CC perrhandler_free.lo CC perrhandler_get.lo CC perrhandler_set.lo CC perror_class.lo CC perror_string.lo CC pexscan.lo CC pfetch_and_op.lo CC piexscan.lo CC pfinalize.lo CC pfinalized.lo CC pfree_mem.lo CC pgather.lo CC pigather.lo CC pgatherv.lo CC pigatherv.lo CC pget_address.lo CC pget_count.lo CC pget_elements.lo CC pget_elements_x.lo CC pget_accumulate.lo CC pget_library_version.lo CC pget_processor_name.lo CC pget_version.lo CC pgraph_create.lo CC pgraph_get.lo CC pgraph_map.lo CC pgraph_neighbors_count.lo CC pgraph_neighbors.lo CC pgraphdims_get.lo CC pgrequest_complete.lo CC pgrequest_start.lo CC pgroup_c2f.lo CC pgroup_compare.lo CC pgroup_difference.lo CC pgroup_excl.lo CC pgroup_f2c.lo CC pgroup_free.lo CC pgroup_incl.lo CC pgroup_intersection.lo CC pgroup_range_excl.lo CC pgroup_range_incl.lo CC pgroup_rank.lo CC pgroup_size.lo CC pgroup_translate_ranks.lo CC pgroup_union.lo CC pibsend.lo CC pimprobe.lo CC pimrecv.lo CC pinfo_c2f.lo CC pinfo_create.lo CC pinfo_delete.lo CC pinfo_dup.lo CC pinfo_f2c.lo CC pinfo_free.lo CC pinfo_get.lo CC pinfo_get_nkeys.lo CC pinfo_get_nthkey.lo CC pinfo_get_valuelen.lo CC pinfo_set.lo CC pinit.lo CC pinit_thread.lo CC pinitialized.lo CC pintercomm_create.lo CC pintercomm_merge.lo CC piprobe.lo CC pirecv.lo CC pirsend.lo CC pis_thread_main.lo CC pisend.lo CC pissend.lo CC pkeyval_create.lo CC pkeyval_free.lo CC plookup_name.lo CC pmessage_f2c.lo CC pmessage_c2f.lo CC pmprobe.lo CC pmrecv.lo CC pneighbor_allgather.lo CC pineighbor_allgather.lo CC pneighbor_allgatherv.lo CC pineighbor_allgatherv.lo CC pneighbor_alltoall.lo CC pineighbor_alltoall.lo CC pneighbor_alltoallv.lo CC pineighbor_alltoallv.lo CC pneighbor_alltoallw.lo CC pineighbor_alltoallw.lo CC pop_c2f.lo CC pop_create.lo CC pop_commutative.lo CC pop_f2c.lo CC pop_free.lo CC popen_port.lo CC ppack_external.lo CC ppack_external_size.lo CC ppack.lo CC ppack_size.lo CC ppcontrol.lo CC pprobe.lo CC ppublish_name.lo CC pquery_thread.lo CC praccumulate.lo CC precv_init.lo CC precv.lo CC preduce.lo CC pireduce.lo CC preduce_local.lo CC preduce_scatter.lo CC pireduce_scatter.lo CC preduce_scatter_block.lo CC pireduce_scatter_block.lo CC prequest_c2f.lo CC prequest_f2c.lo CC prequest_free.lo CC prequest_get_status.lo CC prget.lo CC prget_accumulate.lo CC prput.lo CC prsend_init.lo CC prsend.lo CC pscan.lo CC piscan.lo CC pscatter.lo CC piscatter.lo CC pscatterv.lo CC piscatterv.lo CC psend.lo CC psend_init.lo CC psendrecv.lo CC psendrecv_replace.lo CC pssend_init.lo CC pssend.lo CC pstart.lo CC pstartall.lo CC pstatus_c2f.lo CC pstatus_f2c.lo CC pstatus_set_cancelled.lo CC pstatus_set_elements.lo CC pstatus_set_elements_x.lo CC ptestall.lo CC ptestany.lo CC ptest.lo CC ptest_cancelled.lo CC ptestsome.lo CC ptopo_test.lo CC ptype_c2f.lo CC ptype_commit.lo CC ptype_contiguous.lo CC ptype_create_darray.lo CC ptype_create_f90_complex.lo CC ptype_create_f90_integer.lo CC ptype_create_f90_real.lo CC ptype_create_hindexed.lo CC ptype_create_hvector.lo CC ptype_create_indexed_block.lo CC ptype_create_hindexed_block.lo CC ptype_create_keyval.lo CC ptype_create_resized.lo CC ptype_create_struct.lo CC ptype_create_subarray.lo CC ptype_delete_attr.lo CC ptype_dup.lo CC ptype_extent.lo CC ptype_f2c.lo CC ptype_free.lo CC ptype_get_attr.lo CC ptype_free_keyval.lo CC ptype_get_contents.lo CC ptype_get_envelope.lo CC ptype_get_extent.lo CC ptype_get_extent_x.lo CC ptype_get_name.lo CC ptype_get_true_extent.lo CC ptype_get_true_extent_x.lo CC ptype_hindexed.lo CC ptype_hvector.lo CC ptype_indexed.lo CC ptype_lb.lo CC ptype_match_size.lo CC ptype_set_attr.lo CC ptype_set_name.lo CC ptype_size.lo CC ptype_size_x.lo CC ptype_struct.lo CC ptype_ub.lo CC ptype_vector.lo CC punpack_external.lo CC punpack.lo CC punpublish_name.lo CC pwait.lo CC pwaitall.lo CC pwaitany.lo CC pwaitsome.lo CC pwtime.lo CC pwtick.lo CC paccumulate.lo CC pget.lo CC pput.lo CC pwin_allocate.lo CC pwin_allocate_shared.lo CC pwin_attach.lo CC pwin_c2f.lo CC pwin_call_errhandler.lo CC pwin_complete.lo CC pwin_create_errhandler.lo CC pwin_create_keyval.lo CC pwin_create.lo CC pwin_create_dynamic.lo CC pwin_delete_attr.lo CC pwin_f2c.lo CC pwin_detach.lo CC pwin_fence.lo CC pwin_flush.lo CC pwin_flush_all.lo CC pwin_flush_local.lo CC pwin_flush_local_all.lo CC pwin_free_keyval.lo CC pwin_free.lo CC pwin_get_attr.lo CC pwin_get_errhandler.lo CC pwin_get_group.lo CC pwin_get_info.lo CC pwin_get_name.lo CC pwin_lock.lo CC pwin_lock_all.lo CC pwin_post.lo CC pwin_set_attr.lo CC pwin_set_errhandler.lo CC pwin_set_info.lo CC pwin_set_name.lo CC pwin_shared_query.lo CC pwin_start.lo CC pwin_sync.lo CC pwin_test.lo CC pwin_unlock.lo CC pwin_unlock_all.lo CC pwin_wait.lo CC pfile_c2f.lo CC pfile_call_errhandler.lo CC pfile_close.lo CC pfile_create_errhandler.lo CC pfile_delete.lo CC pfile_f2c.lo CC pfile_get_amode.lo CC pfile_get_atomicity.lo CC pfile_get_byte_offset.lo CC pfile_get_errhandler.lo CC pfile_get_group.lo CC pfile_get_info.lo CC pfile_get_position.lo CC pfile_get_position_shared.lo CC pfile_get_size.lo CC pfile_get_type_extent.lo CC pfile_get_view.lo CC pfile_iread_at.lo CC pfile_iread.lo CC pfile_iread_shared.lo CC pfile_iwrite_at.lo CC pfile_iwrite.lo CC pfile_iwrite_shared.lo CC pfile_open.lo CC pfile_preallocate.lo CC pfile_read_all_begin.lo CC pfile_read_all.lo CC pfile_read_all_end.lo CC pfile_read_at_all_begin.lo CC pfile_read_at_all.lo CC pfile_read_at_all_end.lo CC pfile_read_at.lo CC pfile_read.lo CC pfile_read_ordered_begin.lo CC pfile_read_ordered.lo CC pfile_read_ordered_end.lo CC pfile_read_shared.lo CC pfile_seek.lo CC pfile_seek_shared.lo CC pfile_set_atomicity.lo CC pfile_set_errhandler.lo CC pfile_set_info.lo CC pfile_set_size.lo CC pfile_set_view.lo CC pfile_sync.lo CC pfile_write_all_begin.lo CC pfile_write_all.lo CC pfile_write_all_end.lo CC pfile_write_at_all_begin.lo CC pfile_write_at_all.lo CC pfile_write_at_all_end.lo CC pfile_write_at.lo CC pfile_write.lo CC pfile_write_ordered_begin.lo CC pfile_write_ordered.lo CC pfile_write_ordered_end.lo CC pfile_write_shared.lo CC pregister_datarep.lo CCLD libmpi_c_pmpi.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' CC attr_fn.lo CCLD libmpi_c.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' Making all in mpi/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool/profile' CC pcategory_changed.lo CC pcategory_get_categories.lo CC pcategory_get_cvars.lo CC pcategory_get_info.lo CC pcategory_get_index.lo CC pcategory_get_num.lo CC pcategory_get_pvars.lo CC pcvar_get_info.lo CC pcvar_get_index.lo CC pcvar_get_num.lo CC pcvar_handle_alloc.lo CC pcvar_handle_free.lo CC pcvar_read.lo CC pcvar_write.lo CC penum_get_info.lo CC penum_get_item.lo CC pfinalize.lo CC pinit_thread.lo CC ppvar_get_info.lo CC ppvar_get_index.lo CC ppvar_get_num.lo CC ppvar_handle_alloc.lo CC ppvar_handle_free.lo CC ppvar_read.lo CC ppvar_readreset.lo CC ppvar_reset.lo CC ppvar_session_create.lo CC ppvar_session_free.lo CC ppvar_start.lo CC ppvar_stop.lo CC ppvar_write.lo CCLD libmpi_pmpit.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' CC mpit_common.lo CCLD libmpi_mpit_common.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' Making all in mpi/fortran/base/ make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/base' CC libmpi_fortran_base_la-attr_fn_f.lo CC libmpi_fortran_base_la-conversion_fn_null_f.lo CC libmpi_fortran_base_la-f90_accessors.lo CC libmpi_fortran_base_la-strings.lo CC libmpi_fortran_base_la-test_constants_f.lo CCLD libmpi_fortran_base.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/base' Making all in mca/common make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common' Making all in mca/allocator make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator' CC base/allocator_base_frame.lo CCLD libmca_allocator.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator' Making all in mca/bcol make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol' CC base/bcol_base_frame.lo CC base/bcol_base_init.lo CCLD libmca_bcol.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol' Making all in mca/bml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml' CC base/bml_base_btl.lo CC base/bml_base_endpoint.lo CC base/bml_base_init.lo CC base/bml_base_frame.lo CC base/bml_base_ft.lo CCLD libmca_bml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml' Making all in mca/btl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl' CC base/btl_base_frame.lo CC base/btl_base_error.lo CC base/btl_base_select.lo CC base/btl_base_mca.lo CCLD libmca_btl.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl' Making all in mca/coll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll' CC base/coll_base_comm_select.lo CC base/coll_base_comm_unselect.lo CC base/coll_base_find_available.lo CC base/coll_base_frame.lo CCLD libmca_coll.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll' Making all in mca/crcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/crcp' CC base/crcp_base_frame.lo CC base/crcp_base_select.lo CC base/crcp_base_fns.lo CCLD libmca_crcp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/crcp' Making all in mca/dpm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm' CC base/dpm_base_frame.lo CC base/dpm_base_select.lo CC base/dpm_base_null_fns.lo CC base/dpm_base_common_fns.lo CCLD libmca_dpm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm' Making all in mca/fbtl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl' CC base/fbtl_base_frame.lo CC base/fbtl_base_file_select.lo CC base/fbtl_base_file_unselect.lo CC base/fbtl_base_find_available.lo CCLD libmca_fbtl.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl' Making all in mca/fcoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll' CC base/fcoll_base_frame.lo CC base/fcoll_base_file_select.lo CC base/fcoll_base_file_unselect.lo CC base/fcoll_base_find_available.lo CCLD libmca_fcoll.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll' Making all in mca/fs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs' CC base/fs_base_frame.lo CC base/fs_base_file_select.lo CC base/fs_base_file_unselect.lo CC base/fs_base_find_available.lo CC base/fs_base_get_parent_dir.lo CCLD libmca_fs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs' Making all in mca/io make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io' CC base/io_base_frame.lo CC base/io_base_delete.lo CC base/io_base_file_select.lo CC base/io_base_find_available.lo CC base/io_base_request.lo CC base/io_base_register_datarep.lo CCLD libmca_io.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io' Making all in mca/mpool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool' CC base/mpool_base_frame.lo CC base/mpool_base_init.lo CC base/mpool_base_lookup.lo CC base/mpool_base_alloc.lo CC base/mpool_base_mem_cb.lo CC base/mpool_base_tree.lo CCLD libmca_mpool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool' Making all in mca/mtl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mtl' CC base/mtl_base_frame.lo CCLD libmca_mtl.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mtl' Making all in mca/op make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/op' CC base/op_base_frame.lo CC base/op_base_find_available.lo CC base/op_base_functions.lo CC base/op_base_op_select.lo CCLD libmca_op.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/op' Making all in mca/osc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc' CC base/osc_base_frame.lo CC base/osc_base_init.lo CC base/osc_base_obj_convert.lo CCLD libmca_osc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc' Making all in mca/pml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml' CC base/pml_base_bsend.lo CC base/pml_base_frame.lo CC base/pml_base_recvreq.lo CC base/pml_base_request.lo CC base/pml_base_select.lo CC base/pml_base_sendreq.lo CC base/pml_base_ft.lo CCLD libmca_pml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml' Making all in mca/pubsub make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub' CC base/pubsub_base_frame.lo CC base/pubsub_base_select.lo CC base/pubsub_base_null_fns.lo CCLD libmca_pubsub.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub' Making all in mca/rcache make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache' CC base/rcache_base_frame.lo CC base/rcache_base_create.lo CCLD libmca_rcache.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache' Making all in mca/rte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte' CC base/rte_base_frame.lo CCLD libmca_rte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte' Making all in mca/sbgp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp' CC base/sbgp_base_frame.lo CC base/sbgp_base_init.lo CCLD libmca_sbgp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp' Making all in mca/sharedfp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp' CC base/sharedfp_base_file_select.lo CC base/sharedfp_base_file_unselect.lo CC base/sharedfp_base_find_available.lo CC base/sharedfp_base_frame.lo CCLD libmca_sharedfp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp' Making all in mca/topo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo' CC base/topo_base_cart_coords.lo CC base/topo_base_cart_create.lo CC base/topo_base_cart_get.lo CC base/topo_base_cart_rank.lo CC base/topo_base_cart_map.lo CC base/topo_base_cart_shift.lo CC base/topo_base_cart_sub.lo CC base/topo_base_cartdim_get.lo CC base/topo_base_comm_select.lo CC base/topo_base_dist_graph_create.lo CC base/topo_base_dist_graph_create_adjacent.lo CC base/topo_base_dist_graph_neighbors.lo CC base/topo_base_dist_graph_neighbors_count.lo CC base/topo_base_find_available.lo CC base/topo_base_frame.lo CC base/topo_base_graph_create.lo CC base/topo_base_graph_get.lo CC base/topo_base_graph_map.lo CC base/topo_base_graph_neighbors.lo CC base/topo_base_graph_neighbors_count.lo CC base/topo_base_graphdims_get.lo CC base/topo_base_lazy_init.lo CCLD libmca_topo.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo' Making all in mca/vprotocol make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol' CC base/vprotocol_base.lo CC base/vprotocol_base_select.lo CC base/vprotocol_base_parasite.lo CC base/vprotocol_base_request.lo CCLD libmca_vprotocol.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol' Making all in mca/common/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/sm' if test -z ""; then \ rm -f "libmca_common_sm.la"; \ ln -s "libmca_common_sm_noinst.la" "libmca_common_sm.la"; \ fi CC common_sm_rml.lo CC common_sm.lo CCLD libmca_common_sm_noinst.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/sm' Making all in mca/common/verbs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/verbs' CC common_verbs_basics.lo CC common_verbs_devlist.lo CC common_verbs_find_max_inline.lo CC common_verbs_find_ports.lo CC common_verbs_mca.lo CC common_verbs_port.lo CC common_verbs_qp_type.lo if test -z ""; then \ rm -f "libmca_common_verbs.la"; \ ln -s "libmca_common_verbs_noinst.la" "libmca_common_verbs.la"; \ fi CCLD libmca_common_verbs_noinst.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/verbs' Making all in mca/allocator/bucket make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/bucket' CC allocator_bucket.lo CC allocator_bucket_alloc.lo CCLD libmca_allocator_bucket.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/bucket' Making all in mca/allocator/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/basic' CC allocator_basic.lo CCLD libmca_allocator_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/basic' Making all in mca/bcol/ptpcoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/ptpcoll' CC bcol_ptpcoll_utils.lo CC bcol_ptpcoll_mca.lo CC bcol_ptpcoll_barrier.lo CC bcol_ptpcoll_bcast.lo CC bcol_ptpcoll_component.lo CC bcol_ptpcoll_fanin.lo CC bcol_ptpcoll_fanout.lo CC bcol_ptpcoll_module.lo CC bcol_ptpcoll_allreduce.lo CC bcol_ptpcoll_reduce.lo CC bcol_ptpcoll_allgather.lo CCLD libmca_bcol_ptpcoll.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/ptpcoll' Making all in mca/bcol/basesmuma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/basesmuma' CC bcol_basesmuma_bcast.lo CC bcol_basesmuma_component.lo CC bcol_basesmuma_module.lo CC bcol_basesmuma_buf_mgmt.lo CC bcol_basesmuma_mem_mgmt.lo CC bcol_basesmuma_fanin.lo CC bcol_basesmuma_fanout.lo CC bcol_basesmuma_progress.lo CC bcol_basesmuma_reduce.lo CC bcol_basesmuma_allreduce.lo CC bcol_basesmuma_setup.lo CC bcol_basesmuma_rd_barrier.lo CC bcol_basesmuma_rd_nb_barrier.lo CC bcol_basesmuma_rk_barrier.lo CC bcol_basesmuma_utils.lo CC bcol_basesmuma_bcast_prime.lo CC bcol_basesmuma_lmsg_knomial_bcast.lo CC bcol_basesmuma_lmsg_bcast.lo CC bcol_basesmuma_allgather.lo CC bcol_basesmuma_gather.lo CC bcol_basesmuma_smcm.lo CCLD libmca_bcol_basesmuma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/basesmuma' Making all in mca/bml/r2 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml/r2' CC bml_r2.lo CC bml_r2_component.lo CC bml_r2_ft.lo CCLD libmca_bml_r2.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml/r2' Making all in mca/btl/self make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/self' CC btl_self.lo CC btl_self_component.lo CC btl_self_frag.lo CCLD libmca_btl_self.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/self' Making all in mca/btl/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/sm' CC libmca_btl_sm_la-btl_sm.lo CC libmca_btl_sm_la-btl_sm_component.lo CC libmca_btl_sm_la-btl_sm_frag.lo CCLD libmca_btl_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/sm' Making all in mca/btl/tcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/tcp' CC btl_tcp.lo CC btl_tcp_component.lo CC btl_tcp_endpoint.lo CC btl_tcp_frag.lo CC btl_tcp_proc.lo CC btl_tcp_ft.lo CCLD libmca_btl_tcp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/tcp' Making all in mca/btl/openib make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/openib' CC btl_openib.lo CC btl_openib_component.lo CC btl_openib_endpoint.lo CC btl_openib_frag.lo CC btl_openib_proc.lo CC btl_openib_lex.lo CC btl_openib_mca.lo CC btl_openib_ini.lo CC btl_openib_async.lo CC btl_openib_xrc.lo CC btl_openib_fd.lo CC btl_openib_ip.lo CC connect/btl_openib_connect_base.lo CC connect/btl_openib_connect_empty.lo CC connect/btl_openib_connect_udcm.lo CCLD libmca_btl_openib.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/openib' Making all in mca/btl/vader make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/vader' CC btl_vader_module.lo CC btl_vader_component.lo CC btl_vader_frag.lo CC btl_vader_send.lo CC btl_vader_sendi.lo CC btl_vader_get.lo CC btl_vader_put.lo CC btl_vader_xpmem.lo CC btl_vader_knem.lo CCLD libmca_btl_vader.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/vader' Making all in mca/coll/tuned make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/tuned' CC coll_tuned_topo.lo CC coll_tuned_util.lo CC coll_tuned_decision_fixed.lo CC coll_tuned_decision_dynamic.lo CC coll_tuned_dynamic_file.lo CC coll_tuned_dynamic_rules.lo CC coll_tuned_allreduce.lo CC coll_tuned_alltoall.lo CC coll_tuned_alltoallv.lo CC coll_tuned_allgather.lo CC coll_tuned_allgatherv.lo CC coll_tuned_barrier.lo CC coll_tuned_bcast.lo CC coll_tuned_reduce.lo CC coll_tuned_reduce_scatter.lo CC coll_tuned_gather.lo CC coll_tuned_scatter.lo CC coll_tuned_component.lo CC coll_tuned_module.lo CCLD libmca_coll_tuned.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/tuned' Making all in mca/coll/libnbc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/libnbc' CC coll_libnbc_component.lo CC coll_libnbc_ireduce_scatter_block.lo CC nbc.lo CC libdict/dict.lo CC libdict/hb_tree.lo CC nbc_iallgather.lo CC nbc_iallgatherv.lo CC nbc_iallreduce.lo CC nbc_ialltoall.lo CC nbc_ialltoallv.lo CC nbc_ialltoallw.lo CC nbc_ibarrier.lo CC nbc_ibcast.lo CC nbc_iexscan.lo CC nbc_ibcast_inter.lo CC nbc_igather.lo CC nbc_igatherv.lo CC nbc_ineighbor_allgather.lo CC nbc_ineighbor_allgatherv.lo CC nbc_ineighbor_alltoall.lo CC nbc_ineighbor_alltoallv.lo CC nbc_ineighbor_alltoallw.lo CC nbc_ireduce.lo CC nbc_ireduce_scatter.lo CC nbc_iscan.lo CC nbc_iscatter.lo CC nbc_iscatterv.lo CC nbc_neighbor_helpers.lo CCLD libmca_coll_libnbc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/libnbc' Making all in mca/coll/self make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/self' CC coll_self_allgather.lo CC coll_self_allgatherv.lo CC coll_self_allreduce.lo CC coll_self_alltoall.lo CC coll_self_alltoallv.lo CC coll_self_alltoallw.lo CC coll_self_barrier.lo CC coll_self_bcast.lo CC coll_self_component.lo CC coll_self_gather.lo CC coll_self_gatherv.lo CC coll_self_module.lo CC coll_self_reduce.lo CC coll_self_reduce_scatter.lo CC coll_self_exscan.lo CC coll_self_scan.lo CC coll_self_scatter.lo CC coll_self_scatterv.lo CCLD libmca_coll_self.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/self' Making all in mca/coll/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/sm' CC coll_sm_allreduce.lo CC coll_sm_barrier.lo CC coll_sm_bcast.lo CC coll_sm_component.lo CC coll_sm_module.lo CC coll_sm_reduce.lo CCLD libmca_coll_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/sm' Making all in mca/coll/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/basic' CC coll_basic_allgather.lo CC coll_basic_allgatherv.lo CC coll_basic_allreduce.lo CC coll_basic_alltoall.lo CC coll_basic_alltoallv.lo CC coll_basic_alltoallw.lo CC coll_basic_barrier.lo CC coll_basic_bcast.lo CC coll_basic_component.lo CC coll_basic_gather.lo CC coll_basic_gatherv.lo CC coll_basic_module.lo CC coll_basic_neighbor_allgather.lo CC coll_basic_neighbor_allgatherv.lo CC coll_basic_neighbor_alltoall.lo CC coll_basic_neighbor_alltoallv.lo CC coll_basic_neighbor_alltoallw.lo CC coll_basic_reduce.lo CC coll_basic_reduce_scatter.lo CC coll_basic_reduce_scatter_block.lo CC coll_basic_scan.lo CC coll_basic_exscan.lo CC coll_basic_scatter.lo CC coll_basic_scatterv.lo CCLD libmca_coll_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/basic' Making all in mca/coll/inter make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/inter' CC coll_inter.lo CC coll_inter_allreduce.lo CC coll_inter_allgather.lo CC coll_inter_allgatherv.lo CC coll_inter_gather.lo CC coll_inter_gatherv.lo CC coll_inter_scatter.lo CC coll_inter_scatterv.lo CC coll_inter_bcast.lo CC coll_inter_component.lo CC coll_inter_reduce.lo CCLD libmca_coll_inter.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/inter' Making all in mca/coll/hierarch make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/hierarch' CC coll_hierarch.lo CC coll_hierarch_allreduce.lo CC coll_hierarch_barrier.lo CC coll_hierarch_bcast.lo CC coll_hierarch_component.lo CC coll_hierarch_reduce.lo CC coll_hierarch_tmpcoll.lo CCLD libmca_coll_hierarch.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/hierarch' Making all in mca/coll/ml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/ml' CC coll_ml_module.lo CC coll_ml_allocation.lo CC coll_ml_barrier.lo CC coll_ml_bcast.lo CC coll_ml_component.lo CC coll_ml_copy_fns.lo CC coll_ml_descriptors.lo CC coll_ml_hier_algorithms.lo CC coll_ml_hier_algorithms_setup.lo CC coll_ml_hier_algorithms_bcast_setup.lo CC coll_ml_hier_algorithms_allreduce_setup.lo CC coll_ml_hier_algorithms_reduce_setup.lo CC coll_ml_hier_algorithms_common_setup.lo CC coll_ml_hier_algorithms_allgather_setup.lo CC coll_ml_hier_algorithm_memsync_setup.lo CC coll_ml_custom_utils.lo CC coll_ml_progress.lo CC coll_ml_reduce.lo CC coll_ml_allreduce.lo CC coll_ml_allgather.lo CC coll_ml_mca.lo CC coll_ml_lmngr.lo CC coll_ml_hier_algorithms_barrier_setup.lo CC coll_ml_select.lo CC coll_ml_memsync.lo CC coll_ml_lex.lo CC coll_ml_config.lo CCLD libmca_coll_ml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/ml' Making all in mca/dpm/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm/orte' CC dpm_orte.lo CC dpm_orte_component.lo CCLD libmca_dpm_orte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm/orte' Making all in mca/fbtl/posix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl/posix' CC fbtl_posix.lo CC fbtl_posix_component.lo CC fbtl_posix_preadv.lo CC fbtl_posix_ipreadv.lo CC fbtl_posix_pwritev.lo CC fbtl_posix_ipwritev.lo CCLD libmca_fbtl_posix.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl/posix' Making all in mca/fcoll/individual make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/individual' CC fcoll_individual_module.lo CC fcoll_individual_component.lo CC fcoll_individual_file_read_all.lo CC fcoll_individual_file_read_all_begin.lo CC fcoll_individual_file_read_all_end.lo CC fcoll_individual_file_write_all.lo CC fcoll_individual_file_write_all_begin.lo CC fcoll_individual_file_write_all_end.lo CCLD libmca_fcoll_individual.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/individual' Making all in mca/fcoll/dynamic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/dynamic' CC fcoll_dynamic_module.lo CC fcoll_dynamic_component.lo CC fcoll_dynamic_file_read_all.lo CC fcoll_dynamic_file_read_all_begin.lo CC fcoll_dynamic_file_read_all_end.lo CC fcoll_dynamic_file_write_all.lo CC fcoll_dynamic_file_write_all_begin.lo CC fcoll_dynamic_file_write_all_end.lo CCLD libmca_fcoll_dynamic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/dynamic' Making all in mca/fcoll/ylib make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/ylib' CC fcoll_ylib_module.lo CC fcoll_ylib_component.lo CC fcoll_ylib_file_read_all.lo CC fcoll_ylib_file_read_all_begin.lo CC fcoll_ylib_file_read_all_end.lo CC fcoll_ylib_file_write_all.lo CC fcoll_ylib_file_write_all_begin.lo CC fcoll_ylib_file_write_all_end.lo CCLD libmca_fcoll_ylib.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/ylib' Making all in mca/fcoll/static make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/static' CC fcoll_static_module.lo CC fcoll_static_component.lo CC fcoll_static_file_read_all.lo CC fcoll_static_file_read_all_begin.lo CC fcoll_static_file_read_all_end.lo CC fcoll_static_file_write_all.lo CC fcoll_static_file_write_all_begin.lo CC fcoll_static_file_write_all_end.lo CCLD libmca_fcoll_static.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/static' Making all in mca/fcoll/two_phase make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/two_phase' CC fcoll_two_phase_module.lo CC fcoll_two_phase_component.lo CC fcoll_two_phase_file_read_all.lo CC fcoll_two_phase_file_read_all_begin.lo CC fcoll_two_phase_file_read_all_end.lo CC fcoll_two_phase_file_write_all.lo CC fcoll_two_phase_file_write_all_begin.lo CC fcoll_two_phase_support_fns.lo CC fcoll_two_phase_file_write_all_end.lo CCLD libmca_fcoll_two_phase.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/two_phase' Making all in mca/fs/ufs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs/ufs' CC fs_ufs.lo CC fs_ufs_component.lo CC fs_ufs_file_open.lo CC fs_ufs_file_close.lo CC fs_ufs_file_delete.lo CC fs_ufs_file_sync.lo CC fs_ufs_file_set_size.lo CC fs_ufs_file_get_size.lo CC fs_ufs_file_set_info.lo CCLD libmca_fs_ufs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs/ufs' Making all in mca/io/ompio make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/ompio' CC io_ompio.lo CC io_ompio_component.lo CC io_ompio_module.lo CC io_ompio_coll_array.lo CC io_ompio_file_set_view.lo CC io_ompio_file_open.lo CC io_ompio_file_write.lo CC io_ompio_file_read.lo CC io_ompio_nbc.lo CCLD libmca_io_ompio.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/ompio' Making all in mca/io/romio make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' Making all in romio make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atallb.lo CC mpi-io/rd_atalle.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_ord.lo CC mpi-io/read_atall.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/openmpi/mpio_file.lo CC mpi-io/glue/openmpi/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_str.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_subarray.lo CC adio/common/ad_set_view.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap-sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CCLD libromio_dist.la make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' CC src/io_romio_component.lo CC src/io_romio_file_open.lo CC src/io_romio_file_read.lo CC src/io_romio_file_write.lo CC src/io_romio_module.lo CCLD libmca_io_romio.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' Making all in mca/mpool/grdma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/grdma' CC mpool_grdma_module.lo CC mpool_grdma_component.lo CCLD libmca_mpool_grdma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/grdma' Making all in mca/mpool/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/sm' CC mpool_sm_module.lo CC mpool_sm_component.lo CCLD libmca_mpool_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/sm' Making all in mca/osc/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/sm' CC osc_sm_comm.lo CC osc_sm_component.lo CC osc_sm_active_target.lo CC osc_sm_passive_target.lo CCLD libmca_osc_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/sm' Making all in mca/osc/rdma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/rdma' CC osc_rdma.lo CC osc_rdma_comm.lo CC osc_rdma_component.lo CC osc_rdma_data_move.lo CC osc_rdma_frag.lo CC osc_rdma_request.lo CC osc_rdma_active_target.lo CC osc_rdma_passive_target.lo CCLD libmca_osc_rdma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/rdma' Making all in mca/pml/cm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/cm' CC pml_cm.lo CC pml_cm_cancel.lo CC pml_cm_component.lo CC pml_cm_probe.lo CC pml_cm_recv.lo CC pml_cm_recvreq.lo CC pml_cm_request.lo CC pml_cm_send.lo CC pml_cm_sendreq.lo CC pml_cm_start.lo CCLD libmca_pml_cm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/cm' Making all in mca/pml/bfo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/bfo' CC pml_bfo_comm.lo CC pml_bfo.lo CC pml_bfo_component.lo CC pml_bfo_failover.lo CC pml_bfo_iprobe.lo CC pml_bfo_irecv.lo CC pml_bfo_isend.lo CC pml_bfo_progress.lo CC pml_bfo_rdma.lo CC pml_bfo_rdmafrag.lo CC pml_bfo_recvfrag.lo CC pml_bfo_recvreq.lo CC pml_bfo_sendreq.lo CC pml_bfo_start.lo CCLD libmca_pml_bfo.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/bfo' Making all in mca/pml/v make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/v' CC pml_v_output.lo CC pml_v_component.lo CCLD libmca_pml_v.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/v' Making all in mca/pml/ob1 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/ob1' CC pml_ob1_comm.lo CC pml_ob1.lo CC pml_ob1_component.lo CC pml_ob1_iprobe.lo CC pml_ob1_irecv.lo CC pml_ob1_isend.lo CC pml_ob1_progress.lo CC pml_ob1_rdma.lo CC pml_ob1_rdmafrag.lo CC pml_ob1_recvfrag.lo CC pml_ob1_recvreq.lo CC pml_ob1_sendreq.lo CC pml_ob1_start.lo CCLD libmca_pml_ob1.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/ob1' Making all in mca/pubsub/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub/orte' CC pubsub_orte_component.lo CC pubsub_orte.lo CCLD libmca_pubsub_orte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub/orte' Making all in mca/rcache/vma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache/vma' CC rcache_vma.lo CC rcache_vma_component.lo CC rcache_vma_tree.lo CCLD libmca_rcache_vma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache/vma' Making all in mca/rte/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte/orte' CC rte_orte_component.lo cp -f ../../../../orte/tools/orterun/orterun.1 mpirun.1 cp -f ../../../../orte/tools/orterun/orterun.1 mpiexec.1 cp -f ../../../../orte/tools/orte-ps/orte-ps.1 ompi-ps.1 cp -f ../../../../orte/tools/orte-clean/orte-clean.1 ompi-clean.1 CC rte_orte_module.lo cp -f ../../../../orte/tools/orte-top/orte-top.1 ompi-top.1 cp -f ../../../../orte/tools/orte-server/orte-server.1 ompi-server.1 CCLD libmca_rte_orte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte/orte' Making all in mca/sbgp/basesmuma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmuma' CC sbgp_basesmuma_component.lo CC sbgp_basesmuma_module.lo CCLD libmca_sbgp_basesmuma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmuma' Making all in mca/sbgp/basesmsocket make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmsocket' CC sbgp_basesmsocket_component.lo CC sbgp_basesmsocket_module.lo CCLD libmca_sbgp_basesmsocket.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmsocket' Making all in mca/sbgp/p2p make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/p2p' CC sbgp_p2p_component.lo CC sbgp_p2p_module.lo CCLD libmca_sbgp_p2p.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/p2p' Making all in mca/sharedfp/individual make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/individual' CC sharedfp_individual.lo CC sharedfp_individual_component.lo CC sharedfp_individual_seek.lo CC sharedfp_individual_get_position.lo CC sharedfp_individual_collaborate_data.lo CC sharedfp_individual_write.lo CC sharedfp_individual_iwrite.lo CC sharedfp_individual_read.lo CC sharedfp_individual_insert_metadata.lo CC sharedfp_individual_file_open.lo CC sharedfp_individual_gettime.lo CCLD libmca_sharedfp_individual.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/individual' Making all in mca/sharedfp/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/sm' CC sharedfp_sm_component.lo CC sharedfp_sm.lo CC sharedfp_sm_seek.lo CC sharedfp_sm_get_position.lo CC sharedfp_sm_request_position.lo CC sharedfp_sm_write.lo CC sharedfp_sm_iwrite.lo CC sharedfp_sm_read.lo CC sharedfp_sm_iread.lo CC sharedfp_sm_file_open.lo CCLD libmca_sharedfp_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/sm' Making all in mca/sharedfp/lockedfile make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/lockedfile' CC sharedfp_lockedfile.lo CC sharedfp_lockedfile_component.lo CC sharedfp_lockedfile_seek.lo CC sharedfp_lockedfile_get_position.lo CC sharedfp_lockedfile_request_position.lo CC sharedfp_lockedfile_write.lo CC sharedfp_lockedfile_iwrite.lo CC sharedfp_lockedfile_read.lo CC sharedfp_lockedfile_iread.lo CC sharedfp_lockedfile_file_open.lo CCLD libmca_sharedfp_lockedfile.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/lockedfile' Making all in mca/topo/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo/basic' CC topo_basic_component.lo CCLD libmca_topo_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo/basic' Making all in mca/vprotocol/pessimist make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol/pessimist' CC vprotocol_pessimist.lo CC vprotocol_pessimist_component.lo CC vprotocol_pessimist_request.lo CC vprotocol_pessimist_proc.lo CC vprotocol_pessimist_comm.lo CC vprotocol_pessimist_progress.lo CC vprotocol_pessimist_start.lo CC vprotocol_pessimist_recv.lo CC vprotocol_pessimist_send.lo CC vprotocol_pessimist_probe.lo CC vprotocol_pessimist_wait.lo CC vprotocol_pessimist_event.lo CC vprotocol_pessimist_eventlog.lo CC vprotocol_pessimist_sender_based.lo CCLD libmca_vprotocol_pessimist.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol/pessimist' Making all in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' CC class/ompi_free_list.lo CC class/ompi_seq_tracker.lo CC class/ompi_rb_tree.lo CC attribute/attribute.lo CC attribute/attribute_predefined.lo CC communicator/comm_init.lo CC communicator/comm.lo CC communicator/comm_cid.lo CC communicator/comm_request.lo CC communicator/comm_helpers.lo CC errhandler/errhandler.lo CC errhandler/errhandler_invoke.lo CC errhandler/errhandler_predefined.lo CC errhandler/errcode.lo CC errhandler/errcode-internal.lo CC file/file.lo CC group/group.lo CC group/group_set_rank.lo CC group/group_init.lo CC group/group_plist.lo CC group/group_strided.lo CC group/group_sporadic.lo CC group/group_bitmap.lo CC info/info.lo CC message/message.lo CC op/op.lo CC proc/proc.lo CC request/grequest.lo CC request/request.lo CC request/req_test.lo CC request/req_wait.lo CC runtime/ompi_mpi_abort.lo CC runtime/ompi_mpi_init.lo CC runtime/ompi_mpi_finalize.lo CC runtime/ompi_mpi_params.lo CC runtime/ompi_mpi_preconnect.lo CC runtime/ompi_cr.lo CC runtime/ompi_module_exchange.lo CC runtime/ompi_info_support.lo CC win/win.lo CC mpiext/mpiext.lo CC patterns/net/netpatterns_base.lo CC patterns/net/netpatterns_multinomial_tree.lo CC patterns/net/netpatterns_nary_tree.lo CC patterns/net/netpatterns_knomial_tree.lo CC patterns/comm/allreduce.lo CC patterns/comm/allgather.lo CC patterns/comm/bcast.lo CCLD libmpi.la copying selected object files to avoid basename conflicts... make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making all in mpi/cxx make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/cxx' CXX mpicxx.lo CXX intercepts.lo CXX comm.lo CXX datatype.lo CXX win.lo CXX file.lo CXXLD libmpi_cxx.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/cxx' Making all in mpi/fortran/mpif-h make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h/profile' GENERATE psizeof_f.f90 CC pabort_f.lo CC padd_error_class_f.lo CC padd_error_code_f.lo CC padd_error_string_f.lo CC paddress_f.lo CC pallgather_f.lo CC pallgatherv_f.lo CC palloc_mem_f.lo CC pallreduce_f.lo CC palltoall_f.lo CC palltoallv_f.lo CC palltoallw_f.lo CC pattr_delete_f.lo CC pattr_get_f.lo CC pattr_put_f.lo CC pbarrier_f.lo CC pbcast_f.lo CC pbsend_f.lo CC pbsend_init_f.lo CC pbuffer_attach_f.lo CC pbuffer_detach_f.lo CC pcancel_f.lo CC pcart_coords_f.lo CC pcart_create_f.lo CC pcartdim_get_f.lo CC pcart_get_f.lo CC pcart_map_f.lo CC pcart_rank_f.lo CC pcart_shift_f.lo CC pcart_sub_f.lo CC pclose_port_f.lo CC pcomm_accept_f.lo CC pcomm_call_errhandler_f.lo CC pcomm_compare_f.lo CC pcomm_connect_f.lo CC pcomm_create_errhandler_f.lo CC pcomm_create_f.lo CC pcomm_create_group_f.lo CC pcomm_create_keyval_f.lo CC pcomm_delete_attr_f.lo CC pcomm_disconnect_f.lo CC pcomm_dup_f.lo CC pcomm_dup_with_info_f.lo CC pcomm_idup_f.lo CC pcomm_free_f.lo CC pcomm_free_keyval_f.lo CC pcomm_get_attr_f.lo CC pcomm_get_errhandler_f.lo CC pcomm_get_info_f.lo CC pcomm_get_name_f.lo CC pcomm_get_parent_f.lo CC pcomm_group_f.lo CC pcomm_join_f.lo CC pcomm_rank_f.lo CC pcomm_remote_group_f.lo CC pcomm_remote_size_f.lo CC pcomm_set_attr_f.lo CC pcomm_set_errhandler_f.lo CC pcomm_set_info_f.lo CC pcomm_set_name_f.lo CC pcomm_size_f.lo CC pcomm_spawn_f.lo CC pcomm_spawn_multiple_f.lo CC pcomm_split_f.lo CC pcomm_split_type_f.lo CC pcomm_test_inter_f.lo CC pdims_create_f.lo CC pdist_graph_create_adjacent_f.lo CC pdist_graph_create_f.lo CC pdist_graph_neighbors_f.lo CC pdist_graph_neighbors_count_f.lo CC perrhandler_create_f.lo CC perrhandler_free_f.lo CC perrhandler_get_f.lo CC perrhandler_set_f.lo CC perror_class_f.lo CC perror_string_f.lo CC pexscan_f.lo CC pf_sync_reg_f.lo CC pfinalized_f.lo CC pfinalize_f.lo CC pfree_mem_f.lo CC pgather_f.lo CC pgatherv_f.lo CC pget_address_f.lo CC pget_count_f.lo CC pget_elements_f.lo CC pget_elements_x_f.lo CC pget_library_version_f.lo CC pget_processor_name_f.lo CC pget_version_f.lo CC pgraph_create_f.lo CC pgraphdims_get_f.lo CC pgraph_get_f.lo CC pgraph_map_f.lo CC pgraph_neighbors_count_f.lo CC pgraph_neighbors_f.lo CC pgrequest_complete_f.lo CC pgrequest_start_f.lo CC pgroup_compare_f.lo CC pgroup_difference_f.lo CC pgroup_excl_f.lo CC pgroup_free_f.lo CC pgroup_incl_f.lo CC pgroup_intersection_f.lo CC pgroup_range_excl_f.lo CC pgroup_range_incl_f.lo CC pgroup_rank_f.lo CC pgroup_size_f.lo CC pgroup_translate_ranks_f.lo CC pgroup_union_f.lo CC piallgather_f.lo CC piallgatherv_f.lo CC piallreduce_f.lo CC pialltoall_f.lo CC pialltoallv_f.lo CC pialltoallw_f.lo CC pibarrier_f.lo CC pibcast_f.lo CC pibsend_f.lo CC piexscan_f.lo CC pigather_f.lo CC pigatherv_f.lo CC pimprobe_f.lo CC pimrecv_f.lo CC pineighbor_allgather_f.lo CC pineighbor_allgatherv_f.lo CC pineighbor_alltoall_f.lo CC pineighbor_alltoallv_f.lo CC pineighbor_alltoallw_f.lo CC pinfo_delete_f.lo CC pinfo_create_f.lo CC pinfo_dup_f.lo CC pinfo_free_f.lo CC pinfo_get_f.lo CC pinfo_get_nkeys_f.lo CC pinfo_get_nthkey_f.lo CC pinfo_get_valuelen_f.lo CC pinfo_set_f.lo CC pinit_f.lo CC pinitialized_f.lo CC pinit_thread_f.lo CC pintercomm_create_f.lo CC pintercomm_merge_f.lo CC piprobe_f.lo CC pirecv_f.lo CC pireduce_f.lo CC pireduce_scatter_f.lo CC pireduce_scatter_block_f.lo CC pirsend_f.lo CC piscan_f.lo CC piscatter_f.lo CC pisend_f.lo CC piscatterv_f.lo CC pissend_f.lo CC pis_thread_main_f.lo CC pkeyval_create_f.lo CC pkeyval_free_f.lo CC plookup_name_f.lo CC pmprobe_f.lo CC pmrecv_f.lo CC pneighbor_allgather_f.lo CC pneighbor_allgatherv_f.lo CC pneighbor_alltoall_f.lo CC pneighbor_alltoallv_f.lo CC pneighbor_alltoallw_f.lo CC pop_commutative_f.lo CC pop_create_f.lo CC popen_port_f.lo CC pop_free_f.lo CC ppack_external_f.lo CC ppack_external_size_f.lo CC ppack_f.lo CC ppack_size_f.lo CC ppcontrol_f.lo CC pprobe_f.lo CC ppublish_name_f.lo CC pquery_thread_f.lo CC precv_f.lo CC precv_init_f.lo CC preduce_f.lo CC preduce_local_f.lo CC preduce_scatter_f.lo CC preduce_scatter_block_f.lo CC prequest_free_f.lo CC prequest_get_status_f.lo CC prsend_f.lo CC prsend_init_f.lo CC pscan_f.lo CC pscatter_f.lo CC pscatterv_f.lo CC psend_f.lo CC psend_init_f.lo CC psendrecv_f.lo CC psendrecv_replace_f.lo CC pssend_f.lo CC pssend_init_f.lo CC pstartall_f.lo CC pstart_f.lo CC pstatus_set_cancelled_f.lo CC pstatus_set_elements_f.lo CC pstatus_set_elements_x_f.lo CC ptestall_f.lo CC ptestany_f.lo CC ptest_cancelled_f.lo CC ptest_f.lo CC ptestsome_f.lo CC ptopo_test_f.lo CC ptype_commit_f.lo CC ptype_contiguous_f.lo CC ptype_create_darray_f.lo CC ptype_create_f90_complex_f.lo CC ptype_create_f90_integer_f.lo CC ptype_create_f90_real_f.lo CC ptype_create_hindexed_f.lo CC ptype_create_hvector_f.lo CC ptype_create_indexed_block_f.lo CC ptype_create_hindexed_block_f.lo CC ptype_create_keyval_f.lo CC ptype_create_resized_f.lo CC ptype_create_struct_f.lo CC ptype_create_subarray_f.lo CC ptype_delete_attr_f.lo CC ptype_dup_f.lo CC ptype_extent_f.lo CC ptype_free_f.lo CC ptype_get_attr_f.lo CC ptype_free_keyval_f.lo CC ptype_get_contents_f.lo CC ptype_get_envelope_f.lo CC ptype_get_extent_f.lo CC ptype_get_extent_x_f.lo CC ptype_get_name_f.lo CC ptype_get_true_extent_f.lo CC ptype_get_true_extent_x_f.lo CC ptype_hindexed_f.lo CC ptype_hvector_f.lo CC ptype_indexed_f.lo CC ptype_lb_f.lo CC ptype_match_size_f.lo CC ptype_set_attr_f.lo CC ptype_set_name_f.lo CC ptype_size_f.lo CC ptype_size_x_f.lo CC ptype_struct_f.lo CC ptype_ub_f.lo CC ptype_vector_f.lo CC punpack_external_f.lo CC punpack_f.lo CC punpublish_name_f.lo CC pwaitall_f.lo CC pwaitany_f.lo CC pwait_f.lo CC pwaitsome_f.lo CC pwtick_f.lo CC pwtime_f.lo CC paccumulate_f.lo CC praccumulate_f.lo CC prget_f.lo CC pget_f.lo CC pget_accumulate_f.lo CC prget_accumulate_f.lo CC prput_f.lo CC pput_f.lo CC pcompare_and_swap_f.lo CC pfetch_and_op_f.lo CC pwin_allocate_f.lo CC pwin_allocate_shared_f.lo CC pwin_call_errhandler_f.lo CC pwin_complete_f.lo CC pwin_create_errhandler_f.lo CC pwin_create_f.lo CC pwin_create_keyval_f.lo CC pwin_delete_attr_f.lo CC pwin_free_f.lo CC pwin_free_keyval_f.lo CC pwin_fence_f.lo CC pwin_get_attr_f.lo CC pwin_get_errhandler_f.lo CC pwin_get_group_f.lo CC pwin_get_name_f.lo CC pwin_lock_f.lo CC pwin_lock_all_f.lo CC pwin_post_f.lo CC pwin_set_attr_f.lo CC pwin_set_errhandler_f.lo CC pwin_set_name_f.lo CC pwin_shared_query_f.lo CC pwin_start_f.lo CC pwin_sync_f.lo CC pwin_test_f.lo CC pwin_unlock_f.lo CC pwin_wait_f.lo CC pwin_unlock_all_f.lo CC pwin_flush_f.lo CC pwin_flush_all_f.lo CC pwin_flush_local_f.lo CC pwin_flush_local_all_f.lo CC pfile_call_errhandler_f.lo CC pfile_close_f.lo CC pfile_create_errhandler_f.lo CC pfile_delete_f.lo CC pfile_get_amode_f.lo CC pfile_get_atomicity_f.lo CC pfile_get_byte_offset_f.lo CC pfile_get_errhandler_f.lo CC pfile_get_group_f.lo CC pfile_get_info_f.lo CC pfile_get_position_f.lo CC pfile_get_position_shared_f.lo CC pfile_get_size_f.lo CC pfile_get_type_extent_f.lo CC pfile_get_view_f.lo CC pfile_iread_at_f.lo CC pfile_iread_f.lo CC pfile_iread_shared_f.lo CC pfile_iwrite_f.lo CC pfile_iwrite_shared_f.lo CC pfile_open_f.lo CC pfile_iwrite_at_f.lo CC pfile_preallocate_f.lo CC pfile_read_all_begin_f.lo CC pfile_read_all_end_f.lo CC pfile_read_all_f.lo CC pfile_read_at_all_begin_f.lo CC pfile_read_at_all_end_f.lo CC pfile_read_at_all_f.lo CC pfile_read_at_f.lo CC pfile_read_f.lo CC pfile_read_ordered_begin_f.lo CC pfile_read_ordered_end_f.lo CC pfile_read_ordered_f.lo CC pfile_read_shared_f.lo CC pfile_seek_f.lo CC pfile_seek_shared_f.lo CC pfile_set_atomicity_f.lo CC pfile_set_errhandler_f.lo CC pfile_set_info_f.lo CC pfile_set_size_f.lo CC pfile_set_view_f.lo CC pfile_sync_f.lo CC pfile_write_all_begin_f.lo CC pfile_write_all_end_f.lo CC pfile_write_all_f.lo CC pfile_write_at_all_begin_f.lo CC pfile_write_at_all_end_f.lo CC pfile_write_at_all_f.lo CC pfile_write_at_f.lo CC pfile_write_f.lo CC pfile_write_ordered_begin_f.lo CC pfile_write_ordered_end_f.lo CC pfile_write_ordered_f.lo CC pfile_write_shared_f.lo CC pregister_datarep_f.lo FC psizeof_f.lo FCLD libmpi_mpifh_pmpi.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' FC libmpi_mpifh_sizeof_la-sizeof-mpi-pre-1.8.4_f.lo GENERATE sizeof_f.f90 PPFC libmpi_mpifh_sizeof_la-sizeof-mpif08-pre-1.8.4_f.lo FC libmpi_mpifh_sizeof_la-sizeof_f.lo FCLD libmpi_mpifh_sizeof.la CCLD libmpi_mpifh.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' Making all in mpi/fortran/use-mpi-ignore-tkr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-ignore-tkr' CC gratuitious-symbol.lo GENERATE mpi-ignore-tkr-sizeof.f90 GENERATE mpi-ignore-tkr-sizeof.h CC usempi-dummy.lo FC mpi-ignore-tkr-sizeof.lo PPFC mpi-ignore-tkr.lo FCLD libmpi_usempi_ignore_tkr.la CCLD libmpi_usempi.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-ignore-tkr' Making all in mpi/fortran/use-mpi-f08 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-f08' PPFC mpi-f08-types.lo GENERATE sizeof_f08.h GENERATE sizeof_f08.f90 GENERATE profile/psizeof_f08.f90 CC constants.lo FC profile/psizeof_f08.lo FC sizeof_f08.lo PPFC mpi-f08-interfaces-callbacks.lo PPFC mpi-f08-interfaces.lo PPFC pmpi-f08-interfaces.lo FCLD libforce_usempif08_internal_modules_to_be_built.la PPFC mpi-f08.lo PPFC accumulate_f08.lo PPFC add_error_class_f08.lo PPFC add_error_code_f08.lo PPFC add_error_string_f08.lo PPFC abort_f08.lo PPFC allgather_f08.lo PPFC allgatherv_f08.lo PPFC alloc_mem_f08.lo PPFC allreduce_f08.lo PPFC alltoall_f08.lo PPFC alltoallv_f08.lo PPFC alltoallw_f08.lo PPFC barrier_f08.lo PPFC bcast_f08.lo PPFC bsend_f08.lo PPFC bsend_init_f08.lo PPFC buffer_attach_f08.lo PPFC buffer_detach_f08.lo PPFC cart_coords_f08.lo PPFC cart_create_f08.lo PPFC cancel_f08.lo PPFC cartdim_get_f08.lo PPFC cart_map_f08.lo PPFC cart_get_f08.lo PPFC cart_rank_f08.lo PPFC cart_sub_f08.lo PPFC cart_shift_f08.lo PPFC close_port_f08.lo PPFC comm_accept_f08.lo PPFC comm_call_errhandler_f08.lo PPFC comm_compare_f08.lo PPFC comm_create_errhandler_f08.lo PPFC comm_connect_f08.lo PPFC comm_create_f08.lo PPFC comm_create_group_f08.lo PPFC comm_create_keyval_f08.lo PPFC comm_delete_attr_f08.lo PPFC comm_disconnect_f08.lo PPFC comm_dup_f08.lo PPFC comm_dup_with_info_f08.lo PPFC comm_idup_f08.lo PPFC comm_free_f08.lo PPFC comm_free_keyval_f08.lo PPFC comm_get_attr_f08.lo PPFC comm_get_errhandler_f08.lo PPFC comm_get_info_f08.lo PPFC comm_get_name_f08.lo PPFC comm_get_parent_f08.lo PPFC comm_group_f08.lo PPFC comm_rank_f08.lo PPFC comm_join_f08.lo PPFC comm_remote_group_f08.lo PPFC comm_remote_size_f08.lo PPFC comm_set_attr_f08.lo PPFC comm_set_errhandler_f08.lo PPFC comm_set_info_f08.lo PPFC comm_set_name_f08.lo PPFC comm_size_f08.lo PPFC comm_spawn_f08.lo PPFC comm_spawn_multiple_f08.lo PPFC comm_split_f08.lo PPFC comm_split_type_f08.lo PPFC comm_test_inter_f08.lo PPFC compare_and_swap_f08.lo PPFC dist_graph_create_adjacent_f08.lo PPFC dist_graph_create_f08.lo PPFC dist_graph_neighbors_count_f08.lo PPFC dist_graph_neighbors_f08.lo PPFC dims_create_f08.lo PPFC errhandler_free_f08.lo PPFC error_class_f08.lo PPFC error_string_f08.lo PPFC exscan_f08.lo PPFC f_sync_reg_f08.lo PPFC fetch_and_op_f08.lo PPFC finalized_f08.lo PPFC finalize_f08.lo PPFC free_mem_f08.lo PPFC gather_f08.lo PPFC gatherv_f08.lo PPFC get_accumulate_f08.lo PPFC get_address_f08.lo PPFC get_count_f08.lo PPFC get_elements_f08.lo PPFC get_elements_x_f08.lo PPFC get_f08.lo PPFC get_library_version_f08.lo PPFC get_processor_name_f08.lo PPFC get_version_f08.lo PPFC graph_create_f08.lo PPFC graphdims_get_f08.lo PPFC graph_get_f08.lo PPFC graph_map_f08.lo PPFC graph_neighbors_count_f08.lo PPFC grequest_complete_f08.lo PPFC graph_neighbors_f08.lo PPFC grequest_start_f08.lo PPFC group_compare_f08.lo PPFC group_difference_f08.lo PPFC group_excl_f08.lo PPFC group_free_f08.lo PPFC group_incl_f08.lo PPFC group_intersection_f08.lo PPFC group_range_excl_f08.lo PPFC group_range_incl_f08.lo PPFC group_rank_f08.lo PPFC group_size_f08.lo PPFC group_translate_ranks_f08.lo PPFC group_union_f08.lo PPFC iallgather_f08.lo PPFC iallgatherv_f08.lo PPFC iallreduce_f08.lo PPFC ialltoall_f08.lo PPFC ialltoallv_f08.lo PPFC ialltoallw_f08.lo PPFC ibarrier_f08.lo PPFC ibcast_f08.lo PPFC ibsend_f08.lo PPFC iexscan_f08.lo PPFC igather_f08.lo PPFC igatherv_f08.lo PPFC improbe_f08.lo PPFC imrecv_f08.lo PPFC ineighbor_allgather_f08.lo PPFC ineighbor_allgatherv_f08.lo PPFC ineighbor_alltoall_f08.lo PPFC ineighbor_alltoallv_f08.lo PPFC ineighbor_alltoallw_f08.lo PPFC info_create_f08.lo PPFC info_delete_f08.lo PPFC info_dup_f08.lo PPFC info_free_f08.lo PPFC info_get_f08.lo PPFC info_get_nkeys_f08.lo PPFC info_get_nthkey_f08.lo PPFC info_get_valuelen_f08.lo PPFC info_set_f08.lo PPFC init_f08.lo PPFC initialized_f08.lo PPFC init_thread_f08.lo PPFC intercomm_create_f08.lo PPFC intercomm_merge_f08.lo PPFC iprobe_f08.lo PPFC irecv_f08.lo PPFC ireduce_f08.lo PPFC ireduce_scatter_f08.lo PPFC ireduce_scatter_block_f08.lo PPFC irsend_f08.lo PPFC iscan_f08.lo PPFC iscatter_f08.lo PPFC iscatterv_f08.lo PPFC isend_f08.lo PPFC issend_f08.lo PPFC lookup_name_f08.lo PPFC mprobe_f08.lo PPFC is_thread_main_f08.lo PPFC mrecv_f08.lo PPFC neighbor_allgather_f08.lo PPFC neighbor_allgatherv_f08.lo PPFC neighbor_alltoall_f08.lo PPFC neighbor_alltoallv_f08.lo PPFC neighbor_alltoallw_f08.lo PPFC op_commutative_f08.lo PPFC op_create_f08.lo PPFC open_port_f08.lo PPFC op_free_f08.lo PPFC pack_external_f08.lo PPFC pack_external_size_f08.lo PPFC pack_size_f08.lo PPFC pack_f08.lo PPFC pcontrol_f08.lo PPFC probe_f08.lo PPFC publish_name_f08.lo PPFC query_thread_f08.lo PPFC put_f08.lo PPFC raccumulate_f08.lo PPFC recv_f08.lo PPFC recv_init_f08.lo PPFC reduce_f08.lo PPFC reduce_local_f08.lo PPFC reduce_scatter_f08.lo PPFC reduce_scatter_block_f08.lo PPFC request_free_f08.lo PPFC request_get_status_f08.lo PPFC rget_f08.lo PPFC rget_accumulate_f08.lo PPFC rput_f08.lo PPFC rsend_f08.lo PPFC rsend_init_f08.lo PPFC scan_f08.lo PPFC scatter_f08.lo PPFC scatterv_f08.lo PPFC send_f08.lo PPFC send_init_f08.lo PPFC sendrecv_f08.lo PPFC sendrecv_replace_f08.lo PPFC ssend_f08.lo PPFC ssend_init_f08.lo PPFC startall_f08.lo PPFC start_f08.lo PPFC status_set_cancelled_f08.lo PPFC status_set_elements_f08.lo PPFC status_set_elements_x_f08.lo PPFC testall_f08.lo PPFC testany_f08.lo PPFC test_cancelled_f08.lo PPFC test_f08.lo PPFC testsome_f08.lo PPFC topo_test_f08.lo PPFC type_commit_f08.lo PPFC type_contiguous_f08.lo PPFC type_create_darray_f08.lo PPFC type_create_f90_complex_f08.lo PPFC type_create_f90_integer_f08.lo PPFC type_create_f90_real_f08.lo PPFC type_create_hindexed_f08.lo PPFC type_create_hvector_f08.lo PPFC type_create_hindexed_block_f08.lo PPFC type_create_indexed_block_f08.lo PPFC type_create_keyval_f08.lo PPFC type_create_resized_f08.lo PPFC type_create_struct_f08.lo PPFC type_create_subarray_f08.lo PPFC type_delete_attr_f08.lo PPFC type_dup_f08.lo PPFC type_free_f08.lo PPFC type_free_keyval_f08.lo PPFC type_get_attr_f08.lo PPFC type_get_contents_f08.lo PPFC type_get_envelope_f08.lo PPFC type_get_extent_f08.lo PPFC type_get_extent_x_f08.lo PPFC type_get_name_f08.lo PPFC type_get_true_extent_f08.lo PPFC type_get_true_extent_x_f08.lo PPFC type_indexed_f08.lo PPFC type_match_size_f08.lo PPFC type_set_attr_f08.lo PPFC type_set_name_f08.lo PPFC type_size_f08.lo PPFC type_vector_f08.lo PPFC unpack_external_f08.lo PPFC unpack_f08.lo PPFC unpublish_name_f08.lo PPFC waitall_f08.lo PPFC waitany_f08.lo PPFC wait_f08.lo PPFC waitsome_f08.lo PPFC win_allocate_f08.lo PPFC win_allocate_shared_f08.lo PPFC win_call_errhandler_f08.lo PPFC win_complete_f08.lo PPFC win_create_f08.lo PPFC win_create_errhandler_f08.lo PPFC win_create_keyval_f08.lo PPFC win_delete_attr_f08.lo PPFC win_fence_f08.lo PPFC win_flush_f08.lo PPFC win_flush_all_f08.lo PPFC win_flush_local_f08.lo PPFC win_flush_local_all_f08.lo PPFC win_free_f08.lo PPFC win_free_keyval_f08.lo PPFC win_get_attr_f08.lo PPFC win_get_group_f08.lo PPFC win_get_errhandler_f08.lo PPFC win_get_name_f08.lo PPFC win_lock_f08.lo PPFC win_lock_all_f08.lo PPFC win_post_f08.lo PPFC win_set_attr_f08.lo PPFC win_set_errhandler_f08.lo PPFC win_set_name_f08.lo PPFC win_shared_query_f08.lo PPFC win_start_f08.lo PPFC win_sync_f08.lo PPFC win_test_f08.lo PPFC win_unlock_f08.lo PPFC win_unlock_all_f08.lo PPFC win_wait_f08.lo PPFC file_call_errhandler_f08.lo PPFC file_close_f08.lo PPFC file_create_errhandler_f08.lo PPFC file_delete_f08.lo PPFC file_get_amode_f08.lo PPFC file_get_atomicity_f08.lo PPFC file_get_byte_offset_f08.lo PPFC file_get_errhandler_f08.lo PPFC file_get_group_f08.lo PPFC file_get_info_f08.lo PPFC file_get_position_f08.lo PPFC file_get_position_shared_f08.lo PPFC file_get_size_f08.lo PPFC file_get_type_extent_f08.lo PPFC file_get_view_f08.lo PPFC file_iread_at_f08.lo PPFC file_iread_f08.lo PPFC file_iread_shared_f08.lo PPFC file_iwrite_at_f08.lo PPFC file_iwrite_f08.lo PPFC file_iwrite_shared_f08.lo PPFC file_open_f08.lo PPFC file_preallocate_f08.lo PPFC file_read_all_begin_f08.lo PPFC file_read_all_end_f08.lo PPFC file_read_all_f08.lo PPFC file_read_at_all_begin_f08.lo PPFC file_read_at_all_end_f08.lo PPFC file_read_at_all_f08.lo PPFC file_read_at_f08.lo PPFC file_read_f08.lo PPFC file_read_ordered_begin_f08.lo PPFC file_read_ordered_end_f08.lo PPFC file_read_ordered_f08.lo PPFC file_read_shared_f08.lo PPFC file_seek_f08.lo PPFC file_seek_shared_f08.lo PPFC file_set_atomicity_f08.lo PPFC file_set_errhandler_f08.lo PPFC file_set_info_f08.lo PPFC file_set_size_f08.lo PPFC file_set_view_f08.lo PPFC file_sync_f08.lo PPFC file_write_all_begin_f08.lo PPFC file_write_all_end_f08.lo PPFC file_write_all_f08.lo PPFC file_write_at_all_begin_f08.lo PPFC file_write_at_all_end_f08.lo PPFC file_write_at_all_f08.lo PPFC file_write_at_f08.lo PPFC file_write_f08.lo PPFC file_write_ordered_begin_f08.lo PPFC file_write_ordered_end_f08.lo PPFC file_write_ordered_f08.lo PPFC file_write_shared_f08.lo PPFC register_datarep_f08.lo PPFC profile/pabort_f08.lo PPFC profile/paccumulate_f08.lo PPFC profile/padd_error_class_f08.lo PPFC profile/padd_error_code_f08.lo PPFC profile/padd_error_string_f08.lo PPFC profile/pallgather_f08.lo PPFC profile/pallgatherv_f08.lo PPFC profile/palloc_mem_f08.lo PPFC profile/pallreduce_f08.lo PPFC profile/palltoall_f08.lo PPFC profile/palltoallv_f08.lo PPFC profile/palltoallw_f08.lo PPFC profile/pbarrier_f08.lo PPFC profile/pbcast_f08.lo PPFC profile/pbsend_f08.lo PPFC profile/pbsend_init_f08.lo PPFC profile/pbuffer_attach_f08.lo PPFC profile/pbuffer_detach_f08.lo PPFC profile/pcancel_f08.lo PPFC profile/pcart_coords_f08.lo PPFC profile/pcart_create_f08.lo PPFC profile/pcartdim_get_f08.lo PPFC profile/pcart_get_f08.lo PPFC profile/pcart_map_f08.lo PPFC profile/pcart_rank_f08.lo PPFC profile/pcart_shift_f08.lo PPFC profile/pcart_sub_f08.lo PPFC profile/pclose_port_f08.lo PPFC profile/pcomm_accept_f08.lo PPFC profile/pcomm_call_errhandler_f08.lo PPFC profile/pcomm_compare_f08.lo PPFC profile/pcomm_connect_f08.lo PPFC profile/pcomm_create_errhandler_f08.lo PPFC profile/pcomm_create_f08.lo PPFC profile/pcomm_create_group_f08.lo PPFC profile/pcomm_create_keyval_f08.lo PPFC profile/pcomm_delete_attr_f08.lo PPFC profile/pcomm_disconnect_f08.lo PPFC profile/pcomm_dup_f08.lo PPFC profile/pcomm_dup_with_info_f08.lo PPFC profile/pcomm_idup_f08.lo PPFC profile/pcomm_free_f08.lo PPFC profile/pcomm_free_keyval_f08.lo PPFC profile/pcomm_get_attr_f08.lo PPFC profile/pcomm_get_errhandler_f08.lo PPFC profile/pcomm_get_info_f08.lo PPFC profile/pcomm_get_name_f08.lo PPFC profile/pcomm_get_parent_f08.lo PPFC profile/pcomm_group_f08.lo PPFC profile/pcomm_join_f08.lo PPFC profile/pcomm_rank_f08.lo PPFC profile/pcomm_remote_group_f08.lo PPFC profile/pcomm_remote_size_f08.lo PPFC profile/pcomm_set_attr_f08.lo PPFC profile/pcomm_set_errhandler_f08.lo PPFC profile/pcomm_set_info_f08.lo PPFC profile/pcomm_set_name_f08.lo PPFC profile/pcomm_size_f08.lo PPFC profile/pcomm_spawn_f08.lo PPFC profile/pcomm_split_f08.lo PPFC profile/pcomm_spawn_multiple_f08.lo PPFC profile/pcomm_split_type_f08.lo PPFC profile/pcomm_test_inter_f08.lo PPFC profile/pcompare_and_swap_f08.lo PPFC profile/pdims_create_f08.lo PPFC profile/pdist_graph_create_adjacent_f08.lo PPFC profile/pdist_graph_create_f08.lo PPFC profile/pdist_graph_neighbors_count_f08.lo PPFC profile/pdist_graph_neighbors_f08.lo PPFC profile/perrhandler_free_f08.lo PPFC profile/perror_class_f08.lo PPFC profile/perror_string_f08.lo PPFC profile/pexscan_f08.lo PPFC profile/pf_sync_reg_f08.lo PPFC profile/pfetch_and_op_f08.lo PPFC profile/pfinalized_f08.lo PPFC profile/pfinalize_f08.lo PPFC profile/pfree_mem_f08.lo PPFC profile/pgather_f08.lo PPFC profile/pgatherv_f08.lo PPFC profile/pget_accumulate_f08.lo PPFC profile/pget_address_f08.lo PPFC profile/pget_count_f08.lo PPFC profile/pget_elements_f08.lo PPFC profile/pget_f08.lo PPFC profile/pget_elements_x_f08.lo PPFC profile/pget_processor_name_f08.lo PPFC profile/pget_version_f08.lo PPFC profile/pgraph_create_f08.lo PPFC profile/pgraphdims_get_f08.lo PPFC profile/pgraph_get_f08.lo PPFC profile/pgraph_map_f08.lo PPFC profile/pgraph_neighbors_count_f08.lo PPFC profile/pgraph_neighbors_f08.lo PPFC profile/pgrequest_complete_f08.lo PPFC profile/pgrequest_start_f08.lo PPFC profile/pgroup_compare_f08.lo PPFC profile/pgroup_difference_f08.lo PPFC profile/pgroup_excl_f08.lo PPFC profile/pgroup_free_f08.lo PPFC profile/pgroup_incl_f08.lo PPFC profile/pgroup_intersection_f08.lo PPFC profile/pgroup_range_excl_f08.lo PPFC profile/pgroup_range_incl_f08.lo PPFC profile/pgroup_rank_f08.lo PPFC profile/pgroup_size_f08.lo PPFC profile/pgroup_translate_ranks_f08.lo PPFC profile/pgroup_union_f08.lo PPFC profile/piallgather_f08.lo PPFC profile/piallgatherv_f08.lo PPFC profile/piallreduce_f08.lo PPFC profile/pialltoall_f08.lo PPFC profile/pialltoallv_f08.lo PPFC profile/pialltoallw_f08.lo PPFC profile/pibarrier_f08.lo PPFC profile/pibcast_f08.lo PPFC profile/pibsend_f08.lo PPFC profile/pigather_f08.lo PPFC profile/pigatherv_f08.lo PPFC profile/piexscan_f08.lo PPFC profile/pimprobe_f08.lo PPFC profile/pimrecv_f08.lo PPFC profile/pineighbor_allgather_f08.lo PPFC profile/pineighbor_allgatherv_f08.lo PPFC profile/pineighbor_alltoall_f08.lo PPFC profile/pineighbor_alltoallv_f08.lo PPFC profile/pineighbor_alltoallw_f08.lo PPFC profile/pinfo_create_f08.lo PPFC profile/pinfo_delete_f08.lo PPFC profile/pinfo_dup_f08.lo PPFC profile/pinfo_get_f08.lo PPFC profile/pinfo_free_f08.lo PPFC profile/pinfo_get_nkeys_f08.lo PPFC profile/pinfo_get_nthkey_f08.lo PPFC profile/pinfo_get_valuelen_f08.lo PPFC profile/pinfo_set_f08.lo PPFC profile/pinit_f08.lo PPFC profile/pinitialized_f08.lo PPFC profile/pinit_thread_f08.lo PPFC profile/pintercomm_create_f08.lo PPFC profile/pintercomm_merge_f08.lo PPFC profile/piprobe_f08.lo PPFC profile/pirecv_f08.lo PPFC profile/pireduce_f08.lo PPFC profile/pireduce_scatter_f08.lo PPFC profile/pireduce_scatter_block_f08.lo PPFC profile/pirsend_f08.lo PPFC profile/piscan_f08.lo PPFC profile/piscatter_f08.lo PPFC profile/piscatterv_f08.lo PPFC profile/pisend_f08.lo PPFC profile/pissend_f08.lo PPFC profile/pis_thread_main_f08.lo PPFC profile/plookup_name_f08.lo PPFC profile/pmprobe_f08.lo PPFC profile/pmrecv_f08.lo PPFC profile/pneighbor_allgather_f08.lo PPFC profile/pneighbor_allgatherv_f08.lo PPFC profile/pneighbor_alltoall_f08.lo PPFC profile/pneighbor_alltoallv_f08.lo PPFC profile/pneighbor_alltoallw_f08.lo PPFC profile/pop_commutative_f08.lo PPFC profile/pop_create_f08.lo PPFC profile/popen_port_f08.lo PPFC profile/pop_free_f08.lo PPFC profile/ppack_external_f08.lo PPFC profile/ppack_external_size_f08.lo PPFC profile/ppack_f08.lo PPFC profile/ppack_size_f08.lo PPFC profile/ppcontrol_f08.lo PPFC profile/pprobe_f08.lo PPFC profile/ppublish_name_f08.lo PPFC profile/pput_f08.lo PPFC profile/pquery_thread_f08.lo PPFC profile/praccumulate_f08.lo PPFC profile/precv_f08.lo PPFC profile/precv_init_f08.lo PPFC profile/preduce_f08.lo PPFC profile/preduce_local_f08.lo PPFC profile/preduce_scatter_f08.lo PPFC profile/preduce_scatter_block_f08.lo PPFC profile/prequest_free_f08.lo PPFC profile/prequest_get_status_f08.lo PPFC profile/prget_f08.lo PPFC profile/prget_accumulate_f08.lo PPFC profile/prsend_f08.lo PPFC profile/prput_f08.lo PPFC profile/prsend_init_f08.lo PPFC profile/pscan_f08.lo PPFC profile/pscatter_f08.lo PPFC profile/pscatterv_f08.lo PPFC profile/psend_f08.lo PPFC profile/psend_init_f08.lo PPFC profile/psendrecv_f08.lo PPFC profile/psendrecv_replace_f08.lo PPFC profile/pssend_init_f08.lo PPFC profile/pssend_f08.lo PPFC profile/pstartall_f08.lo PPFC profile/pstart_f08.lo PPFC profile/pstatus_set_cancelled_f08.lo PPFC profile/pstatus_set_elements_f08.lo PPFC profile/pstatus_set_elements_x_f08.lo PPFC profile/ptestall_f08.lo PPFC profile/ptestany_f08.lo PPFC profile/ptest_cancelled_f08.lo PPFC profile/ptest_f08.lo PPFC profile/ptestsome_f08.lo PPFC profile/ptopo_test_f08.lo PPFC profile/ptype_commit_f08.lo PPFC profile/ptype_contiguous_f08.lo PPFC profile/ptype_create_darray_f08.lo PPFC profile/ptype_create_f90_complex_f08.lo PPFC profile/ptype_create_f90_integer_f08.lo PPFC profile/ptype_create_f90_real_f08.lo PPFC profile/ptype_create_hindexed_f08.lo PPFC profile/ptype_create_hvector_f08.lo PPFC profile/ptype_create_indexed_block_f08.lo PPFC profile/ptype_create_hindexed_block_f08.lo PPFC profile/ptype_create_struct_f08.lo PPFC profile/ptype_create_resized_f08.lo PPFC profile/ptype_create_subarray_f08.lo PPFC profile/ptype_delete_attr_f08.lo PPFC profile/ptype_create_keyval_f08.lo PPFC profile/ptype_dup_f08.lo PPFC profile/ptype_free_f08.lo PPFC profile/ptype_free_keyval_f08.lo PPFC profile/ptype_get_attr_f08.lo PPFC profile/ptype_get_contents_f08.lo PPFC profile/ptype_get_envelope_f08.lo PPFC profile/ptype_get_extent_f08.lo PPFC profile/ptype_get_extent_x_f08.lo PPFC profile/ptype_get_name_f08.lo PPFC profile/ptype_get_true_extent_f08.lo PPFC profile/ptype_get_true_extent_x_f08.lo PPFC profile/ptype_indexed_f08.lo PPFC profile/ptype_match_size_f08.lo PPFC profile/ptype_set_attr_f08.lo PPFC profile/ptype_set_name_f08.lo PPFC profile/ptype_size_f08.lo PPFC profile/ptype_size_x_f08.lo PPFC profile/ptype_vector_f08.lo PPFC profile/punpack_external_f08.lo PPFC profile/punpack_f08.lo PPFC profile/punpublish_name_f08.lo PPFC profile/pwaitall_f08.lo PPFC profile/pwaitany_f08.lo PPFC profile/pwait_f08.lo PPFC profile/pwaitsome_f08.lo PPFC profile/pwin_allocate_f08.lo PPFC profile/pwin_allocate_shared_f08.lo PPFC profile/pwin_call_errhandler_f08.lo PPFC profile/pwin_complete_f08.lo PPFC profile/pwin_create_f08.lo PPFC profile/pwin_create_errhandler_f08.lo PPFC profile/pwin_create_keyval_f08.lo PPFC profile/pwin_delete_attr_f08.lo PPFC profile/pwin_fence_f08.lo PPFC profile/pwin_flush_f08.lo PPFC profile/pwin_flush_all_f08.lo PPFC profile/pwin_flush_local_f08.lo PPFC profile/pwin_flush_local_all_f08.lo PPFC profile/pwin_free_f08.lo PPFC profile/pwin_free_keyval_f08.lo PPFC profile/pwin_get_attr_f08.lo PPFC profile/pwin_get_errhandler_f08.lo PPFC profile/pwin_get_group_f08.lo PPFC profile/pwin_get_name_f08.lo PPFC profile/pwin_lock_f08.lo PPFC profile/pwin_lock_all_f08.lo PPFC profile/pwin_post_f08.lo PPFC profile/pwin_set_attr_f08.lo PPFC profile/pwin_set_errhandler_f08.lo PPFC profile/pwin_set_name_f08.lo PPFC profile/pwin_shared_query_f08.lo PPFC profile/pwin_start_f08.lo PPFC profile/pwin_sync_f08.lo PPFC profile/pwin_test_f08.lo PPFC profile/pwin_unlock_f08.lo PPFC profile/pwin_unlock_all_f08.lo PPFC profile/pwin_wait_f08.lo PPFC profile/pfile_call_errhandler_f08.lo PPFC profile/pfile_close_f08.lo PPFC profile/pfile_create_errhandler_f08.lo PPFC profile/pfile_delete_f08.lo PPFC profile/pfile_get_amode_f08.lo PPFC profile/pfile_get_atomicity_f08.lo PPFC profile/pfile_get_byte_offset_f08.lo PPFC profile/pfile_get_errhandler_f08.lo PPFC profile/pfile_get_group_f08.lo PPFC profile/pfile_get_info_f08.lo PPFC profile/pfile_get_position_f08.lo PPFC profile/pfile_get_position_shared_f08.lo PPFC profile/pfile_get_size_f08.lo PPFC profile/pfile_get_type_extent_f08.lo PPFC profile/pfile_get_view_f08.lo PPFC profile/pfile_iread_at_f08.lo PPFC profile/pfile_iread_f08.lo PPFC profile/pfile_iread_shared_f08.lo PPFC profile/pfile_iwrite_at_f08.lo PPFC profile/pfile_iwrite_f08.lo PPFC profile/pfile_iwrite_shared_f08.lo PPFC profile/pfile_open_f08.lo PPFC profile/pfile_preallocate_f08.lo PPFC profile/pfile_read_all_begin_f08.lo PPFC profile/pfile_read_all_end_f08.lo PPFC profile/pfile_read_all_f08.lo PPFC profile/pfile_read_at_all_begin_f08.lo PPFC profile/pfile_read_at_all_end_f08.lo PPFC profile/pfile_read_at_all_f08.lo PPFC profile/pfile_read_at_f08.lo PPFC profile/pfile_read_f08.lo PPFC profile/pfile_read_ordered_begin_f08.lo PPFC profile/pfile_read_ordered_end_f08.lo PPFC profile/pfile_read_ordered_f08.lo PPFC profile/pfile_read_shared_f08.lo PPFC profile/pfile_seek_f08.lo PPFC profile/pfile_seek_shared_f08.lo PPFC profile/pfile_set_atomicity_f08.lo PPFC profile/pfile_set_errhandler_f08.lo PPFC profile/pfile_set_info_f08.lo PPFC profile/pfile_set_size_f08.lo PPFC profile/pfile_set_view_f08.lo PPFC profile/pfile_write_all_begin_f08.lo PPFC profile/pfile_sync_f08.lo PPFC profile/pfile_write_all_end_f08.lo PPFC profile/pfile_write_all_f08.lo PPFC profile/pfile_write_at_all_begin_f08.lo PPFC profile/pfile_write_at_all_end_f08.lo PPFC profile/pfile_write_at_all_f08.lo PPFC profile/pfile_write_at_f08.lo PPFC profile/pfile_write_f08.lo PPFC profile/pfile_write_ordered_begin_f08.lo PPFC profile/pfile_write_ordered_end_f08.lo PPFC profile/pfile_write_ordered_f08.lo PPFC profile/pfile_write_shared_f08.lo PPFC profile/pregister_datarep_f08.lo FCLD libmpi_usempif08.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-f08' Making all in mpi/fortran/mpiext make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpiext' PPFC mpi-ext-module.lo PPFC mpi-f08-ext-module.lo FCLD libforce_usempi_module_to_be_built.la FCLD libforce_usempif08_module_to_be_built.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpiext' Making all in contrib/libompitrace make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/contrib/libompitrace' CC abort.lo CC accumulate.lo CC add_error_class.lo CC add_error_code.lo CC add_error_string.lo CC address.lo CC allgather.lo CC allgatherv.lo CC alloc_mem.lo CC allreduce.lo CC bcast.lo CC barrier.lo CC finalize.lo CC init.lo CC isend.lo CC recv.lo CC reduce.lo CC request_free.lo CC send.lo CC sendrecv.lo CCLD libompitrace.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/contrib/libompitrace' Making all in tools/ompi_info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/ompi_info' CC ompi_info.o CC param.o CCLD ompi_info make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/ompi_info' Making all in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/wrappers' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/wrappers' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making all in oshmem make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Making all in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' /usr/bin/make all-am make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' Making all in shmem/c make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c/profile' CC pshmem_init.lo CC pshmem_finalize.lo CC pshmem_free.lo CC pshmem_alloc.lo CC pshmem_realloc.lo CC pshmem_align.lo CC pshmem_query.lo CC pshmem_p.lo CC pshmem_put.lo CC pshmem_g.lo CC pshmem_get.lo CC pshmem_broadcast.lo CC pshmem_collect.lo CC pshmem_ptr.lo CC pshmem_pe_accessible.lo CC pshmem_addr_accessible.lo CC pshmem_barrier.lo CC pshmem_fence.lo CC pshmem_quiet.lo CC pshmem_wait.lo CC pshmem_iget.lo CC pshmem_iput.lo CC pshmem_udcflush.lo CC pshmem_udcflush_line.lo CC pshmem_set_cache_inv.lo CC pshmem_set_cache_line_inv.lo CC pshmem_clear_cache_inv.lo CC pshmem_clear_cache_line_inv.lo CC pshmem_reduce.lo CC pshmem_swap.lo CC pshmem_cswap.lo CC pshmem_fadd.lo CC pshmem_finc.lo CC pshmem_add.lo CC pshmem_inc.lo CC pshmem_clear_lock.lo CC pshmem_set_lock.lo CC pshmem_test_lock.lo CCLD liboshmem_c_pshmem.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' CC shmem_lock.lo CC globalexit.lo CCLD liboshmem_c.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' Making all in shmem/fortran make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran/profile' CC pstart_pes_f.lo CC pnum_pes_f.lo CC pmy_pe_f.lo CC pshmem_barrier_all_f.lo CC pshpalloc_f.lo CC pshpdeallc_f.lo CC pshpclmove_f.lo CC pshmem_ptr_f.lo CC pshmem_pe_accessible_f.lo CC pshmem_addr_accessible_f.lo CC pshmem_put_f.lo CC pshmem_character_put_f.lo CC pshmem_double_put_f.lo CC pshmem_complex_put_f.lo CC pshmem_logical_put_f.lo CC pshmem_integer_put_f.lo CC pshmem_real_put_f.lo CC pshmem_put4_f.lo CC pshmem_put8_f.lo CC pshmem_put32_f.lo CC pshmem_put64_f.lo CC pshmem_put128_f.lo CC pshmem_putmem_f.lo CC pshmem_complex_iput_f.lo CC pshmem_double_iput_f.lo CC pshmem_integer_iput_f.lo CC pshmem_iput128_f.lo CC pshmem_iput32_f.lo CC pshmem_iput4_f.lo CC pshmem_iput64_f.lo CC pshmem_iput8_f.lo CC pshmem_logical_iput_f.lo CC pshmem_character_get_f.lo CC pshmem_real_iput_f.lo CC pshmem_complex_get_f.lo CC pshmem_double_get_f.lo CC pshmem_get128_f.lo CC pshmem_get32_f.lo CC pshmem_get4_f.lo CC pshmem_get64_f.lo CC pshmem_get8_f.lo CC pshmem_getmem_f.lo CC pshmem_integer_get_f.lo CC pshmem_logical_get_f.lo CC pshmem_real_get_f.lo CC pshmem_complex_iget_f.lo CC pshmem_double_iget_f.lo CC pshmem_iget128_f.lo CC pshmem_iget32_f.lo CC pshmem_iget4_f.lo CC pshmem_iget64_f.lo CC pshmem_iget8_f.lo CC pshmem_integer_iget_f.lo CC pshmem_logical_iget_f.lo CC pshmem_real_iget_f.lo CC pshmem_swap_f.lo CC pshmem_int4_swap_f.lo CC pshmem_int8_swap_f.lo CC pshmem_real4_swap_f.lo CC pshmem_real8_swap_f.lo CC pshmem_int4_cswap_f.lo CC pshmem_int8_cswap_f.lo CC pshmem_int4_fadd_f.lo CC pshmem_int8_fadd_f.lo CC pshmem_int4_finc_f.lo CC pshmem_int8_finc_f.lo CC pshmem_int4_add_f.lo CC pshmem_int8_add_f.lo CC pshmem_int4_wait_f.lo CC pshmem_int8_wait_f.lo CC pshmem_wait_f.lo CC pshmem_int4_wait_until_f.lo CC pshmem_int8_wait_until_f.lo CC pshmem_wait_until_f.lo CC pshmem_barrier_f.lo CC pshmem_and_to_all_f.lo CC pshmem_or_to_all_f.lo CC pshmem_xor_to_all_f.lo CC pshmem_max_to_all_f.lo CC pshmem_min_to_all_f.lo CC pshmem_sum_to_all_f.lo CC pshmem_prod_to_all_f.lo CC pshmem_collect_f.lo CC pshmem_broadcast_f.lo CC pshmem_lock_f.lo CC pshmem_cache_f.lo CC pshmem_int4_inc_f.lo CC pshmem_int8_inc_f.lo CC pshmem_quiet_f.lo CC pshmem_fence_f.lo CCLD liboshmem_fortran_pshmem.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' CC shmem_finalize_f.lo CCLD liboshmem_fortran.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' Making all in mca/atomic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic' CC base/atomic_base_frame.lo CC base/atomic_base_available.lo CC base/atomic_base_select.lo CCLD libmca_atomic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic' Making all in mca/memheap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap' CC base/memheap_base_frame.lo CC base/memheap_base_select.lo CC base/memheap_base_alloc.lo CC base/memheap_base_static.lo CC base/memheap_base_register.lo CC base/memheap_base_mkey.lo CCLD libmca_memheap.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap' Making all in mca/scoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll' CC base/scoll_base_frame.lo CC base/scoll_base_available.lo CC base/scoll_base_select.lo CCLD libmca_scoll.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll' Making all in mca/spml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml' CC base/spml_base_frame.lo CC base/spml_base_select.lo CC base/spml_base_request.lo CC base/spml_base_atomicreq.lo CC base/spml_base_getreq.lo CC base/spml_base_putreq.lo CC base/spml_base.lo CCLD libmca_spml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml' Making all in mca/sshmem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem' CC base/sshmem_base_close.lo CC base/sshmem_base_select.lo CC base/sshmem_base_open.lo CC base/sshmem_base_wrappers.lo CCLD libmca_sshmem.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem' Making all in mca/atomic/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic/basic' CC atomic_basic_module.lo CC atomic_basic_component.lo CC atomic_basic_fadd.lo CC atomic_basic_cswap.lo CCLD libmca_atomic_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic/basic' Making all in mca/memheap/ptmalloc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/ptmalloc' CC malloc.lo CC memheap_ptmalloc.lo CC memheap_ptmalloc_component.lo CCLD libmca_memheap_ptmalloc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/ptmalloc' Making all in mca/memheap/buddy make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/buddy' CC memheap_buddy.lo CC memheap_buddy_component.lo CCLD libmca_memheap_buddy.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/buddy' Making all in mca/scoll/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/basic' CC scoll_basic_module.lo CC scoll_basic_component.lo CC scoll_basic_barrier.lo CC scoll_basic_broadcast.lo CC scoll_basic_collect.lo CC scoll_basic_reduce.lo CCLD libmca_scoll_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/basic' Making all in mca/scoll/mpi make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/mpi' CC scoll_mpi_module.lo CC scoll_mpi_component.lo CC scoll_mpi_ops.lo CCLD libmca_scoll_mpi.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/mpi' Making all in mca/spml/yoda make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml/yoda' CC spml_yoda.lo CC spml_yoda_component.lo CC spml_yoda_putreq.lo CC spml_yoda_getreq.lo CCLD libmca_spml_yoda.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml/yoda' Making all in mca/sshmem/mmap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/mmap' CC sshmem_mmap_component.lo CC sshmem_mmap_module.lo CCLD libmca_sshmem_mmap.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/mmap' Making all in mca/sshmem/sysv make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/sysv' CC sshmem_sysv_component.lo CC sshmem_sysv_module.lo CCLD libmca_sshmem_sysv.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/sysv' Making all in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' CC op/op.lo CC proc/proc.lo CC proc/proc_group_cache.lo CC request/request.lo CC runtime/oshmem_shmem_init.lo CC runtime/oshmem_shmem_finalize.lo CC runtime/oshmem_shmem_abort.lo CC runtime/oshmem_shmem_params.lo CC runtime/oshmem_shmem_exchange.lo CC runtime/oshmem_info_support.lo CC util/oshmem_util.lo CCLD liboshmem.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Making all in tools/oshmem_info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/tools/oshmem_info' CC oshmem_info.o CC param.o CCLD oshmem_info Makefile:1671: recipe for target 'oshmem_info' failed make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/tools/oshmem_info' Makefile:2000: recipe for target 'all-recursive' failed make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Makefile:1698: recipe for target 'all-recursive' failed **** Configure header /tmp/petsc-9GuV4Y/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_INTTYPES_H #define PETSC_HAVE_INTTYPES_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_USING_F90FREEFORM #define PETSC_USING_F90FREEFORM 1 #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LOG2 #define PETSC_HAVE_LOG2 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "linux-gnu-x86_64" #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_HAVE_ISNORMAL #define PETSC_HAVE_ISNORMAL 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_HAVE__GFORTRAN_IARGC #define PETSC_HAVE__GFORTRAN_IARGC 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_MALLOC_COALESCED #define PETSC_USE_MALLOC_COALESCED 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_F #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC__DEFAULT_SOURCE #define PETSC__DEFAULT_SOURCE 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GFORTRAN_IARGC #define PETSC_HAVE_GFORTRAN_IARGC 1 #endif #endif **** C specific Configure header /tmp/petsc-9GuV4Y/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make; make install on OPENMPI: Could not execute "cd /home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5 && /usr/bin/make -j 7 ": Making all in config make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/config' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/config' Making all in contrib make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/contrib' make[1]: Nothing to be done for 'all'. make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/contrib' Making all in opal make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making all in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' /usr/bin/make all-am make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/include' Making all in asm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/asm' rm -f atomic-asm.S CC asm.lo ln -s "../../opal/asm/generated/atomic-amd64-linux.s" atomic-asm.S CPPAS atomic-asm.lo CCLD libasm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/asm' Making all in datatype make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/datatype' CC libdatatype_reliable_la-opal_datatype_pack.lo CC libdatatype_reliable_la-opal_datatype_unpack.lo CC opal_convertor.lo CC opal_convertor_raw.lo CC opal_copy_functions.lo CC opal_copy_functions_heterogeneous.lo CC opal_datatype_add.lo CC opal_datatype_clone.lo CC opal_datatype_copy.lo CC opal_datatype_create.lo CC opal_datatype_create_contiguous.lo CC opal_datatype_dump.lo CC opal_datatype_destroy.lo CC opal_datatype_fake_stack.lo CC opal_datatype_get_count.lo CC opal_datatype_module.lo CC opal_datatype_optimize.lo CC opal_datatype_pack.lo CC opal_datatype_position.lo CC opal_datatype_resize.lo CC opal_datatype_unpack.lo CCLD libdatatype_reliable.la CCLD libdatatype.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/datatype' Making all in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/etc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/etc' Making all in util make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' Making all in keyval make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util/keyval' CC keyval_lex.lo CCLD libopalutilkeyval.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util/keyval' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' CC fd.lo CC alfg.lo CC arch.lo CC argv.lo CC basename.lo CC cmd_line.lo CC crc.lo CC convert.lo CC daemon_init.lo CC error.lo CC few.lo CC if.lo CC keyval_parse.lo CC malloc.lo CC net.lo CC numtostr.lo CC opal_environ.lo CC opal_getcwd.lo CC opal_pty.lo CC os_dirpath.lo CC os_path.lo CC output.lo CC path.lo CC printf.lo CC qsort.lo CC show_help.lo CC show_help_lex.lo CC stacktrace.lo CC strncpy.lo CC sys_limits.lo CC uri.lo CCLD libopalutil.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/util' Making all in mca/base make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/base' CC mca_base_close.lo CC mca_base_cmd_line.lo CC mca_base_component_compare.lo CC mca_base_component_find.lo CC mca_base_component_repository.lo CC mca_base_components_open.lo CC mca_base_components_close.lo CC mca_base_components_select.lo CC mca_base_list.lo CC mca_base_open.lo CC mca_base_param.lo CC mca_base_var.lo CC mca_base_pvar.lo CC mca_base_var_enum.lo CC mca_base_var_group.lo CC mca_base_parse_paramfile.lo CC mca_base_components_register.lo CC mca_base_framework.lo CCLD libmca_base.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/base' Making all in mca/common make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/common' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/common' Making all in mca/backtrace make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace' CC base/backtrace_component.lo CCLD libmca_backtrace.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace' Making all in mca/compress make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress' CC base/compress_base_open.lo CC base/compress_base_close.lo CC base/compress_base_select.lo CC base/compress_base_fns.lo CCLD libmca_compress.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress' Making all in mca/crs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs' CC base/crs_base_open.lo CC base/crs_base_close.lo CC base/crs_base_select.lo CC base/crs_base_fns.lo CCLD libmca_crs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs' Making all in mca/db make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db' CC base/db_base_frame.lo CC base/db_base_select.lo CC base/db_base_fns.lo CCLD libmca_db.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db' Making all in mca/dl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl' CC base/dl_base_open.lo CC base/dl_base_close.lo CC base/dl_base_select.lo CC base/dl_base_fns.lo CCLD libmca_dl.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl' Making all in mca/event make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event' CC base/event_base_frame.lo CCLD libmca_event.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event' Making all in mca/hwloc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc' CC base/hwloc_base_frame.lo CC base/hwloc_base_dt.lo CC base/hwloc_base_util.lo CC base/hwloc_base_maffinity.lo CCLD libmca_hwloc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc' Making all in mca/if make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if' CC base/if_base_components.lo CCLD libmca_if.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if' Making all in mca/installdirs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs' CC base/installdirs_base_components.lo CC base/installdirs_base_expand.lo CCLD libmca_installdirs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs' Making all in mca/memchecker make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memchecker' CC base/memchecker_base_open.lo CC base/memchecker_base_select.lo CC base/memchecker_base_wrappers.lo CCLD libmca_memchecker.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memchecker' Making all in mca/memcpy make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memcpy' CC base/memcpy_base_open.lo CCLD libmca_memcpy.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memcpy' Making all in mca/memory make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memory' CC base/memory_base_open.lo CC base/memory_base_empty.lo CCLD libmca_memory.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/memory' Making all in mca/pstat make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat' CC base/pstat_base_select.lo CC base/pstat_base_open.lo CCLD libmca_pstat.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat' Making all in mca/sec make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec' CC base/sec_base_frame.lo CC base/sec_base_select.lo CCLD libmca_sec.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec' Making all in mca/shmem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem' CC base/shmem_base_close.lo CC base/shmem_base_select.lo CC base/shmem_base_open.lo CC base/shmem_base_wrappers.lo CCLD libmca_shmem.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem' Making all in mca/timer make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer' CC base/timer_base_open.lo CCLD libmca_timer.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer' Making all in mca/backtrace/execinfo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace/execinfo' CC backtrace_execinfo.lo CC backtrace_execinfo_component.lo CCLD libmca_backtrace_execinfo.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/backtrace/execinfo' Making all in mca/compress/gzip make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/gzip' CC compress_gzip_component.lo CC compress_gzip_module.lo CCLD libmca_compress_gzip.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/gzip' Making all in mca/compress/bzip make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/bzip' CC compress_bzip_component.lo CC compress_bzip_module.lo CCLD libmca_compress_bzip.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/compress/bzip' Making all in mca/crs/none make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs/none' CC crs_none_component.lo CC crs_none_module.lo CCLD libmca_crs_none.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/crs/none' Making all in mca/db/print make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/print' CC libmca_db_print_la-db_print_component.lo CC libmca_db_print_la-db_print.lo CCLD libmca_db_print.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/print' Making all in mca/db/hash make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/hash' CC db_hash_component.lo CC db_hash.lo CCLD libmca_db_hash.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/db/hash' Making all in mca/dl/dlopen make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl/dlopen' CC dl_dlopen_component.lo CC dl_dlopen_module.lo CCLD libmca_dl_dlopen.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/dl/dlopen' Making all in mca/event/libevent2021 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' Making all in libevent make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' /usr/bin/make all-recursive make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' Making all in . make[5]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT event.lo -MD -MP -MF .deps/event.Tpo -c -o event.lo event.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evthread.lo -MD -MP -MF .deps/evthread.Tpo -c -o evthread.lo evthread.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evmap.lo -MD -MP -MF .deps/evmap.Tpo -c -o evmap.lo evmap.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT log.lo -MD -MP -MF .deps/log.Tpo -c -o log.lo log.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evutil.lo -MD -MP -MF .deps/evutil.Tpo -c -o evutil.lo evutil.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evutil_rand.lo -MD -MP -MF .deps/evutil_rand.Tpo -c -o evutil_rand.lo evutil_rand.c /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT strlcpy.lo -MD -MP -MF .deps/strlcpy.Tpo -c -o strlcpy.lo strlcpy.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT strlcpy.lo -MD -MP -MF .deps/strlcpy.Tpo -c strlcpy.c -o strlcpy.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evthread.lo -MD -MP -MF .deps/evthread.Tpo -c evthread.c -o evthread.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT event.lo -MD -MP -MF .deps/event.Tpo -c event.c -o event.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evmap.lo -MD -MP -MF .deps/evmap.Tpo -c evmap.c -o evmap.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT log.lo -MD -MP -MF .deps/log.Tpo -c log.c -o log.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evutil.lo -MD -MP -MF .deps/evutil.Tpo -c evutil.c -o evutil.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evutil_rand.lo -MD -MP -MF .deps/evutil_rand.Tpo -c evutil_rand.c -o evutil_rand.o mv -f .deps/strlcpy.Tpo .deps/strlcpy.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT select.lo -MD -MP -MF .deps/select.Tpo -c -o select.lo select.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT select.lo -MD -MP -MF .deps/select.Tpo -c select.c -o select.o mv -f .deps/log.Tpo .deps/log.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT poll.lo -MD -MP -MF .deps/poll.Tpo -c -o poll.lo poll.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT poll.lo -MD -MP -MF .deps/poll.Tpo -c poll.c -o poll.o mv -f .deps/evthread.Tpo .deps/evthread.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT epoll.lo -MD -MP -MF .deps/epoll.Tpo -c -o epoll.lo epoll.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT epoll.lo -MD -MP -MF .deps/epoll.Tpo -c epoll.c -o epoll.o mv -f .deps/evutil_rand.Tpo .deps/evutil_rand.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT signal.lo -MD -MP -MF .deps/signal.Tpo -c -o signal.lo signal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT signal.lo -MD -MP -MF .deps/signal.Tpo -c signal.c -o signal.o mv -f .deps/select.Tpo .deps/select.Plo /bin/bash ./libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evthread_pthread.lo -MD -MP -MF .deps/evthread_pthread.Tpo -c -o evthread_pthread.lo evthread_pthread.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I./compat -I./include -I./include -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -MT evthread_pthread.lo -MD -MP -MF .deps/evthread_pthread.Tpo -c evthread_pthread.c -o evthread_pthread.o mv -f .deps/evmap.Tpo .deps/evmap.Plo mv -f .deps/poll.Tpo .deps/poll.Plo mv -f .deps/evthread_pthread.Tpo .deps/evthread_pthread.Plo mv -f .deps/epoll.Tpo .deps/epoll.Plo mv -f .deps/signal.Tpo .deps/signal.Plo mv -f .deps/evutil.Tpo .deps/evutil.Plo mv -f .deps/event.Tpo .deps/event.Plo /bin/bash ./libtool --tag=CC --mode=link gcc -fstack-protector -O3 -march=native -mtune=native -Wall -fno-strict-aliasing -pthread -o libevent.la event.lo evthread.lo evmap.lo log.lo evutil.lo evutil_rand.lo strlcpy.lo select.lo poll.lo epoll.lo signal.lo evthread_pthread.lo libtool: link: /usr/bin/ar cru .libs/libevent.a event.o evthread.o evmap.o log.o evutil.o evutil_rand.o strlcpy.o select.o poll.o epoll.o signal.o evthread_pthread.o libtool: link: ranlib .libs/libevent.a libtool: link: ( cd ".libs" && rm -f "libevent.la" && ln -s "../libevent.la" "libevent.la" ) make[5]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' Making all in include make[5]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent/include' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent/include' make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021/libevent' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' CC libevent2021_component.lo CC libevent2021_module.lo CCLD libmca_event_libevent2021.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/event/libevent2021' Making all in mca/hwloc/hwloc191 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' Making all in hwloc make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' Making all in src make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/src' CC topology.lo CC traversal.lo CC distances.lo CC components.lo CC bind.lo CC bitmap.lo CC pci-common.lo CC diff.lo CC misc.lo CC base64.lo CC topology-noos.lo CC topology-synthetic.lo CC topology-custom.lo CC topology-xml.lo CC topology-xml-nolibxml.lo CC topology-linux.lo CC topology-x86.lo CCLD libhwloc_embedded.la make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/src' Making all in include make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/include' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc/include' make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191/hwloc' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' CC hwloc191_component.lo CCLD libmca_hwloc_hwloc191.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/hwloc/hwloc191' Making all in mca/if/posix_ipv4 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/posix_ipv4' CC if_posix.lo CCLD libmca_if_posix_ipv4.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/posix_ipv4' Making all in mca/if/linux_ipv6 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/linux_ipv6' CC if_linux_ipv6.lo CCLD libmca_if_linux_ipv6.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/if/linux_ipv6' Making all in mca/installdirs/env make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/env' CC opal_installdirs_env.lo CCLD libmca_installdirs_env.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/env' Making all in mca/installdirs/config make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/config' CC opal_installdirs_config.lo CCLD libmca_installdirs_config.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/installdirs/config' Making all in mca/pstat/linux make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat/linux' CC pstat_linux_component.lo CC pstat_linux_module.lo CCLD libmca_pstat_linux.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/pstat/linux' Making all in mca/sec/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec/basic' CC sec_basic_component.lo CC sec_basic.lo CCLD libmca_sec_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/sec/basic' Making all in mca/shmem/mmap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/mmap' CC shmem_mmap_component.lo CC shmem_mmap_module.lo CCLD libmca_shmem_mmap.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/mmap' Making all in mca/shmem/posix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/posix' CC shmem_posix_common_utils.lo CC shmem_posix_component.lo CC shmem_posix_module.lo CCLD libmca_shmem_posix.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/posix' Making all in mca/shmem/sysv make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/sysv' CC shmem_sysv_component.lo CC shmem_sysv_module.lo CCLD libmca_shmem_sysv.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/shmem/sysv' Making all in mca/timer/linux make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer/linux' CC timer_linux_component.lo CCLD libmca_timer_linux.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/mca/timer/linux' Making all in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' CC class/opal_bitmap.lo CC class/opal_free_list.lo CC class/opal_hash_table.lo CC class/opal_hotel.lo CC class/opal_tree.lo CC class/opal_list.lo CC class/opal_object.lo CC class/opal_graph.lo CC class/opal_atomic_lifo.lo CC class/opal_pointer_array.lo CC class/opal_value_array.lo CC class/opal_ring_buffer.lo CC memoryhooks/memory.lo CC runtime/opal_progress.lo CC runtime/opal_finalize.lo CC runtime/opal_init.lo CC runtime/opal_params.lo CC runtime/opal_cr.lo CC runtime/opal_info_support.lo CC threads/condition.lo CC threads/mutex.lo CC threads/thread.lo CC threads/tsd.lo CC dss/dss_internal_functions.lo CC dss/dss_compare.lo CC dss/dss_copy.lo CC dss/dss_dump.lo CC dss/dss_load_unload.lo CC dss/dss_lookup.lo CC dss/dss_pack.lo CC dss/dss_peek.lo CC dss/dss_print.lo CC dss/dss_register.lo CC dss/dss_unpack.lo CC dss/dss_open_close.lo CCLD libopen-pal.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making all in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/tools/wrappers' CC opal_wrapper.o CCLD opal_wrapper make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal/tools/wrappers' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/opal' Making all in orte make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making all in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' /usr/bin/make all-am make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/include' Making all in mca/dfs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs' CC base/dfs_base_select.lo CC base/dfs_base_frame.lo CCLD libmca_dfs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs' Making all in mca/errmgr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr' CC base/errmgr_base_select.lo CC base/errmgr_base_frame.lo CC base/errmgr_base_fns.lo CC base/errmgr_base_tool.lo CCLD libmca_errmgr.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr' Making all in mca/ess make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess' CC base/ess_base_frame.lo CC base/ess_base_select.lo CC base/ess_base_get.lo CC base/ess_base_put.lo CC base/ess_base_std_tool.lo CC base/ess_base_std_app.lo CC base/ess_base_std_orted.lo CC base/ess_base_std_prolog.lo CC base/ess_base_fns.lo CCLD libmca_ess.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess' Making all in mca/filem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem' CC base/filem_base_frame.lo CC base/filem_base_select.lo CC base/filem_base_receive.lo CC base/filem_base_fns.lo CCLD libmca_filem.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem' Making all in mca/grpcomm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm' CC base/grpcomm_base_select.lo CC base/grpcomm_base_frame.lo CC base/grpcomm_base_modex.lo CC base/grpcomm_base_receive.lo CC base/grpcomm_base_xcast.lo CC base/grpcomm_base_rollup.lo CCLD libmca_grpcomm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm' Making all in mca/iof make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof' CC base/iof_base_frame.lo CC base/iof_base_select.lo CC base/iof_base_output.lo CC base/iof_base_setup.lo CCLD libmca_iof.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof' Making all in mca/odls make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls' CC base/odls_base_frame.lo CC base/odls_base_select.lo CC base/odls_base_default_fns.lo CCLD libmca_odls.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls' Making all in mca/oob make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob' CC base/oob_base_stubs.lo CC base/oob_base_frame.lo CC base/oob_base_select.lo CCLD libmca_oob.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob' Making all in mca/plm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm' CC base/plm_base_frame.lo CC base/plm_base_select.lo CC base/plm_base_receive.lo CC base/plm_base_launch_support.lo CC base/plm_base_jobid.lo CC base/plm_base_proxy.lo CC base/plm_base_orted_cmds.lo CCLD libmca_plm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm' Making all in mca/ras make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras' CC base/ras_base_frame.lo CC base/ras_base_select.lo CC base/ras_base_allocate.lo CC base/ras_base_node.lo CCLD libmca_ras.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras' Making all in mca/rmaps make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps' CC base/rmaps_base_frame.lo CC base/rmaps_base_select.lo CC base/rmaps_base_map_job.lo CC base/rmaps_base_support_fns.lo CC base/rmaps_base_ranking.lo CC base/rmaps_base_print_fns.lo CC base/rmaps_base_binding.lo CCLD libmca_rmaps.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps' Making all in mca/rml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml' CC base/rml_base_frame.lo CC base/rml_base_receive.lo CC base/rml_base_contact.lo CC base/rml_base_msg_handlers.lo CCLD libmca_rml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml' Making all in mca/routed make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed' CC base/routed_base_frame.lo CC base/routed_base_fns.lo CCLD libmca_routed.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed' Making all in mca/sensor make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sensor' CC base/sensor_base_frame.lo CC base/sensor_base_select.lo CC base/sensor_base_fns.lo CCLD libmca_sensor.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sensor' Making all in mca/snapc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/snapc' CC base/snapc_base_frame.lo CC base/snapc_base_select.lo CC base/snapc_base_fns.lo CCLD libmca_snapc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/snapc' Making all in mca/sstore make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sstore' CC base/sstore_base_frame.lo CC base/sstore_base_select.lo CC base/sstore_base_fns.lo CCLD libmca_sstore.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/sstore' Making all in mca/state make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state' CC base/state_base_frame.lo CC base/state_base_select.lo CC base/state_base_fns.lo CCLD libmca_state.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state' Making all in mca/dfs/test make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/test' CC dfs_test_component.lo CC dfs_test.lo CCLD libmca_dfs_test.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/test' Making all in mca/dfs/app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/app' CC dfs_app_component.lo CC dfs_app.lo CCLD libmca_dfs_app.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/app' Making all in mca/dfs/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/orted' CC dfs_orted_component.lo CC dfs_orted.lo CCLD libmca_dfs_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/dfs/orted' Making all in mca/errmgr/default_tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_tool' CC errmgr_default_tool_component.lo CC errmgr_default_tool.lo CCLD libmca_errmgr_default_tool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_tool' Making all in mca/errmgr/default_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_hnp' CC errmgr_default_hnp_component.lo CC errmgr_default_hnp.lo CCLD libmca_errmgr_default_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_hnp' Making all in mca/errmgr/default_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_orted' CC errmgr_default_orted_component.lo CC errmgr_default_orted.lo CCLD libmca_errmgr_default_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_orted' Making all in mca/errmgr/default_app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_app' CC errmgr_default_app_component.lo CC errmgr_default_app.lo CCLD libmca_errmgr_default_app.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/errmgr/default_app' Making all in mca/ess/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/tool' CC ess_tool_component.lo CC ess_tool_module.lo CCLD libmca_ess_tool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/tool' Making all in mca/ess/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/hnp' CC ess_hnp_component.lo CC ess_hnp_module.lo CCLD libmca_ess_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/hnp' Making all in mca/ess/singleton make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/singleton' CC ess_singleton_component.lo CC ess_singleton_module.lo CCLD libmca_ess_singleton.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/singleton' Making all in mca/ess/env make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/env' CC ess_env_component.lo CC ess_env_module.lo CCLD libmca_ess_env.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/env' Making all in mca/ess/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/slurm' CC ess_slurm_component.lo CC ess_slurm_module.lo CCLD libmca_ess_slurm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ess/slurm' Making all in mca/filem/raw make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem/raw' CC filem_raw_component.lo CC filem_raw_module.lo CCLD libmca_filem_raw.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/filem/raw' Making all in mca/grpcomm/bad make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm/bad' CC grpcomm_bad_module.lo CC grpcomm_bad_component.lo CCLD libmca_grpcomm_bad.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/grpcomm/bad' Making all in mca/iof/mr_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_orted' CC iof_mrorted.lo CC iof_mrorted_component.lo CC iof_mrorted_read.lo CC iof_mrorted_receive.lo CCLD libmca_iof_mr_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_orted' Making all in mca/iof/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/tool' CC iof_tool.lo CC iof_tool_component.lo CC iof_tool_receive.lo CCLD libmca_iof_tool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/tool' Making all in mca/iof/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/hnp' CC iof_hnp.lo CC iof_hnp_component.lo CC iof_hnp_read.lo CC iof_hnp_send.lo CC iof_hnp_receive.lo CCLD libmca_iof_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/hnp' Making all in mca/iof/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/orted' CC iof_orted.lo CC iof_orted_component.lo CC iof_orted_read.lo CC iof_orted_receive.lo CCLD libmca_iof_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/orted' Making all in mca/iof/mr_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_hnp' CC iof_mrhnp.lo CC iof_mrhnp_component.lo CC iof_mrhnp_read.lo CC iof_mrhnp_receive.lo CCLD libmca_iof_mr_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/iof/mr_hnp' Making all in mca/odls/default make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls/default' CC odls_default_component.lo CC odls_default_module.lo CCLD libmca_odls_default.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/odls/default' Making all in mca/oob/tcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob/tcp' CC oob_tcp_component.lo CC oob_tcp.lo CC oob_tcp_listener.lo CC oob_tcp_common.lo CC oob_tcp_connection.lo CC oob_tcp_sendrecv.lo CCLD libmca_oob_tcp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/oob/tcp' Making all in mca/plm/isolated make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/isolated' CC plm_isolated_component.lo CC plm_isolated.lo CCLD libmca_plm_isolated.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/isolated' Making all in mca/plm/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/slurm' CC plm_slurm_component.lo CC plm_slurm_module.lo CCLD libmca_plm_slurm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/slurm' Making all in mca/plm/rsh make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/rsh' CC plm_rsh_component.lo CC plm_rsh_module.lo CCLD libmca_plm_rsh.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/plm/rsh' Making all in mca/ras/simulator make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/simulator' CC ras_sim_component.lo CC ras_sim_module.lo CCLD libmca_ras_simulator.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/simulator' Making all in mca/ras/loadleveler make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/loadleveler' CC ras_loadleveler_component.lo CC ras_loadleveler_module.lo CCLD libmca_ras_loadleveler.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/loadleveler' Making all in mca/ras/slurm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/slurm' CC ras_slurm_component.lo CC ras_slurm_module.lo CCLD libmca_ras_slurm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/ras/slurm' Making all in mca/rmaps/resilient make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/resilient' CC rmaps_resilient.lo CC rmaps_resilient_component.lo CCLD libmca_rmaps_resilient.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/resilient' Making all in mca/rmaps/seq make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/seq' CC rmaps_seq.lo CC rmaps_seq_component.lo CCLD libmca_rmaps_seq.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/seq' Making all in mca/rmaps/round_robin make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/round_robin' CC rmaps_rr.lo CC rmaps_rr_component.lo CC rmaps_rr_mappers.lo CCLD libmca_rmaps_round_robin.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/round_robin' Making all in mca/rmaps/ppr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/ppr' CC rmaps_ppr.lo CC rmaps_ppr_component.lo CCLD libmca_rmaps_ppr.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/ppr' Making all in mca/rmaps/staged make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/staged' CC rmaps_staged.lo CC rmaps_staged_component.lo CCLD libmca_rmaps_staged.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/staged' Making all in mca/rmaps/mindist make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/mindist' CC rmaps_mindist_module.lo CC rmaps_mindist_component.lo CCLD libmca_rmaps_mindist.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/mindist' Making all in mca/rmaps/lama make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/lama' CC rmaps_lama_module.lo CC rmaps_lama_max_tree.lo CC rmaps_lama_params.lo CC rmaps_lama_component.lo CCLD libmca_rmaps_lama.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/lama' Making all in mca/rmaps/rank_file make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/rank_file' CC rmaps_rank_file.lo CC rmaps_rank_file_component.lo CC rmaps_rank_file_lex.lo CCLD libmca_rmaps_rank_file.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rmaps/rank_file' Making all in mca/rml/oob make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml/oob' CC rml_oob_component.lo CC rml_oob_contact.lo CC rml_oob_exception.lo CC rml_oob_ping.lo CC rml_oob_recv.lo CC rml_oob_send.lo CCLD libmca_rml_oob.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/rml/oob' Making all in mca/routed/direct make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/direct' CC routed_direct.lo CC routed_direct_component.lo CCLD libmca_routed_direct.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/direct' Making all in mca/routed/radix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/radix' CC routed_radix.lo CC routed_radix_component.lo CCLD libmca_routed_radix.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/radix' Making all in mca/routed/debruijn make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/debruijn' CC routed_debruijn.lo CC routed_debruijn_component.lo CCLD libmca_routed_debruijn.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/debruijn' Making all in mca/routed/binomial make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/binomial' CC routed_binomial.lo CC routed_binomial_component.lo CCLD libmca_routed_binomial.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/routed/binomial' Making all in mca/state/app make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/app' CC state_app_component.lo CC state_app.lo CCLD libmca_state_app.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/app' Making all in mca/state/staged_orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_orted' CC state_staged_orted_component.lo CC state_staged_orted.lo CCLD libmca_state_staged_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_orted' Making all in mca/state/staged_hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_hnp' CC state_staged_hnp_component.lo CC state_staged_hnp.lo CCLD libmca_state_staged_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/staged_hnp' Making all in mca/state/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/tool' CC state_tool_component.lo CC state_tool.lo CCLD libmca_state_tool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/tool' Making all in mca/state/hnp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/hnp' CC state_hnp_component.lo CC state_hnp.lo CCLD libmca_state_hnp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/hnp' Making all in mca/state/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/orted' CC state_orted_component.lo CC state_orted.lo CCLD libmca_state_orted.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/orted' Making all in mca/state/novm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/novm' CC state_novm_component.lo CC state_novm.lo CCLD libmca_state_novm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/mca/state/novm' Making all in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/etc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/etc' Making all in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' CC runtime/orte_finalize.lo CC runtime/orte_init.lo CC runtime/orte_locks.lo CC runtime/orte_globals.lo CC runtime/orte_quit.lo CC runtime/data_type_support/orte_dt_compare_fns.lo CC runtime/data_type_support/orte_dt_copy_fns.lo CC runtime/data_type_support/orte_dt_print_fns.lo CC runtime/data_type_support/orte_dt_packing_fns.lo CC runtime/data_type_support/orte_dt_unpacking_fns.lo CC runtime/orte_mca_params.lo CC runtime/orte_wait.lo CC runtime/orte_cr.lo CC runtime/orte_data_server.lo CC runtime/orte_info_support.lo CC util/error_strings.lo CC util/name_fns.lo CC util/proc_info.lo CC util/session_dir.lo CC util/show_help.lo CC util/context_fns.lo CC util/parse_options.lo CC util/pre_condition_transports.lo CC util/hnp_contact.lo CC util/hostfile/hostfile_lex.lo CC util/hostfile/hostfile.lo CC util/comm/comm.lo CC util/dash_host/dash_host.lo CC util/nidmap.lo CC util/regex.lo CC orted/orted_main.lo CC orted/orted_comm.lo CCLD libopen-rte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making all in tools/orte-checkpoint make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-checkpoint' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-checkpoint' Making all in tools/orte-clean make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-clean' CC orte-clean.o CCLD orte-clean make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-clean' Making all in tools/orte-ps make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-ps' CC orte-ps.o CCLD orte-ps make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-ps' Making all in tools/orte-restart make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-restart' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-restart' Making all in tools/orted make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orted' CC orted.o CCLD orted make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orted' Making all in tools/orterun make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orterun' CC main.o CC orterun.o CCLD orterun make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orterun' Making all in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/wrappers' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/wrappers' Making all in tools/orte-top make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-top' CC orte-top.o CCLD orte-top make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-top' Making all in tools/orte-info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-info' CC orte-info.o CC output.o CC param.o CC components.o CC version.o CCLD orte-info make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-info' Making all in tools/orte-migrate make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-migrate' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-migrate' Making all in tools/orte-server make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-server' CC orte-server.o CCLD orte-server make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte/tools/orte-server' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/orte' Making all in ompi make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making all in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' /usr/bin/make all-am make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' ../../ompi/mpi/fortran/base/gen-mpi-sizeof.pl \ --header=mpif-sizeof.h --ierror=mandatory \ --maxrank=7 \ --generate=1 \ --real16=1 \ --complex32=1 make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/include' Making all in datatype make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/datatype' CC ompi_datatype_args.lo CC ompi_datatype_create.lo CC ompi_datatype_create_contiguous.lo CC ompi_datatype_create_indexed.lo CC ompi_datatype_create_struct.lo CC ompi_datatype_create_vector.lo CC ompi_datatype_create_darray.lo CC ompi_datatype_create_subarray.lo CC ompi_datatype_external32.lo CC ompi_datatype_match_size.lo CC ompi_datatype_module.lo CC ompi_datatype_sndrcv.lo CC ompi_datatype_get_elements.lo CCLD libdatatype.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/datatype' Making all in debuggers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/debuggers' CC libdebuggers_la-ompi_debuggers.lo CC ompi_debugger_canary.lo CC libompi_dbg_msgq_la-ompi_msgq_dll.lo CC libompi_dbg_msgq_la-ompi_common_dll.lo CCLD libompi_dbg_msgq.la CCLD libdebuggers.la CCLD libompi_debugger_canary.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/debuggers' Making all in etc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/etc' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/etc' Making all in mpi/c make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c/profile' CC pabort.lo CC padd_error_class.lo CC padd_error_code.lo CC padd_error_string.lo CC paddress.lo CC pallgather.lo CC piallgather.lo CC pallgatherv.lo CC piallgatherv.lo CC palloc_mem.lo CC pallreduce.lo CC piallreduce.lo CC palltoall.lo CC pialltoall.lo CC palltoallv.lo CC pialltoallv.lo CC palltoallw.lo CC pialltoallw.lo CC pattr_delete.lo CC pattr_get.lo CC pattr_put.lo CC pbarrier.lo CC pibarrier.lo CC pbcast.lo CC pibcast.lo CC pbsend.lo CC pbsend_init.lo CC pbuffer_attach.lo CC pcancel.lo CC pbuffer_detach.lo CC pcart_coords.lo CC pcart_create.lo CC pcartdim_get.lo CC pcart_get.lo CC pcart_map.lo CC pcart_rank.lo CC pcart_shift.lo CC pcart_sub.lo CC pclose_port.lo CC pcomm_accept.lo CC pcomm_c2f.lo CC pcomm_call_errhandler.lo CC pcomm_compare.lo CC pcomm_connect.lo CC pcomm_create.lo CC pcomm_create_errhandler.lo CC pcomm_create_group.lo CC pcomm_create_keyval.lo CC pcomm_delete_attr.lo CC pcomm_disconnect.lo CC pcomm_dup.lo CC pcomm_dup_with_info.lo CC pcomm_idup.lo CC pcomm_f2c.lo CC pcomm_free.lo CC pcomm_free_keyval.lo CC pcomm_get_attr.lo CC pcomm_get_errhandler.lo CC pcomm_get_info.lo CC pcomm_get_name.lo CC pcomm_get_parent.lo CC pcomm_group.lo CC pcomm_join.lo CC pcomm_rank.lo CC pcomm_remote_group.lo CC pcomm_remote_size.lo CC pcomm_set_attr.lo CC pcomm_set_info.lo CC pdist_graph_create.lo CC pdist_graph_create_adjacent.lo CC pdist_graph_neighbors.lo CC pdist_graph_neighbors_count.lo CC pcomm_set_errhandler.lo CC pcomm_set_name.lo CC pcomm_size.lo CC pcomm_spawn.lo CC pcomm_spawn_multiple.lo CC pcomm_split.lo CC pcomm_split_type.lo CC pcomm_test_inter.lo CC pcompare_and_swap.lo CC pdims_create.lo CC perrhandler_c2f.lo CC perrhandler_create.lo CC perrhandler_f2c.lo CC perrhandler_free.lo CC perrhandler_get.lo CC perrhandler_set.lo CC perror_class.lo CC perror_string.lo CC pexscan.lo CC pfetch_and_op.lo CC piexscan.lo CC pfinalize.lo CC pfinalized.lo CC pfree_mem.lo CC pgather.lo CC pigather.lo CC pgatherv.lo CC pigatherv.lo CC pget_address.lo CC pget_count.lo CC pget_elements.lo CC pget_elements_x.lo CC pget_accumulate.lo CC pget_library_version.lo CC pget_processor_name.lo CC pget_version.lo CC pgraph_create.lo CC pgraph_get.lo CC pgraph_map.lo CC pgraph_neighbors_count.lo CC pgraph_neighbors.lo CC pgraphdims_get.lo CC pgrequest_complete.lo CC pgrequest_start.lo CC pgroup_c2f.lo CC pgroup_compare.lo CC pgroup_difference.lo CC pgroup_excl.lo CC pgroup_f2c.lo CC pgroup_free.lo CC pgroup_incl.lo CC pgroup_intersection.lo CC pgroup_range_excl.lo CC pgroup_range_incl.lo CC pgroup_rank.lo CC pgroup_size.lo CC pgroup_translate_ranks.lo CC pgroup_union.lo CC pibsend.lo CC pimprobe.lo CC pimrecv.lo CC pinfo_c2f.lo CC pinfo_create.lo CC pinfo_delete.lo CC pinfo_dup.lo CC pinfo_f2c.lo CC pinfo_free.lo CC pinfo_get.lo CC pinfo_get_nkeys.lo CC pinfo_get_nthkey.lo CC pinfo_get_valuelen.lo CC pinfo_set.lo CC pinit.lo CC pinit_thread.lo CC pinitialized.lo CC pintercomm_create.lo CC pintercomm_merge.lo CC piprobe.lo CC pirecv.lo CC pirsend.lo CC pis_thread_main.lo CC pisend.lo CC pissend.lo CC pkeyval_create.lo CC pkeyval_free.lo CC plookup_name.lo CC pmessage_f2c.lo CC pmessage_c2f.lo CC pmprobe.lo CC pmrecv.lo CC pneighbor_allgather.lo CC pineighbor_allgather.lo CC pneighbor_allgatherv.lo CC pineighbor_allgatherv.lo CC pneighbor_alltoall.lo CC pineighbor_alltoall.lo CC pneighbor_alltoallv.lo CC pineighbor_alltoallv.lo CC pneighbor_alltoallw.lo CC pineighbor_alltoallw.lo CC pop_c2f.lo CC pop_create.lo CC pop_commutative.lo CC pop_f2c.lo CC pop_free.lo CC popen_port.lo CC ppack_external.lo CC ppack_external_size.lo CC ppack.lo CC ppack_size.lo CC ppcontrol.lo CC pprobe.lo CC ppublish_name.lo CC pquery_thread.lo CC praccumulate.lo CC precv_init.lo CC precv.lo CC preduce.lo CC pireduce.lo CC preduce_local.lo CC preduce_scatter.lo CC pireduce_scatter.lo CC preduce_scatter_block.lo CC pireduce_scatter_block.lo CC prequest_c2f.lo CC prequest_f2c.lo CC prequest_free.lo CC prequest_get_status.lo CC prget.lo CC prget_accumulate.lo CC prput.lo CC prsend_init.lo CC prsend.lo CC pscan.lo CC piscan.lo CC pscatter.lo CC piscatter.lo CC pscatterv.lo CC piscatterv.lo CC psend.lo CC psend_init.lo CC psendrecv.lo CC psendrecv_replace.lo CC pssend_init.lo CC pssend.lo CC pstart.lo CC pstartall.lo CC pstatus_c2f.lo CC pstatus_f2c.lo CC pstatus_set_cancelled.lo CC pstatus_set_elements.lo CC pstatus_set_elements_x.lo CC ptestall.lo CC ptestany.lo CC ptest.lo CC ptest_cancelled.lo CC ptestsome.lo CC ptopo_test.lo CC ptype_c2f.lo CC ptype_commit.lo CC ptype_contiguous.lo CC ptype_create_darray.lo CC ptype_create_f90_complex.lo CC ptype_create_f90_integer.lo CC ptype_create_f90_real.lo CC ptype_create_hindexed.lo CC ptype_create_hvector.lo CC ptype_create_indexed_block.lo CC ptype_create_hindexed_block.lo CC ptype_create_keyval.lo CC ptype_create_resized.lo CC ptype_create_struct.lo CC ptype_create_subarray.lo CC ptype_delete_attr.lo CC ptype_dup.lo CC ptype_extent.lo CC ptype_f2c.lo CC ptype_free.lo CC ptype_get_attr.lo CC ptype_free_keyval.lo CC ptype_get_contents.lo CC ptype_get_envelope.lo CC ptype_get_extent.lo CC ptype_get_extent_x.lo CC ptype_get_name.lo CC ptype_get_true_extent.lo CC ptype_get_true_extent_x.lo CC ptype_hindexed.lo CC ptype_hvector.lo CC ptype_indexed.lo CC ptype_lb.lo CC ptype_match_size.lo CC ptype_set_attr.lo CC ptype_set_name.lo CC ptype_size.lo CC ptype_size_x.lo CC ptype_struct.lo CC ptype_ub.lo CC ptype_vector.lo CC punpack_external.lo CC punpack.lo CC punpublish_name.lo CC pwait.lo CC pwaitall.lo CC pwaitany.lo CC pwaitsome.lo CC pwtime.lo CC pwtick.lo CC paccumulate.lo CC pget.lo CC pput.lo CC pwin_allocate.lo CC pwin_allocate_shared.lo CC pwin_attach.lo CC pwin_c2f.lo CC pwin_call_errhandler.lo CC pwin_complete.lo CC pwin_create_errhandler.lo CC pwin_create_keyval.lo CC pwin_create.lo CC pwin_create_dynamic.lo CC pwin_delete_attr.lo CC pwin_f2c.lo CC pwin_detach.lo CC pwin_fence.lo CC pwin_flush.lo CC pwin_flush_all.lo CC pwin_flush_local.lo CC pwin_flush_local_all.lo CC pwin_free_keyval.lo CC pwin_free.lo CC pwin_get_attr.lo CC pwin_get_errhandler.lo CC pwin_get_group.lo CC pwin_get_info.lo CC pwin_get_name.lo CC pwin_lock.lo CC pwin_lock_all.lo CC pwin_post.lo CC pwin_set_attr.lo CC pwin_set_errhandler.lo CC pwin_set_info.lo CC pwin_set_name.lo CC pwin_shared_query.lo CC pwin_start.lo CC pwin_sync.lo CC pwin_test.lo CC pwin_unlock.lo CC pwin_unlock_all.lo CC pwin_wait.lo CC pfile_c2f.lo CC pfile_call_errhandler.lo CC pfile_close.lo CC pfile_create_errhandler.lo CC pfile_delete.lo CC pfile_f2c.lo CC pfile_get_amode.lo CC pfile_get_atomicity.lo CC pfile_get_byte_offset.lo CC pfile_get_errhandler.lo CC pfile_get_group.lo CC pfile_get_info.lo CC pfile_get_position.lo CC pfile_get_position_shared.lo CC pfile_get_size.lo CC pfile_get_type_extent.lo CC pfile_get_view.lo CC pfile_iread_at.lo CC pfile_iread.lo CC pfile_iread_shared.lo CC pfile_iwrite_at.lo CC pfile_iwrite.lo CC pfile_iwrite_shared.lo CC pfile_open.lo CC pfile_preallocate.lo CC pfile_read_all_begin.lo CC pfile_read_all.lo CC pfile_read_all_end.lo CC pfile_read_at_all_begin.lo CC pfile_read_at_all.lo CC pfile_read_at_all_end.lo CC pfile_read_at.lo CC pfile_read.lo CC pfile_read_ordered_begin.lo CC pfile_read_ordered.lo CC pfile_read_ordered_end.lo CC pfile_read_shared.lo CC pfile_seek.lo CC pfile_seek_shared.lo CC pfile_set_atomicity.lo CC pfile_set_errhandler.lo CC pfile_set_info.lo CC pfile_set_size.lo CC pfile_set_view.lo CC pfile_sync.lo CC pfile_write_all_begin.lo CC pfile_write_all.lo CC pfile_write_all_end.lo CC pfile_write_at_all_begin.lo CC pfile_write_at_all.lo CC pfile_write_at_all_end.lo CC pfile_write_at.lo CC pfile_write.lo CC pfile_write_ordered_begin.lo CC pfile_write_ordered.lo CC pfile_write_ordered_end.lo CC pfile_write_shared.lo CC pregister_datarep.lo CCLD libmpi_c_pmpi.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' CC attr_fn.lo CCLD libmpi_c.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/c' Making all in mpi/tool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool/profile' CC pcategory_changed.lo CC pcategory_get_categories.lo CC pcategory_get_cvars.lo CC pcategory_get_info.lo CC pcategory_get_index.lo CC pcategory_get_num.lo CC pcategory_get_pvars.lo CC pcvar_get_info.lo CC pcvar_get_index.lo CC pcvar_get_num.lo CC pcvar_handle_alloc.lo CC pcvar_handle_free.lo CC pcvar_read.lo CC pcvar_write.lo CC penum_get_info.lo CC penum_get_item.lo CC pfinalize.lo CC pinit_thread.lo CC ppvar_get_info.lo CC ppvar_get_index.lo CC ppvar_get_num.lo CC ppvar_handle_alloc.lo CC ppvar_handle_free.lo CC ppvar_read.lo CC ppvar_readreset.lo CC ppvar_reset.lo CC ppvar_session_create.lo CC ppvar_session_free.lo CC ppvar_start.lo CC ppvar_stop.lo CC ppvar_write.lo CCLD libmpi_pmpit.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' CC mpit_common.lo CCLD libmpi_mpit_common.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/tool' Making all in mpi/fortran/base/ make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/base' CC libmpi_fortran_base_la-attr_fn_f.lo CC libmpi_fortran_base_la-conversion_fn_null_f.lo CC libmpi_fortran_base_la-f90_accessors.lo CC libmpi_fortran_base_la-strings.lo CC libmpi_fortran_base_la-test_constants_f.lo CCLD libmpi_fortran_base.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/base' Making all in mca/common make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common' Making all in mca/allocator make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator' CC base/allocator_base_frame.lo CCLD libmca_allocator.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator' Making all in mca/bcol make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol' CC base/bcol_base_frame.lo CC base/bcol_base_init.lo CCLD libmca_bcol.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol' Making all in mca/bml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml' CC base/bml_base_btl.lo CC base/bml_base_endpoint.lo CC base/bml_base_init.lo CC base/bml_base_frame.lo CC base/bml_base_ft.lo CCLD libmca_bml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml' Making all in mca/btl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl' CC base/btl_base_frame.lo CC base/btl_base_error.lo CC base/btl_base_select.lo CC base/btl_base_mca.lo CCLD libmca_btl.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl' Making all in mca/coll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll' CC base/coll_base_comm_select.lo CC base/coll_base_comm_unselect.lo CC base/coll_base_find_available.lo CC base/coll_base_frame.lo CCLD libmca_coll.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll' Making all in mca/crcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/crcp' CC base/crcp_base_frame.lo CC base/crcp_base_select.lo CC base/crcp_base_fns.lo CCLD libmca_crcp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/crcp' Making all in mca/dpm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm' CC base/dpm_base_frame.lo CC base/dpm_base_select.lo CC base/dpm_base_null_fns.lo CC base/dpm_base_common_fns.lo CCLD libmca_dpm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm' Making all in mca/fbtl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl' CC base/fbtl_base_frame.lo CC base/fbtl_base_file_select.lo CC base/fbtl_base_file_unselect.lo CC base/fbtl_base_find_available.lo CCLD libmca_fbtl.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl' Making all in mca/fcoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll' CC base/fcoll_base_frame.lo CC base/fcoll_base_file_select.lo CC base/fcoll_base_file_unselect.lo CC base/fcoll_base_find_available.lo CCLD libmca_fcoll.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll' Making all in mca/fs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs' CC base/fs_base_frame.lo CC base/fs_base_file_select.lo CC base/fs_base_file_unselect.lo CC base/fs_base_find_available.lo CC base/fs_base_get_parent_dir.lo CCLD libmca_fs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs' Making all in mca/io make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io' CC base/io_base_frame.lo CC base/io_base_delete.lo CC base/io_base_file_select.lo CC base/io_base_find_available.lo CC base/io_base_request.lo CC base/io_base_register_datarep.lo CCLD libmca_io.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io' Making all in mca/mpool make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool' CC base/mpool_base_frame.lo CC base/mpool_base_init.lo CC base/mpool_base_lookup.lo CC base/mpool_base_alloc.lo CC base/mpool_base_mem_cb.lo CC base/mpool_base_tree.lo CCLD libmca_mpool.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool' Making all in mca/mtl make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mtl' CC base/mtl_base_frame.lo CCLD libmca_mtl.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mtl' Making all in mca/op make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/op' CC base/op_base_frame.lo CC base/op_base_find_available.lo CC base/op_base_functions.lo CC base/op_base_op_select.lo CCLD libmca_op.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/op' Making all in mca/osc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc' CC base/osc_base_frame.lo CC base/osc_base_init.lo CC base/osc_base_obj_convert.lo CCLD libmca_osc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc' Making all in mca/pml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml' CC base/pml_base_bsend.lo CC base/pml_base_frame.lo CC base/pml_base_recvreq.lo CC base/pml_base_request.lo CC base/pml_base_select.lo CC base/pml_base_sendreq.lo CC base/pml_base_ft.lo CCLD libmca_pml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml' Making all in mca/pubsub make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub' CC base/pubsub_base_frame.lo CC base/pubsub_base_select.lo CC base/pubsub_base_null_fns.lo CCLD libmca_pubsub.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub' Making all in mca/rcache make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache' CC base/rcache_base_frame.lo CC base/rcache_base_create.lo CCLD libmca_rcache.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache' Making all in mca/rte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte' CC base/rte_base_frame.lo CCLD libmca_rte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte' Making all in mca/sbgp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp' CC base/sbgp_base_frame.lo CC base/sbgp_base_init.lo CCLD libmca_sbgp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp' Making all in mca/sharedfp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp' CC base/sharedfp_base_file_select.lo CC base/sharedfp_base_file_unselect.lo CC base/sharedfp_base_find_available.lo CC base/sharedfp_base_frame.lo CCLD libmca_sharedfp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp' Making all in mca/topo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo' CC base/topo_base_cart_coords.lo CC base/topo_base_cart_create.lo CC base/topo_base_cart_get.lo CC base/topo_base_cart_rank.lo CC base/topo_base_cart_map.lo CC base/topo_base_cart_shift.lo CC base/topo_base_cart_sub.lo CC base/topo_base_cartdim_get.lo CC base/topo_base_comm_select.lo CC base/topo_base_dist_graph_create.lo CC base/topo_base_dist_graph_create_adjacent.lo CC base/topo_base_dist_graph_neighbors.lo CC base/topo_base_dist_graph_neighbors_count.lo CC base/topo_base_find_available.lo CC base/topo_base_frame.lo CC base/topo_base_graph_create.lo CC base/topo_base_graph_get.lo CC base/topo_base_graph_map.lo CC base/topo_base_graph_neighbors.lo CC base/topo_base_graph_neighbors_count.lo CC base/topo_base_graphdims_get.lo CC base/topo_base_lazy_init.lo CCLD libmca_topo.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo' Making all in mca/vprotocol make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol' CC base/vprotocol_base.lo CC base/vprotocol_base_select.lo CC base/vprotocol_base_parasite.lo CC base/vprotocol_base_request.lo CCLD libmca_vprotocol.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol' Making all in mca/common/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/sm' if test -z ""; then \ rm -f "libmca_common_sm.la"; \ ln -s "libmca_common_sm_noinst.la" "libmca_common_sm.la"; \ fi CC common_sm_rml.lo CC common_sm.lo CCLD libmca_common_sm_noinst.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/sm' Making all in mca/common/verbs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/verbs' CC common_verbs_basics.lo CC common_verbs_devlist.lo CC common_verbs_find_max_inline.lo CC common_verbs_find_ports.lo CC common_verbs_mca.lo CC common_verbs_port.lo CC common_verbs_qp_type.lo if test -z ""; then \ rm -f "libmca_common_verbs.la"; \ ln -s "libmca_common_verbs_noinst.la" "libmca_common_verbs.la"; \ fi CCLD libmca_common_verbs_noinst.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/common/verbs' Making all in mca/allocator/bucket make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/bucket' CC allocator_bucket.lo CC allocator_bucket_alloc.lo CCLD libmca_allocator_bucket.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/bucket' Making all in mca/allocator/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/basic' CC allocator_basic.lo CCLD libmca_allocator_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/allocator/basic' Making all in mca/bcol/ptpcoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/ptpcoll' CC bcol_ptpcoll_utils.lo CC bcol_ptpcoll_mca.lo CC bcol_ptpcoll_barrier.lo CC bcol_ptpcoll_bcast.lo CC bcol_ptpcoll_component.lo CC bcol_ptpcoll_fanin.lo CC bcol_ptpcoll_fanout.lo CC bcol_ptpcoll_module.lo CC bcol_ptpcoll_allreduce.lo CC bcol_ptpcoll_reduce.lo CC bcol_ptpcoll_allgather.lo CCLD libmca_bcol_ptpcoll.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/ptpcoll' Making all in mca/bcol/basesmuma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/basesmuma' CC bcol_basesmuma_bcast.lo CC bcol_basesmuma_component.lo CC bcol_basesmuma_module.lo CC bcol_basesmuma_buf_mgmt.lo CC bcol_basesmuma_mem_mgmt.lo CC bcol_basesmuma_fanin.lo CC bcol_basesmuma_fanout.lo CC bcol_basesmuma_progress.lo CC bcol_basesmuma_reduce.lo CC bcol_basesmuma_allreduce.lo CC bcol_basesmuma_setup.lo CC bcol_basesmuma_rd_barrier.lo CC bcol_basesmuma_rd_nb_barrier.lo CC bcol_basesmuma_rk_barrier.lo CC bcol_basesmuma_utils.lo CC bcol_basesmuma_bcast_prime.lo CC bcol_basesmuma_lmsg_knomial_bcast.lo CC bcol_basesmuma_lmsg_bcast.lo CC bcol_basesmuma_allgather.lo CC bcol_basesmuma_gather.lo CC bcol_basesmuma_smcm.lo CCLD libmca_bcol_basesmuma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bcol/basesmuma' Making all in mca/bml/r2 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml/r2' CC bml_r2.lo CC bml_r2_component.lo CC bml_r2_ft.lo CCLD libmca_bml_r2.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/bml/r2' Making all in mca/btl/self make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/self' CC btl_self.lo CC btl_self_component.lo CC btl_self_frag.lo CCLD libmca_btl_self.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/self' Making all in mca/btl/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/sm' CC libmca_btl_sm_la-btl_sm.lo CC libmca_btl_sm_la-btl_sm_component.lo CC libmca_btl_sm_la-btl_sm_frag.lo CCLD libmca_btl_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/sm' Making all in mca/btl/tcp make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/tcp' CC btl_tcp.lo CC btl_tcp_component.lo CC btl_tcp_endpoint.lo CC btl_tcp_frag.lo CC btl_tcp_proc.lo CC btl_tcp_ft.lo CCLD libmca_btl_tcp.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/tcp' Making all in mca/btl/openib make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/openib' CC btl_openib.lo CC btl_openib_component.lo CC btl_openib_endpoint.lo CC btl_openib_frag.lo CC btl_openib_proc.lo CC btl_openib_lex.lo CC btl_openib_mca.lo CC btl_openib_ini.lo CC btl_openib_async.lo CC btl_openib_xrc.lo CC btl_openib_fd.lo CC btl_openib_ip.lo CC connect/btl_openib_connect_base.lo CC connect/btl_openib_connect_empty.lo CC connect/btl_openib_connect_udcm.lo CCLD libmca_btl_openib.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/openib' Making all in mca/btl/vader make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/vader' CC btl_vader_module.lo CC btl_vader_component.lo CC btl_vader_frag.lo CC btl_vader_send.lo CC btl_vader_sendi.lo CC btl_vader_get.lo CC btl_vader_put.lo CC btl_vader_xpmem.lo CC btl_vader_knem.lo CCLD libmca_btl_vader.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/btl/vader' Making all in mca/coll/tuned make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/tuned' CC coll_tuned_topo.lo CC coll_tuned_util.lo CC coll_tuned_decision_fixed.lo CC coll_tuned_decision_dynamic.lo CC coll_tuned_dynamic_file.lo CC coll_tuned_dynamic_rules.lo CC coll_tuned_allreduce.lo CC coll_tuned_alltoall.lo CC coll_tuned_alltoallv.lo CC coll_tuned_allgather.lo CC coll_tuned_allgatherv.lo CC coll_tuned_barrier.lo CC coll_tuned_bcast.lo CC coll_tuned_reduce.lo CC coll_tuned_reduce_scatter.lo CC coll_tuned_gather.lo CC coll_tuned_scatter.lo CC coll_tuned_component.lo CC coll_tuned_module.lo CCLD libmca_coll_tuned.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/tuned' Making all in mca/coll/libnbc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/libnbc' CC coll_libnbc_component.lo CC coll_libnbc_ireduce_scatter_block.lo CC nbc.lo CC libdict/dict.lo CC libdict/hb_tree.lo CC nbc_iallgather.lo CC nbc_iallgatherv.lo CC nbc_iallreduce.lo CC nbc_ialltoall.lo CC nbc_ialltoallv.lo CC nbc_ialltoallw.lo CC nbc_ibarrier.lo CC nbc_ibcast.lo CC nbc_iexscan.lo CC nbc_ibcast_inter.lo CC nbc_igather.lo CC nbc_igatherv.lo CC nbc_ineighbor_allgather.lo CC nbc_ineighbor_allgatherv.lo CC nbc_ineighbor_alltoall.lo CC nbc_ineighbor_alltoallv.lo CC nbc_ineighbor_alltoallw.lo CC nbc_ireduce.lo CC nbc_ireduce_scatter.lo CC nbc_iscan.lo CC nbc_iscatter.lo CC nbc_iscatterv.lo CC nbc_neighbor_helpers.lo CCLD libmca_coll_libnbc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/libnbc' Making all in mca/coll/self make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/self' CC coll_self_allgather.lo CC coll_self_allgatherv.lo CC coll_self_allreduce.lo CC coll_self_alltoall.lo CC coll_self_alltoallv.lo CC coll_self_alltoallw.lo CC coll_self_barrier.lo CC coll_self_bcast.lo CC coll_self_component.lo CC coll_self_gather.lo CC coll_self_gatherv.lo CC coll_self_module.lo CC coll_self_reduce.lo CC coll_self_reduce_scatter.lo CC coll_self_exscan.lo CC coll_self_scan.lo CC coll_self_scatter.lo CC coll_self_scatterv.lo CCLD libmca_coll_self.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/self' Making all in mca/coll/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/sm' CC coll_sm_allreduce.lo CC coll_sm_barrier.lo CC coll_sm_bcast.lo CC coll_sm_component.lo CC coll_sm_module.lo CC coll_sm_reduce.lo CCLD libmca_coll_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/sm' Making all in mca/coll/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/basic' CC coll_basic_allgather.lo CC coll_basic_allgatherv.lo CC coll_basic_allreduce.lo CC coll_basic_alltoall.lo CC coll_basic_alltoallv.lo CC coll_basic_alltoallw.lo CC coll_basic_barrier.lo CC coll_basic_bcast.lo CC coll_basic_component.lo CC coll_basic_gather.lo CC coll_basic_gatherv.lo CC coll_basic_module.lo CC coll_basic_neighbor_allgather.lo CC coll_basic_neighbor_allgatherv.lo CC coll_basic_neighbor_alltoall.lo CC coll_basic_neighbor_alltoallv.lo CC coll_basic_neighbor_alltoallw.lo CC coll_basic_reduce.lo CC coll_basic_reduce_scatter.lo CC coll_basic_reduce_scatter_block.lo CC coll_basic_scan.lo CC coll_basic_exscan.lo CC coll_basic_scatter.lo CC coll_basic_scatterv.lo CCLD libmca_coll_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/basic' Making all in mca/coll/inter make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/inter' CC coll_inter.lo CC coll_inter_allreduce.lo CC coll_inter_allgather.lo CC coll_inter_allgatherv.lo CC coll_inter_gather.lo CC coll_inter_gatherv.lo CC coll_inter_scatter.lo CC coll_inter_scatterv.lo CC coll_inter_bcast.lo CC coll_inter_component.lo CC coll_inter_reduce.lo CCLD libmca_coll_inter.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/inter' Making all in mca/coll/hierarch make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/hierarch' CC coll_hierarch.lo CC coll_hierarch_allreduce.lo CC coll_hierarch_barrier.lo CC coll_hierarch_bcast.lo CC coll_hierarch_component.lo CC coll_hierarch_reduce.lo CC coll_hierarch_tmpcoll.lo CCLD libmca_coll_hierarch.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/hierarch' Making all in mca/coll/ml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/ml' CC coll_ml_module.lo CC coll_ml_allocation.lo CC coll_ml_barrier.lo CC coll_ml_bcast.lo CC coll_ml_component.lo CC coll_ml_copy_fns.lo CC coll_ml_descriptors.lo CC coll_ml_hier_algorithms.lo CC coll_ml_hier_algorithms_setup.lo CC coll_ml_hier_algorithms_bcast_setup.lo CC coll_ml_hier_algorithms_allreduce_setup.lo CC coll_ml_hier_algorithms_reduce_setup.lo CC coll_ml_hier_algorithms_common_setup.lo CC coll_ml_hier_algorithms_allgather_setup.lo CC coll_ml_hier_algorithm_memsync_setup.lo CC coll_ml_custom_utils.lo CC coll_ml_progress.lo CC coll_ml_reduce.lo CC coll_ml_allreduce.lo CC coll_ml_allgather.lo CC coll_ml_mca.lo CC coll_ml_lmngr.lo CC coll_ml_hier_algorithms_barrier_setup.lo CC coll_ml_select.lo CC coll_ml_memsync.lo CC coll_ml_lex.lo CC coll_ml_config.lo CCLD libmca_coll_ml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/coll/ml' Making all in mca/dpm/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm/orte' CC dpm_orte.lo CC dpm_orte_component.lo CCLD libmca_dpm_orte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/dpm/orte' Making all in mca/fbtl/posix make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl/posix' CC fbtl_posix.lo CC fbtl_posix_component.lo CC fbtl_posix_preadv.lo CC fbtl_posix_ipreadv.lo CC fbtl_posix_pwritev.lo CC fbtl_posix_ipwritev.lo CCLD libmca_fbtl_posix.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fbtl/posix' Making all in mca/fcoll/individual make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/individual' CC fcoll_individual_module.lo CC fcoll_individual_component.lo CC fcoll_individual_file_read_all.lo CC fcoll_individual_file_read_all_begin.lo CC fcoll_individual_file_read_all_end.lo CC fcoll_individual_file_write_all.lo CC fcoll_individual_file_write_all_begin.lo CC fcoll_individual_file_write_all_end.lo CCLD libmca_fcoll_individual.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/individual' Making all in mca/fcoll/dynamic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/dynamic' CC fcoll_dynamic_module.lo CC fcoll_dynamic_component.lo CC fcoll_dynamic_file_read_all.lo CC fcoll_dynamic_file_read_all_begin.lo CC fcoll_dynamic_file_read_all_end.lo CC fcoll_dynamic_file_write_all.lo CC fcoll_dynamic_file_write_all_begin.lo CC fcoll_dynamic_file_write_all_end.lo CCLD libmca_fcoll_dynamic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/dynamic' Making all in mca/fcoll/ylib make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/ylib' CC fcoll_ylib_module.lo CC fcoll_ylib_component.lo CC fcoll_ylib_file_read_all.lo CC fcoll_ylib_file_read_all_begin.lo CC fcoll_ylib_file_read_all_end.lo CC fcoll_ylib_file_write_all.lo CC fcoll_ylib_file_write_all_begin.lo CC fcoll_ylib_file_write_all_end.lo CCLD libmca_fcoll_ylib.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/ylib' Making all in mca/fcoll/static make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/static' CC fcoll_static_module.lo CC fcoll_static_component.lo CC fcoll_static_file_read_all.lo CC fcoll_static_file_read_all_begin.lo CC fcoll_static_file_read_all_end.lo CC fcoll_static_file_write_all.lo CC fcoll_static_file_write_all_begin.lo CC fcoll_static_file_write_all_end.lo CCLD libmca_fcoll_static.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/static' Making all in mca/fcoll/two_phase make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/two_phase' CC fcoll_two_phase_module.lo CC fcoll_two_phase_component.lo CC fcoll_two_phase_file_read_all.lo CC fcoll_two_phase_file_read_all_begin.lo CC fcoll_two_phase_file_read_all_end.lo CC fcoll_two_phase_file_write_all.lo CC fcoll_two_phase_file_write_all_begin.lo CC fcoll_two_phase_support_fns.lo CC fcoll_two_phase_file_write_all_end.lo CCLD libmca_fcoll_two_phase.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fcoll/two_phase' Making all in mca/fs/ufs make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs/ufs' CC fs_ufs.lo CC fs_ufs_component.lo CC fs_ufs_file_open.lo CC fs_ufs_file_close.lo CC fs_ufs_file_delete.lo CC fs_ufs_file_sync.lo CC fs_ufs_file_set_size.lo CC fs_ufs_file_get_size.lo CC fs_ufs_file_set_info.lo CCLD libmca_fs_ufs.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/fs/ufs' Making all in mca/io/ompio make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/ompio' CC io_ompio.lo CC io_ompio_component.lo CC io_ompio_module.lo CC io_ompio_coll_array.lo CC io_ompio_file_set_view.lo CC io_ompio_file_open.lo CC io_ompio_file_write.lo CC io_ompio_file_read.lo CC io_ompio_nbc.lo CCLD libmca_io_ompio.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/ompio' Making all in mca/io/romio make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' Making all in romio make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[4]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' CC mpi-io/close.lo CC mpi-io/delete.lo CC mpi-io/fsync.lo CC mpi-io/get_amode.lo CC mpi-io/get_atom.lo CC mpi-io/get_bytoff.lo CC mpi-io/get_extent.lo CC mpi-io/get_group.lo CC mpi-io/get_info.lo CC mpi-io/get_posn.lo CC mpi-io/get_posn_sh.lo CC mpi-io/get_size.lo CC mpi-io/get_view.lo CC mpi-io/iread.lo CC mpi-io/iread_at.lo CC mpi-io/iread_sh.lo CC mpi-io/iwrite.lo CC mpi-io/iwrite_at.lo CC mpi-io/iwrite_sh.lo CC mpi-io/open.lo CC mpi-io/prealloc.lo CC mpi-io/rd_atallb.lo CC mpi-io/rd_atalle.lo CC mpi-io/read.lo CC mpi-io/read_all.lo CC mpi-io/read_allb.lo CC mpi-io/read_alle.lo CC mpi-io/read_at.lo CC mpi-io/read_ord.lo CC mpi-io/read_atall.lo CC mpi-io/read_ordb.lo CC mpi-io/read_orde.lo CC mpi-io/read_sh.lo CC mpi-io/register_datarep.lo CC mpi-io/seek.lo CC mpi-io/seek_sh.lo CC mpi-io/set_atom.lo CC mpi-io/set_info.lo CC mpi-io/set_size.lo CC mpi-io/set_view.lo CC mpi-io/wr_atallb.lo CC mpi-io/wr_atalle.lo CC mpi-io/write.lo CC mpi-io/write_all.lo CC mpi-io/write_allb.lo CC mpi-io/write_alle.lo CC mpi-io/write_at.lo CC mpi-io/write_atall.lo CC mpi-io/write_ord.lo CC mpi-io/write_ordb.lo CC mpi-io/write_orde.lo CC mpi-io/write_sh.lo CC mpi-io/glue/openmpi/mpio_file.lo CC mpi-io/glue/openmpi/mpio_err.lo CC mpi-io/mpich_fileutil.lo CC mpi-io/mpir-mpioinit.lo CC mpi-io/mpiu_greq.lo CC mpi-io/mpiu_external32.lo CC adio/ad_nfs/ad_nfs_read.lo CC adio/ad_nfs/ad_nfs_open.lo CC adio/ad_nfs/ad_nfs_write.lo CC adio/ad_nfs/ad_nfs_done.lo CC adio/ad_nfs/ad_nfs_fcntl.lo CC adio/ad_nfs/ad_nfs_iread.lo CC adio/ad_nfs/ad_nfs_iwrite.lo CC adio/ad_nfs/ad_nfs_wait.lo CC adio/ad_nfs/ad_nfs_setsh.lo CC adio/ad_nfs/ad_nfs_getsh.lo CC adio/ad_nfs/ad_nfs.lo CC adio/ad_nfs/ad_nfs_resize.lo CC adio/ad_testfs/ad_testfs_close.lo CC adio/ad_nfs/ad_nfs_features.lo CC adio/ad_testfs/ad_testfs_read.lo CC adio/ad_testfs/ad_testfs_rdcoll.lo CC adio/ad_testfs/ad_testfs_wrcoll.lo CC adio/ad_testfs/ad_testfs_open.lo CC adio/ad_testfs/ad_testfs_write.lo CC adio/ad_testfs/ad_testfs_done.lo CC adio/ad_testfs/ad_testfs_fcntl.lo CC adio/ad_testfs/ad_testfs_iread.lo CC adio/ad_testfs/ad_testfs_iwrite.lo CC adio/ad_testfs/ad_testfs_wait.lo CC adio/ad_testfs/ad_testfs_flush.lo CC adio/ad_testfs/ad_testfs_seek.lo CC adio/ad_testfs/ad_testfs_resize.lo CC adio/ad_testfs/ad_testfs_hints.lo CC adio/ad_testfs/ad_testfs_delete.lo CC adio/ad_testfs/ad_testfs.lo CC adio/ad_ufs/ad_ufs.lo CC adio/ad_ufs/ad_ufs_open.lo CC adio/common/ad_aggregate.lo CC adio/common/ad_aggregate_new.lo CC adio/common/ad_coll_build_req_new.lo CC adio/common/ad_close.lo CC adio/common/ad_coll_exch_new.lo CC adio/common/ad_darray.lo CC adio/common/ad_delete.lo CC adio/common/ad_done.lo CC adio/common/ad_done_fake.lo CC adio/common/ad_end.lo CC adio/common/ad_fcntl.lo CC adio/common/ad_features.lo CC adio/common/ad_flush.lo CC adio/common/ad_fstype.lo CC adio/common/ad_get_sh_fp.lo CC adio/common/ad_hints.lo CC adio/common/ad_init.lo CC adio/common/ad_io_coll.lo CC adio/common/ad_iopen.lo CC adio/common/ad_iread.lo CC adio/common/ad_iread_fake.lo CC adio/common/ad_iwrite.lo CC adio/common/ad_iwrite_fake.lo CC adio/common/ad_open.lo CC adio/common/ad_opencoll.lo CC adio/common/ad_opencoll_failsafe.lo CC adio/common/ad_opencoll_scalable.lo CC adio/common/ad_prealloc.lo CC adio/common/ad_read.lo CC adio/common/ad_read_str.lo CC adio/common/ad_read_coll.lo CC adio/common/ad_read_str_naive.lo CC adio/common/ad_resize.lo CC adio/common/ad_seek.lo CC adio/common/ad_set_sh_fp.lo CC adio/common/ad_subarray.lo CC adio/common/ad_set_view.lo CC adio/common/ad_wait.lo CC adio/common/ad_wait_fake.lo CC adio/common/ad_write.lo CC adio/common/ad_write_coll.lo CC adio/common/ad_write_nolock.lo CC adio/common/ad_write_str.lo CC adio/common/ad_write_str_naive.lo CC adio/common/adi_close.lo CC adio/common/byte_offset.lo CC adio/common/cb_config_list.lo CC adio/common/eof_offset.lo CC adio/common/error.lo CC adio/common/flatten.lo CC adio/common/get_fp_posn.lo CC adio/common/greq_fns.lo CC adio/common/heap-sort.lo CC adio/common/iscontig.lo CC adio/common/lock.lo CC adio/common/malloc.lo CC adio/common/shfp_fname.lo CC adio/common/status_setb.lo CC adio/common/strfns.lo CC adio/common/system_hints.lo CCLD libromio_dist.la make[4]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio/romio' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' CC src/io_romio_component.lo CC src/io_romio_file_open.lo CC src/io_romio_file_read.lo CC src/io_romio_file_write.lo CC src/io_romio_module.lo CCLD libmca_io_romio.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/io/romio' Making all in mca/mpool/grdma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/grdma' CC mpool_grdma_module.lo CC mpool_grdma_component.lo CCLD libmca_mpool_grdma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/grdma' Making all in mca/mpool/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/sm' CC mpool_sm_module.lo CC mpool_sm_component.lo CCLD libmca_mpool_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/mpool/sm' Making all in mca/osc/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/sm' CC osc_sm_comm.lo CC osc_sm_component.lo CC osc_sm_active_target.lo CC osc_sm_passive_target.lo CCLD libmca_osc_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/sm' Making all in mca/osc/rdma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/rdma' CC osc_rdma.lo CC osc_rdma_comm.lo CC osc_rdma_component.lo CC osc_rdma_data_move.lo CC osc_rdma_frag.lo CC osc_rdma_request.lo CC osc_rdma_active_target.lo CC osc_rdma_passive_target.lo CCLD libmca_osc_rdma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/osc/rdma' Making all in mca/pml/cm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/cm' CC pml_cm.lo CC pml_cm_cancel.lo CC pml_cm_component.lo CC pml_cm_probe.lo CC pml_cm_recv.lo CC pml_cm_recvreq.lo CC pml_cm_request.lo CC pml_cm_send.lo CC pml_cm_sendreq.lo CC pml_cm_start.lo CCLD libmca_pml_cm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/cm' Making all in mca/pml/bfo make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/bfo' CC pml_bfo_comm.lo CC pml_bfo.lo CC pml_bfo_component.lo CC pml_bfo_failover.lo CC pml_bfo_iprobe.lo CC pml_bfo_irecv.lo CC pml_bfo_isend.lo CC pml_bfo_progress.lo CC pml_bfo_rdma.lo CC pml_bfo_rdmafrag.lo CC pml_bfo_recvfrag.lo CC pml_bfo_recvreq.lo CC pml_bfo_sendreq.lo CC pml_bfo_start.lo CCLD libmca_pml_bfo.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/bfo' Making all in mca/pml/v make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/v' CC pml_v_output.lo CC pml_v_component.lo CCLD libmca_pml_v.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/v' Making all in mca/pml/ob1 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/ob1' CC pml_ob1_comm.lo CC pml_ob1.lo CC pml_ob1_component.lo CC pml_ob1_iprobe.lo CC pml_ob1_irecv.lo CC pml_ob1_isend.lo CC pml_ob1_progress.lo CC pml_ob1_rdma.lo CC pml_ob1_rdmafrag.lo CC pml_ob1_recvfrag.lo CC pml_ob1_recvreq.lo CC pml_ob1_sendreq.lo CC pml_ob1_start.lo CCLD libmca_pml_ob1.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pml/ob1' Making all in mca/pubsub/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub/orte' CC pubsub_orte_component.lo CC pubsub_orte.lo CCLD libmca_pubsub_orte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/pubsub/orte' Making all in mca/rcache/vma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache/vma' CC rcache_vma.lo CC rcache_vma_component.lo CC rcache_vma_tree.lo CCLD libmca_rcache_vma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rcache/vma' Making all in mca/rte/orte make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte/orte' CC rte_orte_component.lo cp -f ../../../../orte/tools/orterun/orterun.1 mpirun.1 cp -f ../../../../orte/tools/orterun/orterun.1 mpiexec.1 cp -f ../../../../orte/tools/orte-ps/orte-ps.1 ompi-ps.1 cp -f ../../../../orte/tools/orte-clean/orte-clean.1 ompi-clean.1 CC rte_orte_module.lo cp -f ../../../../orte/tools/orte-top/orte-top.1 ompi-top.1 cp -f ../../../../orte/tools/orte-server/orte-server.1 ompi-server.1 CCLD libmca_rte_orte.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/rte/orte' Making all in mca/sbgp/basesmuma make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmuma' CC sbgp_basesmuma_component.lo CC sbgp_basesmuma_module.lo CCLD libmca_sbgp_basesmuma.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmuma' Making all in mca/sbgp/basesmsocket make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmsocket' CC sbgp_basesmsocket_component.lo CC sbgp_basesmsocket_module.lo CCLD libmca_sbgp_basesmsocket.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/basesmsocket' Making all in mca/sbgp/p2p make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/p2p' CC sbgp_p2p_component.lo CC sbgp_p2p_module.lo CCLD libmca_sbgp_p2p.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sbgp/p2p' Making all in mca/sharedfp/individual make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/individual' CC sharedfp_individual.lo CC sharedfp_individual_component.lo CC sharedfp_individual_seek.lo CC sharedfp_individual_get_position.lo CC sharedfp_individual_collaborate_data.lo CC sharedfp_individual_write.lo CC sharedfp_individual_iwrite.lo CC sharedfp_individual_read.lo CC sharedfp_individual_insert_metadata.lo CC sharedfp_individual_file_open.lo CC sharedfp_individual_gettime.lo CCLD libmca_sharedfp_individual.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/individual' Making all in mca/sharedfp/sm make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/sm' CC sharedfp_sm_component.lo CC sharedfp_sm.lo CC sharedfp_sm_seek.lo CC sharedfp_sm_get_position.lo CC sharedfp_sm_request_position.lo CC sharedfp_sm_write.lo CC sharedfp_sm_iwrite.lo CC sharedfp_sm_read.lo CC sharedfp_sm_iread.lo CC sharedfp_sm_file_open.lo CCLD libmca_sharedfp_sm.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/sm' Making all in mca/sharedfp/lockedfile make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/lockedfile' CC sharedfp_lockedfile.lo CC sharedfp_lockedfile_component.lo CC sharedfp_lockedfile_seek.lo CC sharedfp_lockedfile_get_position.lo CC sharedfp_lockedfile_request_position.lo CC sharedfp_lockedfile_write.lo CC sharedfp_lockedfile_iwrite.lo CC sharedfp_lockedfile_read.lo CC sharedfp_lockedfile_iread.lo CC sharedfp_lockedfile_file_open.lo CCLD libmca_sharedfp_lockedfile.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/sharedfp/lockedfile' Making all in mca/topo/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo/basic' CC topo_basic_component.lo CCLD libmca_topo_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/topo/basic' Making all in mca/vprotocol/pessimist make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol/pessimist' CC vprotocol_pessimist.lo CC vprotocol_pessimist_component.lo CC vprotocol_pessimist_request.lo CC vprotocol_pessimist_proc.lo CC vprotocol_pessimist_comm.lo CC vprotocol_pessimist_progress.lo CC vprotocol_pessimist_start.lo CC vprotocol_pessimist_recv.lo CC vprotocol_pessimist_send.lo CC vprotocol_pessimist_probe.lo CC vprotocol_pessimist_wait.lo CC vprotocol_pessimist_event.lo CC vprotocol_pessimist_eventlog.lo CC vprotocol_pessimist_sender_based.lo CCLD libmca_vprotocol_pessimist.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mca/vprotocol/pessimist' Making all in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' CC class/ompi_free_list.lo CC class/ompi_seq_tracker.lo CC class/ompi_rb_tree.lo CC attribute/attribute.lo CC attribute/attribute_predefined.lo CC communicator/comm_init.lo CC communicator/comm.lo CC communicator/comm_cid.lo CC communicator/comm_request.lo CC communicator/comm_helpers.lo CC errhandler/errhandler.lo CC errhandler/errhandler_invoke.lo CC errhandler/errhandler_predefined.lo CC errhandler/errcode.lo CC errhandler/errcode-internal.lo CC file/file.lo CC group/group.lo CC group/group_set_rank.lo CC group/group_init.lo CC group/group_plist.lo CC group/group_strided.lo CC group/group_sporadic.lo CC group/group_bitmap.lo CC info/info.lo CC message/message.lo CC op/op.lo CC proc/proc.lo CC request/grequest.lo CC request/request.lo CC request/req_test.lo CC request/req_wait.lo CC runtime/ompi_mpi_abort.lo CC runtime/ompi_mpi_init.lo CC runtime/ompi_mpi_finalize.lo CC runtime/ompi_mpi_params.lo CC runtime/ompi_mpi_preconnect.lo CC runtime/ompi_cr.lo CC runtime/ompi_module_exchange.lo CC runtime/ompi_info_support.lo CC win/win.lo CC mpiext/mpiext.lo CC patterns/net/netpatterns_base.lo CC patterns/net/netpatterns_multinomial_tree.lo CC patterns/net/netpatterns_nary_tree.lo CC patterns/net/netpatterns_knomial_tree.lo CC patterns/comm/allreduce.lo CC patterns/comm/allgather.lo CC patterns/comm/bcast.lo CCLD libmpi.la copying selected object files to avoid basename conflicts... make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making all in mpi/cxx make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/cxx' CXX mpicxx.lo CXX intercepts.lo CXX comm.lo CXX datatype.lo CXX win.lo CXX file.lo CXXLD libmpi_cxx.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/cxx' Making all in mpi/fortran/mpif-h make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h/profile' GENERATE psizeof_f.f90 CC pabort_f.lo CC padd_error_class_f.lo CC padd_error_code_f.lo CC padd_error_string_f.lo CC paddress_f.lo CC pallgather_f.lo CC pallgatherv_f.lo CC palloc_mem_f.lo CC pallreduce_f.lo CC palltoall_f.lo CC palltoallv_f.lo CC palltoallw_f.lo CC pattr_delete_f.lo CC pattr_get_f.lo CC pattr_put_f.lo CC pbarrier_f.lo CC pbcast_f.lo CC pbsend_f.lo CC pbsend_init_f.lo CC pbuffer_attach_f.lo CC pbuffer_detach_f.lo CC pcancel_f.lo CC pcart_coords_f.lo CC pcart_create_f.lo CC pcartdim_get_f.lo CC pcart_get_f.lo CC pcart_map_f.lo CC pcart_rank_f.lo CC pcart_shift_f.lo CC pcart_sub_f.lo CC pclose_port_f.lo CC pcomm_accept_f.lo CC pcomm_call_errhandler_f.lo CC pcomm_compare_f.lo CC pcomm_connect_f.lo CC pcomm_create_errhandler_f.lo CC pcomm_create_f.lo CC pcomm_create_group_f.lo CC pcomm_create_keyval_f.lo CC pcomm_delete_attr_f.lo CC pcomm_disconnect_f.lo CC pcomm_dup_f.lo CC pcomm_dup_with_info_f.lo CC pcomm_idup_f.lo CC pcomm_free_f.lo CC pcomm_free_keyval_f.lo CC pcomm_get_attr_f.lo CC pcomm_get_errhandler_f.lo CC pcomm_get_info_f.lo CC pcomm_get_name_f.lo CC pcomm_get_parent_f.lo CC pcomm_group_f.lo CC pcomm_join_f.lo CC pcomm_rank_f.lo CC pcomm_remote_group_f.lo CC pcomm_remote_size_f.lo CC pcomm_set_attr_f.lo CC pcomm_set_errhandler_f.lo CC pcomm_set_info_f.lo CC pcomm_set_name_f.lo CC pcomm_size_f.lo CC pcomm_spawn_f.lo CC pcomm_spawn_multiple_f.lo CC pcomm_split_f.lo CC pcomm_split_type_f.lo CC pcomm_test_inter_f.lo CC pdims_create_f.lo CC pdist_graph_create_adjacent_f.lo CC pdist_graph_create_f.lo CC pdist_graph_neighbors_f.lo CC pdist_graph_neighbors_count_f.lo CC perrhandler_create_f.lo CC perrhandler_free_f.lo CC perrhandler_get_f.lo CC perrhandler_set_f.lo CC perror_class_f.lo CC perror_string_f.lo CC pexscan_f.lo CC pf_sync_reg_f.lo CC pfinalized_f.lo CC pfinalize_f.lo CC pfree_mem_f.lo CC pgather_f.lo CC pgatherv_f.lo CC pget_address_f.lo CC pget_count_f.lo CC pget_elements_f.lo CC pget_elements_x_f.lo CC pget_library_version_f.lo CC pget_processor_name_f.lo CC pget_version_f.lo CC pgraph_create_f.lo CC pgraphdims_get_f.lo CC pgraph_get_f.lo CC pgraph_map_f.lo CC pgraph_neighbors_count_f.lo CC pgraph_neighbors_f.lo CC pgrequest_complete_f.lo CC pgrequest_start_f.lo CC pgroup_compare_f.lo CC pgroup_difference_f.lo CC pgroup_excl_f.lo CC pgroup_free_f.lo CC pgroup_incl_f.lo CC pgroup_intersection_f.lo CC pgroup_range_excl_f.lo CC pgroup_range_incl_f.lo CC pgroup_rank_f.lo CC pgroup_size_f.lo CC pgroup_translate_ranks_f.lo CC pgroup_union_f.lo CC piallgather_f.lo CC piallgatherv_f.lo CC piallreduce_f.lo CC pialltoall_f.lo CC pialltoallv_f.lo CC pialltoallw_f.lo CC pibarrier_f.lo CC pibcast_f.lo CC pibsend_f.lo CC piexscan_f.lo CC pigather_f.lo CC pigatherv_f.lo CC pimprobe_f.lo CC pimrecv_f.lo CC pineighbor_allgather_f.lo CC pineighbor_allgatherv_f.lo CC pineighbor_alltoall_f.lo CC pineighbor_alltoallv_f.lo CC pineighbor_alltoallw_f.lo CC pinfo_delete_f.lo CC pinfo_create_f.lo CC pinfo_dup_f.lo CC pinfo_free_f.lo CC pinfo_get_f.lo CC pinfo_get_nkeys_f.lo CC pinfo_get_nthkey_f.lo CC pinfo_get_valuelen_f.lo CC pinfo_set_f.lo CC pinit_f.lo CC pinitialized_f.lo CC pinit_thread_f.lo CC pintercomm_create_f.lo CC pintercomm_merge_f.lo CC piprobe_f.lo CC pirecv_f.lo CC pireduce_f.lo CC pireduce_scatter_f.lo CC pireduce_scatter_block_f.lo CC pirsend_f.lo CC piscan_f.lo CC piscatter_f.lo CC pisend_f.lo CC piscatterv_f.lo CC pissend_f.lo CC pis_thread_main_f.lo CC pkeyval_create_f.lo CC pkeyval_free_f.lo CC plookup_name_f.lo CC pmprobe_f.lo CC pmrecv_f.lo CC pneighbor_allgather_f.lo CC pneighbor_allgatherv_f.lo CC pneighbor_alltoall_f.lo CC pneighbor_alltoallv_f.lo CC pneighbor_alltoallw_f.lo CC pop_commutative_f.lo CC pop_create_f.lo CC popen_port_f.lo CC pop_free_f.lo CC ppack_external_f.lo CC ppack_external_size_f.lo CC ppack_f.lo CC ppack_size_f.lo CC ppcontrol_f.lo CC pprobe_f.lo CC ppublish_name_f.lo CC pquery_thread_f.lo CC precv_f.lo CC precv_init_f.lo CC preduce_f.lo CC preduce_local_f.lo CC preduce_scatter_f.lo CC preduce_scatter_block_f.lo CC prequest_free_f.lo CC prequest_get_status_f.lo CC prsend_f.lo CC prsend_init_f.lo CC pscan_f.lo CC pscatter_f.lo CC pscatterv_f.lo CC psend_f.lo CC psend_init_f.lo CC psendrecv_f.lo CC psendrecv_replace_f.lo CC pssend_f.lo CC pssend_init_f.lo CC pstartall_f.lo CC pstart_f.lo CC pstatus_set_cancelled_f.lo CC pstatus_set_elements_f.lo CC pstatus_set_elements_x_f.lo CC ptestall_f.lo CC ptestany_f.lo CC ptest_cancelled_f.lo CC ptest_f.lo CC ptestsome_f.lo CC ptopo_test_f.lo CC ptype_commit_f.lo CC ptype_contiguous_f.lo CC ptype_create_darray_f.lo CC ptype_create_f90_complex_f.lo CC ptype_create_f90_integer_f.lo CC ptype_create_f90_real_f.lo CC ptype_create_hindexed_f.lo CC ptype_create_hvector_f.lo CC ptype_create_indexed_block_f.lo CC ptype_create_hindexed_block_f.lo CC ptype_create_keyval_f.lo CC ptype_create_resized_f.lo CC ptype_create_struct_f.lo CC ptype_create_subarray_f.lo CC ptype_delete_attr_f.lo CC ptype_dup_f.lo CC ptype_extent_f.lo CC ptype_free_f.lo CC ptype_get_attr_f.lo CC ptype_free_keyval_f.lo CC ptype_get_contents_f.lo CC ptype_get_envelope_f.lo CC ptype_get_extent_f.lo CC ptype_get_extent_x_f.lo CC ptype_get_name_f.lo CC ptype_get_true_extent_f.lo CC ptype_get_true_extent_x_f.lo CC ptype_hindexed_f.lo CC ptype_hvector_f.lo CC ptype_indexed_f.lo CC ptype_lb_f.lo CC ptype_match_size_f.lo CC ptype_set_attr_f.lo CC ptype_set_name_f.lo CC ptype_size_f.lo CC ptype_size_x_f.lo CC ptype_struct_f.lo CC ptype_ub_f.lo CC ptype_vector_f.lo CC punpack_external_f.lo CC punpack_f.lo CC punpublish_name_f.lo CC pwaitall_f.lo CC pwaitany_f.lo CC pwait_f.lo CC pwaitsome_f.lo CC pwtick_f.lo CC pwtime_f.lo CC paccumulate_f.lo CC praccumulate_f.lo CC prget_f.lo CC pget_f.lo CC pget_accumulate_f.lo CC prget_accumulate_f.lo CC prput_f.lo CC pput_f.lo CC pcompare_and_swap_f.lo CC pfetch_and_op_f.lo CC pwin_allocate_f.lo CC pwin_allocate_shared_f.lo CC pwin_call_errhandler_f.lo CC pwin_complete_f.lo CC pwin_create_errhandler_f.lo CC pwin_create_f.lo CC pwin_create_keyval_f.lo CC pwin_delete_attr_f.lo CC pwin_free_f.lo CC pwin_free_keyval_f.lo CC pwin_fence_f.lo CC pwin_get_attr_f.lo CC pwin_get_errhandler_f.lo CC pwin_get_group_f.lo CC pwin_get_name_f.lo CC pwin_lock_f.lo CC pwin_lock_all_f.lo CC pwin_post_f.lo CC pwin_set_attr_f.lo CC pwin_set_errhandler_f.lo CC pwin_set_name_f.lo CC pwin_shared_query_f.lo CC pwin_start_f.lo CC pwin_sync_f.lo CC pwin_test_f.lo CC pwin_unlock_f.lo CC pwin_wait_f.lo CC pwin_unlock_all_f.lo CC pwin_flush_f.lo CC pwin_flush_all_f.lo CC pwin_flush_local_f.lo CC pwin_flush_local_all_f.lo CC pfile_call_errhandler_f.lo CC pfile_close_f.lo CC pfile_create_errhandler_f.lo CC pfile_delete_f.lo CC pfile_get_amode_f.lo CC pfile_get_atomicity_f.lo CC pfile_get_byte_offset_f.lo CC pfile_get_errhandler_f.lo CC pfile_get_group_f.lo CC pfile_get_info_f.lo CC pfile_get_position_f.lo CC pfile_get_position_shared_f.lo CC pfile_get_size_f.lo CC pfile_get_type_extent_f.lo CC pfile_get_view_f.lo CC pfile_iread_at_f.lo CC pfile_iread_f.lo CC pfile_iread_shared_f.lo CC pfile_iwrite_f.lo CC pfile_iwrite_shared_f.lo CC pfile_open_f.lo CC pfile_iwrite_at_f.lo CC pfile_preallocate_f.lo CC pfile_read_all_begin_f.lo CC pfile_read_all_end_f.lo CC pfile_read_all_f.lo CC pfile_read_at_all_begin_f.lo CC pfile_read_at_all_end_f.lo CC pfile_read_at_all_f.lo CC pfile_read_at_f.lo CC pfile_read_f.lo CC pfile_read_ordered_begin_f.lo CC pfile_read_ordered_end_f.lo CC pfile_read_ordered_f.lo CC pfile_read_shared_f.lo CC pfile_seek_f.lo CC pfile_seek_shared_f.lo CC pfile_set_atomicity_f.lo CC pfile_set_errhandler_f.lo CC pfile_set_info_f.lo CC pfile_set_size_f.lo CC pfile_set_view_f.lo CC pfile_sync_f.lo CC pfile_write_all_begin_f.lo CC pfile_write_all_end_f.lo CC pfile_write_all_f.lo CC pfile_write_at_all_begin_f.lo CC pfile_write_at_all_end_f.lo CC pfile_write_at_all_f.lo CC pfile_write_at_f.lo CC pfile_write_f.lo CC pfile_write_ordered_begin_f.lo CC pfile_write_ordered_end_f.lo CC pfile_write_ordered_f.lo CC pfile_write_shared_f.lo CC pregister_datarep_f.lo FC psizeof_f.lo FCLD libmpi_mpifh_pmpi.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' FC libmpi_mpifh_sizeof_la-sizeof-mpi-pre-1.8.4_f.lo GENERATE sizeof_f.f90 PPFC libmpi_mpifh_sizeof_la-sizeof-mpif08-pre-1.8.4_f.lo FC libmpi_mpifh_sizeof_la-sizeof_f.lo FCLD libmpi_mpifh_sizeof.la CCLD libmpi_mpifh.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpif-h' Making all in mpi/fortran/use-mpi-ignore-tkr make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-ignore-tkr' CC gratuitious-symbol.lo GENERATE mpi-ignore-tkr-sizeof.f90 GENERATE mpi-ignore-tkr-sizeof.h CC usempi-dummy.lo FC mpi-ignore-tkr-sizeof.lo PPFC mpi-ignore-tkr.lo FCLD libmpi_usempi_ignore_tkr.la CCLD libmpi_usempi.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-ignore-tkr' Making all in mpi/fortran/use-mpi-f08 make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-f08' PPFC mpi-f08-types.lo GENERATE sizeof_f08.h GENERATE sizeof_f08.f90 GENERATE profile/psizeof_f08.f90 CC constants.lo FC profile/psizeof_f08.lo FC sizeof_f08.lo PPFC mpi-f08-interfaces-callbacks.lo PPFC mpi-f08-interfaces.lo PPFC pmpi-f08-interfaces.lo FCLD libforce_usempif08_internal_modules_to_be_built.la PPFC mpi-f08.lo PPFC accumulate_f08.lo PPFC add_error_class_f08.lo PPFC add_error_code_f08.lo PPFC add_error_string_f08.lo PPFC abort_f08.lo PPFC allgather_f08.lo PPFC allgatherv_f08.lo PPFC alloc_mem_f08.lo PPFC allreduce_f08.lo PPFC alltoall_f08.lo PPFC alltoallv_f08.lo PPFC alltoallw_f08.lo PPFC barrier_f08.lo PPFC bcast_f08.lo PPFC bsend_f08.lo PPFC bsend_init_f08.lo PPFC buffer_attach_f08.lo PPFC buffer_detach_f08.lo PPFC cart_coords_f08.lo PPFC cart_create_f08.lo PPFC cancel_f08.lo PPFC cartdim_get_f08.lo PPFC cart_map_f08.lo PPFC cart_get_f08.lo PPFC cart_rank_f08.lo PPFC cart_sub_f08.lo PPFC cart_shift_f08.lo PPFC close_port_f08.lo PPFC comm_accept_f08.lo PPFC comm_call_errhandler_f08.lo PPFC comm_compare_f08.lo PPFC comm_create_errhandler_f08.lo PPFC comm_connect_f08.lo PPFC comm_create_f08.lo PPFC comm_create_group_f08.lo PPFC comm_create_keyval_f08.lo PPFC comm_delete_attr_f08.lo PPFC comm_disconnect_f08.lo PPFC comm_dup_f08.lo PPFC comm_dup_with_info_f08.lo PPFC comm_idup_f08.lo PPFC comm_free_f08.lo PPFC comm_free_keyval_f08.lo PPFC comm_get_attr_f08.lo PPFC comm_get_errhandler_f08.lo PPFC comm_get_info_f08.lo PPFC comm_get_name_f08.lo PPFC comm_get_parent_f08.lo PPFC comm_group_f08.lo PPFC comm_rank_f08.lo PPFC comm_join_f08.lo PPFC comm_remote_group_f08.lo PPFC comm_remote_size_f08.lo PPFC comm_set_attr_f08.lo PPFC comm_set_errhandler_f08.lo PPFC comm_set_info_f08.lo PPFC comm_set_name_f08.lo PPFC comm_size_f08.lo PPFC comm_spawn_f08.lo PPFC comm_spawn_multiple_f08.lo PPFC comm_split_f08.lo PPFC comm_split_type_f08.lo PPFC comm_test_inter_f08.lo PPFC compare_and_swap_f08.lo PPFC dist_graph_create_adjacent_f08.lo PPFC dist_graph_create_f08.lo PPFC dist_graph_neighbors_count_f08.lo PPFC dist_graph_neighbors_f08.lo PPFC dims_create_f08.lo PPFC errhandler_free_f08.lo PPFC error_class_f08.lo PPFC error_string_f08.lo PPFC exscan_f08.lo PPFC f_sync_reg_f08.lo PPFC fetch_and_op_f08.lo PPFC finalized_f08.lo PPFC finalize_f08.lo PPFC free_mem_f08.lo PPFC gather_f08.lo PPFC gatherv_f08.lo PPFC get_accumulate_f08.lo PPFC get_address_f08.lo PPFC get_count_f08.lo PPFC get_elements_f08.lo PPFC get_elements_x_f08.lo PPFC get_f08.lo PPFC get_library_version_f08.lo PPFC get_processor_name_f08.lo PPFC get_version_f08.lo PPFC graph_create_f08.lo PPFC graphdims_get_f08.lo PPFC graph_get_f08.lo PPFC graph_map_f08.lo PPFC graph_neighbors_count_f08.lo PPFC grequest_complete_f08.lo PPFC graph_neighbors_f08.lo PPFC grequest_start_f08.lo PPFC group_compare_f08.lo PPFC group_difference_f08.lo PPFC group_excl_f08.lo PPFC group_free_f08.lo PPFC group_incl_f08.lo PPFC group_intersection_f08.lo PPFC group_range_excl_f08.lo PPFC group_range_incl_f08.lo PPFC group_rank_f08.lo PPFC group_size_f08.lo PPFC group_translate_ranks_f08.lo PPFC group_union_f08.lo PPFC iallgather_f08.lo PPFC iallgatherv_f08.lo PPFC iallreduce_f08.lo PPFC ialltoall_f08.lo PPFC ialltoallv_f08.lo PPFC ialltoallw_f08.lo PPFC ibarrier_f08.lo PPFC ibcast_f08.lo PPFC ibsend_f08.lo PPFC iexscan_f08.lo PPFC igather_f08.lo PPFC igatherv_f08.lo PPFC improbe_f08.lo PPFC imrecv_f08.lo PPFC ineighbor_allgather_f08.lo PPFC ineighbor_allgatherv_f08.lo PPFC ineighbor_alltoall_f08.lo PPFC ineighbor_alltoallv_f08.lo PPFC ineighbor_alltoallw_f08.lo PPFC info_create_f08.lo PPFC info_delete_f08.lo PPFC info_dup_f08.lo PPFC info_free_f08.lo PPFC info_get_f08.lo PPFC info_get_nkeys_f08.lo PPFC info_get_nthkey_f08.lo PPFC info_get_valuelen_f08.lo PPFC info_set_f08.lo PPFC init_f08.lo PPFC initialized_f08.lo PPFC init_thread_f08.lo PPFC intercomm_create_f08.lo PPFC intercomm_merge_f08.lo PPFC iprobe_f08.lo PPFC irecv_f08.lo PPFC ireduce_f08.lo PPFC ireduce_scatter_f08.lo PPFC ireduce_scatter_block_f08.lo PPFC irsend_f08.lo PPFC iscan_f08.lo PPFC iscatter_f08.lo PPFC iscatterv_f08.lo PPFC isend_f08.lo PPFC issend_f08.lo PPFC lookup_name_f08.lo PPFC mprobe_f08.lo PPFC is_thread_main_f08.lo PPFC mrecv_f08.lo PPFC neighbor_allgather_f08.lo PPFC neighbor_allgatherv_f08.lo PPFC neighbor_alltoall_f08.lo PPFC neighbor_alltoallv_f08.lo PPFC neighbor_alltoallw_f08.lo PPFC op_commutative_f08.lo PPFC op_create_f08.lo PPFC open_port_f08.lo PPFC op_free_f08.lo PPFC pack_external_f08.lo PPFC pack_external_size_f08.lo PPFC pack_size_f08.lo PPFC pack_f08.lo PPFC pcontrol_f08.lo PPFC probe_f08.lo PPFC publish_name_f08.lo PPFC query_thread_f08.lo PPFC put_f08.lo PPFC raccumulate_f08.lo PPFC recv_f08.lo PPFC recv_init_f08.lo PPFC reduce_f08.lo PPFC reduce_local_f08.lo PPFC reduce_scatter_f08.lo PPFC reduce_scatter_block_f08.lo PPFC request_free_f08.lo PPFC request_get_status_f08.lo PPFC rget_f08.lo PPFC rget_accumulate_f08.lo PPFC rput_f08.lo PPFC rsend_f08.lo PPFC rsend_init_f08.lo PPFC scan_f08.lo PPFC scatter_f08.lo PPFC scatterv_f08.lo PPFC send_f08.lo PPFC send_init_f08.lo PPFC sendrecv_f08.lo PPFC sendrecv_replace_f08.lo PPFC ssend_f08.lo PPFC ssend_init_f08.lo PPFC startall_f08.lo PPFC start_f08.lo PPFC status_set_cancelled_f08.lo PPFC status_set_elements_f08.lo PPFC status_set_elements_x_f08.lo PPFC testall_f08.lo PPFC testany_f08.lo PPFC test_cancelled_f08.lo PPFC test_f08.lo PPFC testsome_f08.lo PPFC topo_test_f08.lo PPFC type_commit_f08.lo PPFC type_contiguous_f08.lo PPFC type_create_darray_f08.lo PPFC type_create_f90_complex_f08.lo PPFC type_create_f90_integer_f08.lo PPFC type_create_f90_real_f08.lo PPFC type_create_hindexed_f08.lo PPFC type_create_hvector_f08.lo PPFC type_create_hindexed_block_f08.lo PPFC type_create_indexed_block_f08.lo PPFC type_create_keyval_f08.lo PPFC type_create_resized_f08.lo PPFC type_create_struct_f08.lo PPFC type_create_subarray_f08.lo PPFC type_delete_attr_f08.lo PPFC type_dup_f08.lo PPFC type_free_f08.lo PPFC type_free_keyval_f08.lo PPFC type_get_attr_f08.lo PPFC type_get_contents_f08.lo PPFC type_get_envelope_f08.lo PPFC type_get_extent_f08.lo PPFC type_get_extent_x_f08.lo PPFC type_get_name_f08.lo PPFC type_get_true_extent_f08.lo PPFC type_get_true_extent_x_f08.lo PPFC type_indexed_f08.lo PPFC type_match_size_f08.lo PPFC type_set_attr_f08.lo PPFC type_set_name_f08.lo PPFC type_size_f08.lo PPFC type_vector_f08.lo PPFC unpack_external_f08.lo PPFC unpack_f08.lo PPFC unpublish_name_f08.lo PPFC waitall_f08.lo PPFC waitany_f08.lo PPFC wait_f08.lo PPFC waitsome_f08.lo PPFC win_allocate_f08.lo PPFC win_allocate_shared_f08.lo PPFC win_call_errhandler_f08.lo PPFC win_complete_f08.lo PPFC win_create_f08.lo PPFC win_create_errhandler_f08.lo PPFC win_create_keyval_f08.lo PPFC win_delete_attr_f08.lo PPFC win_fence_f08.lo PPFC win_flush_f08.lo PPFC win_flush_all_f08.lo PPFC win_flush_local_f08.lo PPFC win_flush_local_all_f08.lo PPFC win_free_f08.lo PPFC win_free_keyval_f08.lo PPFC win_get_attr_f08.lo PPFC win_get_group_f08.lo PPFC win_get_errhandler_f08.lo PPFC win_get_name_f08.lo PPFC win_lock_f08.lo PPFC win_lock_all_f08.lo PPFC win_post_f08.lo PPFC win_set_attr_f08.lo PPFC win_set_errhandler_f08.lo PPFC win_set_name_f08.lo PPFC win_shared_query_f08.lo PPFC win_start_f08.lo PPFC win_sync_f08.lo PPFC win_test_f08.lo PPFC win_unlock_f08.lo PPFC win_unlock_all_f08.lo PPFC win_wait_f08.lo PPFC file_call_errhandler_f08.lo PPFC file_close_f08.lo PPFC file_create_errhandler_f08.lo PPFC file_delete_f08.lo PPFC file_get_amode_f08.lo PPFC file_get_atomicity_f08.lo PPFC file_get_byte_offset_f08.lo PPFC file_get_errhandler_f08.lo PPFC file_get_group_f08.lo PPFC file_get_info_f08.lo PPFC file_get_position_f08.lo PPFC file_get_position_shared_f08.lo PPFC file_get_size_f08.lo PPFC file_get_type_extent_f08.lo PPFC file_get_view_f08.lo PPFC file_iread_at_f08.lo PPFC file_iread_f08.lo PPFC file_iread_shared_f08.lo PPFC file_iwrite_at_f08.lo PPFC file_iwrite_f08.lo PPFC file_iwrite_shared_f08.lo PPFC file_open_f08.lo PPFC file_preallocate_f08.lo PPFC file_read_all_begin_f08.lo PPFC file_read_all_end_f08.lo PPFC file_read_all_f08.lo PPFC file_read_at_all_begin_f08.lo PPFC file_read_at_all_end_f08.lo PPFC file_read_at_all_f08.lo PPFC file_read_at_f08.lo PPFC file_read_f08.lo PPFC file_read_ordered_begin_f08.lo PPFC file_read_ordered_end_f08.lo PPFC file_read_ordered_f08.lo PPFC file_read_shared_f08.lo PPFC file_seek_f08.lo PPFC file_seek_shared_f08.lo PPFC file_set_atomicity_f08.lo PPFC file_set_errhandler_f08.lo PPFC file_set_info_f08.lo PPFC file_set_size_f08.lo PPFC file_set_view_f08.lo PPFC file_sync_f08.lo PPFC file_write_all_begin_f08.lo PPFC file_write_all_end_f08.lo PPFC file_write_all_f08.lo PPFC file_write_at_all_begin_f08.lo PPFC file_write_at_all_end_f08.lo PPFC file_write_at_all_f08.lo PPFC file_write_at_f08.lo PPFC file_write_f08.lo PPFC file_write_ordered_begin_f08.lo PPFC file_write_ordered_end_f08.lo PPFC file_write_ordered_f08.lo PPFC file_write_shared_f08.lo PPFC register_datarep_f08.lo PPFC profile/pabort_f08.lo PPFC profile/paccumulate_f08.lo PPFC profile/padd_error_class_f08.lo PPFC profile/padd_error_code_f08.lo PPFC profile/padd_error_string_f08.lo PPFC profile/pallgather_f08.lo PPFC profile/pallgatherv_f08.lo PPFC profile/palloc_mem_f08.lo PPFC profile/pallreduce_f08.lo PPFC profile/palltoall_f08.lo PPFC profile/palltoallv_f08.lo PPFC profile/palltoallw_f08.lo PPFC profile/pbarrier_f08.lo PPFC profile/pbcast_f08.lo PPFC profile/pbsend_f08.lo PPFC profile/pbsend_init_f08.lo PPFC profile/pbuffer_attach_f08.lo PPFC profile/pbuffer_detach_f08.lo PPFC profile/pcancel_f08.lo PPFC profile/pcart_coords_f08.lo PPFC profile/pcart_create_f08.lo PPFC profile/pcartdim_get_f08.lo PPFC profile/pcart_get_f08.lo PPFC profile/pcart_map_f08.lo PPFC profile/pcart_rank_f08.lo PPFC profile/pcart_shift_f08.lo PPFC profile/pcart_sub_f08.lo PPFC profile/pclose_port_f08.lo PPFC profile/pcomm_accept_f08.lo PPFC profile/pcomm_call_errhandler_f08.lo PPFC profile/pcomm_compare_f08.lo PPFC profile/pcomm_connect_f08.lo PPFC profile/pcomm_create_errhandler_f08.lo PPFC profile/pcomm_create_f08.lo PPFC profile/pcomm_create_group_f08.lo PPFC profile/pcomm_create_keyval_f08.lo PPFC profile/pcomm_delete_attr_f08.lo PPFC profile/pcomm_disconnect_f08.lo PPFC profile/pcomm_dup_f08.lo PPFC profile/pcomm_dup_with_info_f08.lo PPFC profile/pcomm_idup_f08.lo PPFC profile/pcomm_free_f08.lo PPFC profile/pcomm_free_keyval_f08.lo PPFC profile/pcomm_get_attr_f08.lo PPFC profile/pcomm_get_errhandler_f08.lo PPFC profile/pcomm_get_info_f08.lo PPFC profile/pcomm_get_name_f08.lo PPFC profile/pcomm_get_parent_f08.lo PPFC profile/pcomm_group_f08.lo PPFC profile/pcomm_join_f08.lo PPFC profile/pcomm_rank_f08.lo PPFC profile/pcomm_remote_group_f08.lo PPFC profile/pcomm_remote_size_f08.lo PPFC profile/pcomm_set_attr_f08.lo PPFC profile/pcomm_set_errhandler_f08.lo PPFC profile/pcomm_set_info_f08.lo PPFC profile/pcomm_set_name_f08.lo PPFC profile/pcomm_size_f08.lo PPFC profile/pcomm_spawn_f08.lo PPFC profile/pcomm_split_f08.lo PPFC profile/pcomm_spawn_multiple_f08.lo PPFC profile/pcomm_split_type_f08.lo PPFC profile/pcomm_test_inter_f08.lo PPFC profile/pcompare_and_swap_f08.lo PPFC profile/pdims_create_f08.lo PPFC profile/pdist_graph_create_adjacent_f08.lo PPFC profile/pdist_graph_create_f08.lo PPFC profile/pdist_graph_neighbors_count_f08.lo PPFC profile/pdist_graph_neighbors_f08.lo PPFC profile/perrhandler_free_f08.lo PPFC profile/perror_class_f08.lo PPFC profile/perror_string_f08.lo PPFC profile/pexscan_f08.lo PPFC profile/pf_sync_reg_f08.lo PPFC profile/pfetch_and_op_f08.lo PPFC profile/pfinalized_f08.lo PPFC profile/pfinalize_f08.lo PPFC profile/pfree_mem_f08.lo PPFC profile/pgather_f08.lo PPFC profile/pgatherv_f08.lo PPFC profile/pget_accumulate_f08.lo PPFC profile/pget_address_f08.lo PPFC profile/pget_count_f08.lo PPFC profile/pget_elements_f08.lo PPFC profile/pget_f08.lo PPFC profile/pget_elements_x_f08.lo PPFC profile/pget_processor_name_f08.lo PPFC profile/pget_version_f08.lo PPFC profile/pgraph_create_f08.lo PPFC profile/pgraphdims_get_f08.lo PPFC profile/pgraph_get_f08.lo PPFC profile/pgraph_map_f08.lo PPFC profile/pgraph_neighbors_count_f08.lo PPFC profile/pgraph_neighbors_f08.lo PPFC profile/pgrequest_complete_f08.lo PPFC profile/pgrequest_start_f08.lo PPFC profile/pgroup_compare_f08.lo PPFC profile/pgroup_difference_f08.lo PPFC profile/pgroup_excl_f08.lo PPFC profile/pgroup_free_f08.lo PPFC profile/pgroup_incl_f08.lo PPFC profile/pgroup_intersection_f08.lo PPFC profile/pgroup_range_excl_f08.lo PPFC profile/pgroup_range_incl_f08.lo PPFC profile/pgroup_rank_f08.lo PPFC profile/pgroup_size_f08.lo PPFC profile/pgroup_translate_ranks_f08.lo PPFC profile/pgroup_union_f08.lo PPFC profile/piallgather_f08.lo PPFC profile/piallgatherv_f08.lo PPFC profile/piallreduce_f08.lo PPFC profile/pialltoall_f08.lo PPFC profile/pialltoallv_f08.lo PPFC profile/pialltoallw_f08.lo PPFC profile/pibarrier_f08.lo PPFC profile/pibcast_f08.lo PPFC profile/pibsend_f08.lo PPFC profile/pigather_f08.lo PPFC profile/pigatherv_f08.lo PPFC profile/piexscan_f08.lo PPFC profile/pimprobe_f08.lo PPFC profile/pimrecv_f08.lo PPFC profile/pineighbor_allgather_f08.lo PPFC profile/pineighbor_allgatherv_f08.lo PPFC profile/pineighbor_alltoall_f08.lo PPFC profile/pineighbor_alltoallv_f08.lo PPFC profile/pineighbor_alltoallw_f08.lo PPFC profile/pinfo_create_f08.lo PPFC profile/pinfo_delete_f08.lo PPFC profile/pinfo_dup_f08.lo PPFC profile/pinfo_get_f08.lo PPFC profile/pinfo_free_f08.lo PPFC profile/pinfo_get_nkeys_f08.lo PPFC profile/pinfo_get_nthkey_f08.lo PPFC profile/pinfo_get_valuelen_f08.lo PPFC profile/pinfo_set_f08.lo PPFC profile/pinit_f08.lo PPFC profile/pinitialized_f08.lo PPFC profile/pinit_thread_f08.lo PPFC profile/pintercomm_create_f08.lo PPFC profile/pintercomm_merge_f08.lo PPFC profile/piprobe_f08.lo PPFC profile/pirecv_f08.lo PPFC profile/pireduce_f08.lo PPFC profile/pireduce_scatter_f08.lo PPFC profile/pireduce_scatter_block_f08.lo PPFC profile/pirsend_f08.lo PPFC profile/piscan_f08.lo PPFC profile/piscatter_f08.lo PPFC profile/piscatterv_f08.lo PPFC profile/pisend_f08.lo PPFC profile/pissend_f08.lo PPFC profile/pis_thread_main_f08.lo PPFC profile/plookup_name_f08.lo PPFC profile/pmprobe_f08.lo PPFC profile/pmrecv_f08.lo PPFC profile/pneighbor_allgather_f08.lo PPFC profile/pneighbor_allgatherv_f08.lo PPFC profile/pneighbor_alltoall_f08.lo PPFC profile/pneighbor_alltoallv_f08.lo PPFC profile/pneighbor_alltoallw_f08.lo PPFC profile/pop_commutative_f08.lo PPFC profile/pop_create_f08.lo PPFC profile/popen_port_f08.lo PPFC profile/pop_free_f08.lo PPFC profile/ppack_external_f08.lo PPFC profile/ppack_external_size_f08.lo PPFC profile/ppack_f08.lo PPFC profile/ppack_size_f08.lo PPFC profile/ppcontrol_f08.lo PPFC profile/pprobe_f08.lo PPFC profile/ppublish_name_f08.lo PPFC profile/pput_f08.lo PPFC profile/pquery_thread_f08.lo PPFC profile/praccumulate_f08.lo PPFC profile/precv_f08.lo PPFC profile/precv_init_f08.lo PPFC profile/preduce_f08.lo PPFC profile/preduce_local_f08.lo PPFC profile/preduce_scatter_f08.lo PPFC profile/preduce_scatter_block_f08.lo PPFC profile/prequest_free_f08.lo PPFC profile/prequest_get_status_f08.lo PPFC profile/prget_f08.lo PPFC profile/prget_accumulate_f08.lo PPFC profile/prsend_f08.lo PPFC profile/prput_f08.lo PPFC profile/prsend_init_f08.lo PPFC profile/pscan_f08.lo PPFC profile/pscatter_f08.lo PPFC profile/pscatterv_f08.lo PPFC profile/psend_f08.lo PPFC profile/psend_init_f08.lo PPFC profile/psendrecv_f08.lo PPFC profile/psendrecv_replace_f08.lo PPFC profile/pssend_init_f08.lo PPFC profile/pssend_f08.lo PPFC profile/pstartall_f08.lo PPFC profile/pstart_f08.lo PPFC profile/pstatus_set_cancelled_f08.lo PPFC profile/pstatus_set_elements_f08.lo PPFC profile/pstatus_set_elements_x_f08.lo PPFC profile/ptestall_f08.lo PPFC profile/ptestany_f08.lo PPFC profile/ptest_cancelled_f08.lo PPFC profile/ptest_f08.lo PPFC profile/ptestsome_f08.lo PPFC profile/ptopo_test_f08.lo PPFC profile/ptype_commit_f08.lo PPFC profile/ptype_contiguous_f08.lo PPFC profile/ptype_create_darray_f08.lo PPFC profile/ptype_create_f90_complex_f08.lo PPFC profile/ptype_create_f90_integer_f08.lo PPFC profile/ptype_create_f90_real_f08.lo PPFC profile/ptype_create_hindexed_f08.lo PPFC profile/ptype_create_hvector_f08.lo PPFC profile/ptype_create_indexed_block_f08.lo PPFC profile/ptype_create_hindexed_block_f08.lo PPFC profile/ptype_create_struct_f08.lo PPFC profile/ptype_create_resized_f08.lo PPFC profile/ptype_create_subarray_f08.lo PPFC profile/ptype_delete_attr_f08.lo PPFC profile/ptype_create_keyval_f08.lo PPFC profile/ptype_dup_f08.lo PPFC profile/ptype_free_f08.lo PPFC profile/ptype_free_keyval_f08.lo PPFC profile/ptype_get_attr_f08.lo PPFC profile/ptype_get_contents_f08.lo PPFC profile/ptype_get_envelope_f08.lo PPFC profile/ptype_get_extent_f08.lo PPFC profile/ptype_get_extent_x_f08.lo PPFC profile/ptype_get_name_f08.lo PPFC profile/ptype_get_true_extent_f08.lo PPFC profile/ptype_get_true_extent_x_f08.lo PPFC profile/ptype_indexed_f08.lo PPFC profile/ptype_match_size_f08.lo PPFC profile/ptype_set_attr_f08.lo PPFC profile/ptype_set_name_f08.lo PPFC profile/ptype_size_f08.lo PPFC profile/ptype_size_x_f08.lo PPFC profile/ptype_vector_f08.lo PPFC profile/punpack_external_f08.lo PPFC profile/punpack_f08.lo PPFC profile/punpublish_name_f08.lo PPFC profile/pwaitall_f08.lo PPFC profile/pwaitany_f08.lo PPFC profile/pwait_f08.lo PPFC profile/pwaitsome_f08.lo PPFC profile/pwin_allocate_f08.lo PPFC profile/pwin_allocate_shared_f08.lo PPFC profile/pwin_call_errhandler_f08.lo PPFC profile/pwin_complete_f08.lo PPFC profile/pwin_create_f08.lo PPFC profile/pwin_create_errhandler_f08.lo PPFC profile/pwin_create_keyval_f08.lo PPFC profile/pwin_delete_attr_f08.lo PPFC profile/pwin_fence_f08.lo PPFC profile/pwin_flush_f08.lo PPFC profile/pwin_flush_all_f08.lo PPFC profile/pwin_flush_local_f08.lo PPFC profile/pwin_flush_local_all_f08.lo PPFC profile/pwin_free_f08.lo PPFC profile/pwin_free_keyval_f08.lo PPFC profile/pwin_get_attr_f08.lo PPFC profile/pwin_get_errhandler_f08.lo PPFC profile/pwin_get_group_f08.lo PPFC profile/pwin_get_name_f08.lo PPFC profile/pwin_lock_f08.lo PPFC profile/pwin_lock_all_f08.lo PPFC profile/pwin_post_f08.lo PPFC profile/pwin_set_attr_f08.lo PPFC profile/pwin_set_errhandler_f08.lo PPFC profile/pwin_set_name_f08.lo PPFC profile/pwin_shared_query_f08.lo PPFC profile/pwin_start_f08.lo PPFC profile/pwin_sync_f08.lo PPFC profile/pwin_test_f08.lo PPFC profile/pwin_unlock_f08.lo PPFC profile/pwin_unlock_all_f08.lo PPFC profile/pwin_wait_f08.lo PPFC profile/pfile_call_errhandler_f08.lo PPFC profile/pfile_close_f08.lo PPFC profile/pfile_create_errhandler_f08.lo PPFC profile/pfile_delete_f08.lo PPFC profile/pfile_get_amode_f08.lo PPFC profile/pfile_get_atomicity_f08.lo PPFC profile/pfile_get_byte_offset_f08.lo PPFC profile/pfile_get_errhandler_f08.lo PPFC profile/pfile_get_group_f08.lo PPFC profile/pfile_get_info_f08.lo PPFC profile/pfile_get_position_f08.lo PPFC profile/pfile_get_position_shared_f08.lo PPFC profile/pfile_get_size_f08.lo PPFC profile/pfile_get_type_extent_f08.lo PPFC profile/pfile_get_view_f08.lo PPFC profile/pfile_iread_at_f08.lo PPFC profile/pfile_iread_f08.lo PPFC profile/pfile_iread_shared_f08.lo PPFC profile/pfile_iwrite_at_f08.lo PPFC profile/pfile_iwrite_f08.lo PPFC profile/pfile_iwrite_shared_f08.lo PPFC profile/pfile_open_f08.lo PPFC profile/pfile_preallocate_f08.lo PPFC profile/pfile_read_all_begin_f08.lo PPFC profile/pfile_read_all_end_f08.lo PPFC profile/pfile_read_all_f08.lo PPFC profile/pfile_read_at_all_begin_f08.lo PPFC profile/pfile_read_at_all_end_f08.lo PPFC profile/pfile_read_at_all_f08.lo PPFC profile/pfile_read_at_f08.lo PPFC profile/pfile_read_f08.lo PPFC profile/pfile_read_ordered_begin_f08.lo PPFC profile/pfile_read_ordered_end_f08.lo PPFC profile/pfile_read_ordered_f08.lo PPFC profile/pfile_read_shared_f08.lo PPFC profile/pfile_seek_f08.lo PPFC profile/pfile_seek_shared_f08.lo PPFC profile/pfile_set_atomicity_f08.lo PPFC profile/pfile_set_errhandler_f08.lo PPFC profile/pfile_set_info_f08.lo PPFC profile/pfile_set_size_f08.lo PPFC profile/pfile_set_view_f08.lo PPFC profile/pfile_write_all_begin_f08.lo PPFC profile/pfile_sync_f08.lo PPFC profile/pfile_write_all_end_f08.lo PPFC profile/pfile_write_all_f08.lo PPFC profile/pfile_write_at_all_begin_f08.lo PPFC profile/pfile_write_at_all_end_f08.lo PPFC profile/pfile_write_at_all_f08.lo PPFC profile/pfile_write_at_f08.lo PPFC profile/pfile_write_f08.lo PPFC profile/pfile_write_ordered_begin_f08.lo PPFC profile/pfile_write_ordered_end_f08.lo PPFC profile/pfile_write_ordered_f08.lo PPFC profile/pfile_write_shared_f08.lo PPFC profile/pregister_datarep_f08.lo FCLD libmpi_usempif08.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/use-mpi-f08' Making all in mpi/fortran/mpiext make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpiext' PPFC mpi-ext-module.lo PPFC mpi-f08-ext-module.lo FCLD libforce_usempi_module_to_be_built.la FCLD libforce_usempif08_module_to_be_built.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/mpi/fortran/mpiext' Making all in contrib/libompitrace make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/contrib/libompitrace' CC abort.lo CC accumulate.lo CC add_error_class.lo CC add_error_code.lo CC add_error_string.lo CC address.lo CC allgather.lo CC allgatherv.lo CC alloc_mem.lo CC allreduce.lo CC bcast.lo CC barrier.lo CC finalize.lo CC init.lo CC isend.lo CC recv.lo CC reduce.lo CC request_free.lo CC send.lo CC sendrecv.lo CCLD libompitrace.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/contrib/libompitrace' Making all in tools/ompi_info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/ompi_info' CC ompi_info.o CC param.o CCLD ompi_info make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/ompi_info' Making all in tools/wrappers make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/wrappers' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi/tools/wrappers' make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/ompi' Making all in oshmem make[1]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Making all in include make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' /usr/bin/make all-am make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/include' Making all in shmem/c make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c/profile' CC pshmem_init.lo CC pshmem_finalize.lo CC pshmem_free.lo CC pshmem_alloc.lo CC pshmem_realloc.lo CC pshmem_align.lo CC pshmem_query.lo CC pshmem_p.lo CC pshmem_put.lo CC pshmem_g.lo CC pshmem_get.lo CC pshmem_broadcast.lo CC pshmem_collect.lo CC pshmem_ptr.lo CC pshmem_pe_accessible.lo CC pshmem_addr_accessible.lo CC pshmem_barrier.lo CC pshmem_fence.lo CC pshmem_quiet.lo CC pshmem_wait.lo CC pshmem_iget.lo CC pshmem_iput.lo CC pshmem_udcflush.lo CC pshmem_udcflush_line.lo CC pshmem_set_cache_inv.lo CC pshmem_set_cache_line_inv.lo CC pshmem_clear_cache_inv.lo CC pshmem_clear_cache_line_inv.lo CC pshmem_reduce.lo CC pshmem_swap.lo CC pshmem_cswap.lo CC pshmem_fadd.lo CC pshmem_finc.lo CC pshmem_add.lo CC pshmem_inc.lo CC pshmem_clear_lock.lo CC pshmem_set_lock.lo CC pshmem_test_lock.lo CCLD liboshmem_c_pshmem.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' CC shmem_lock.lo CC globalexit.lo CCLD liboshmem_c.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/c' Making all in shmem/fortran make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' Making all in profile make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran/profile' CC pstart_pes_f.lo CC pnum_pes_f.lo CC pmy_pe_f.lo CC pshmem_barrier_all_f.lo CC pshpalloc_f.lo CC pshpdeallc_f.lo CC pshpclmove_f.lo CC pshmem_ptr_f.lo CC pshmem_pe_accessible_f.lo CC pshmem_addr_accessible_f.lo CC pshmem_put_f.lo CC pshmem_character_put_f.lo CC pshmem_double_put_f.lo CC pshmem_complex_put_f.lo CC pshmem_logical_put_f.lo CC pshmem_integer_put_f.lo CC pshmem_real_put_f.lo CC pshmem_put4_f.lo CC pshmem_put8_f.lo CC pshmem_put32_f.lo CC pshmem_put64_f.lo CC pshmem_put128_f.lo CC pshmem_putmem_f.lo CC pshmem_complex_iput_f.lo CC pshmem_double_iput_f.lo CC pshmem_integer_iput_f.lo CC pshmem_iput128_f.lo CC pshmem_iput32_f.lo CC pshmem_iput4_f.lo CC pshmem_iput64_f.lo CC pshmem_iput8_f.lo CC pshmem_logical_iput_f.lo CC pshmem_character_get_f.lo CC pshmem_real_iput_f.lo CC pshmem_complex_get_f.lo CC pshmem_double_get_f.lo CC pshmem_get128_f.lo CC pshmem_get32_f.lo CC pshmem_get4_f.lo CC pshmem_get64_f.lo CC pshmem_get8_f.lo CC pshmem_getmem_f.lo CC pshmem_integer_get_f.lo CC pshmem_logical_get_f.lo CC pshmem_real_get_f.lo CC pshmem_complex_iget_f.lo CC pshmem_double_iget_f.lo CC pshmem_iget128_f.lo CC pshmem_iget32_f.lo CC pshmem_iget4_f.lo CC pshmem_iget64_f.lo CC pshmem_iget8_f.lo CC pshmem_integer_iget_f.lo CC pshmem_logical_iget_f.lo CC pshmem_real_iget_f.lo CC pshmem_swap_f.lo CC pshmem_int4_swap_f.lo CC pshmem_int8_swap_f.lo CC pshmem_real4_swap_f.lo CC pshmem_real8_swap_f.lo CC pshmem_int4_cswap_f.lo CC pshmem_int8_cswap_f.lo CC pshmem_int4_fadd_f.lo CC pshmem_int8_fadd_f.lo CC pshmem_int4_finc_f.lo CC pshmem_int8_finc_f.lo CC pshmem_int4_add_f.lo CC pshmem_int8_add_f.lo CC pshmem_int4_wait_f.lo CC pshmem_int8_wait_f.lo CC pshmem_wait_f.lo CC pshmem_int4_wait_until_f.lo CC pshmem_int8_wait_until_f.lo CC pshmem_wait_until_f.lo CC pshmem_barrier_f.lo CC pshmem_and_to_all_f.lo CC pshmem_or_to_all_f.lo CC pshmem_xor_to_all_f.lo CC pshmem_max_to_all_f.lo CC pshmem_min_to_all_f.lo CC pshmem_sum_to_all_f.lo CC pshmem_prod_to_all_f.lo CC pshmem_collect_f.lo CC pshmem_broadcast_f.lo CC pshmem_lock_f.lo CC pshmem_cache_f.lo CC pshmem_int4_inc_f.lo CC pshmem_int8_inc_f.lo CC pshmem_quiet_f.lo CC pshmem_fence_f.lo CCLD liboshmem_fortran_pshmem.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran/profile' make[3]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' CC shmem_finalize_f.lo CCLD liboshmem_fortran.la make[3]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/shmem/fortran' Making all in mca/atomic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic' CC base/atomic_base_frame.lo CC base/atomic_base_available.lo CC base/atomic_base_select.lo CCLD libmca_atomic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic' Making all in mca/memheap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap' CC base/memheap_base_frame.lo CC base/memheap_base_select.lo CC base/memheap_base_alloc.lo CC base/memheap_base_static.lo CC base/memheap_base_register.lo CC base/memheap_base_mkey.lo CCLD libmca_memheap.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap' Making all in mca/scoll make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll' CC base/scoll_base_frame.lo CC base/scoll_base_available.lo CC base/scoll_base_select.lo CCLD libmca_scoll.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll' Making all in mca/spml make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml' CC base/spml_base_frame.lo CC base/spml_base_select.lo CC base/spml_base_request.lo CC base/spml_base_atomicreq.lo CC base/spml_base_getreq.lo CC base/spml_base_putreq.lo CC base/spml_base.lo CCLD libmca_spml.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml' Making all in mca/sshmem make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem' CC base/sshmem_base_close.lo CC base/sshmem_base_select.lo CC base/sshmem_base_open.lo CC base/sshmem_base_wrappers.lo CCLD libmca_sshmem.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem' Making all in mca/atomic/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic/basic' CC atomic_basic_module.lo CC atomic_basic_component.lo CC atomic_basic_fadd.lo CC atomic_basic_cswap.lo CCLD libmca_atomic_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/atomic/basic' Making all in mca/memheap/ptmalloc make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/ptmalloc' CC malloc.lo CC memheap_ptmalloc.lo CC memheap_ptmalloc_component.lo CCLD libmca_memheap_ptmalloc.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/ptmalloc' Making all in mca/memheap/buddy make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/buddy' CC memheap_buddy.lo CC memheap_buddy_component.lo CCLD libmca_memheap_buddy.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/memheap/buddy' Making all in mca/scoll/basic make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/basic' CC scoll_basic_module.lo CC scoll_basic_component.lo CC scoll_basic_barrier.lo CC scoll_basic_broadcast.lo CC scoll_basic_collect.lo CC scoll_basic_reduce.lo CCLD libmca_scoll_basic.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/basic' Making all in mca/scoll/mpi make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/mpi' CC scoll_mpi_module.lo CC scoll_mpi_component.lo CC scoll_mpi_ops.lo CCLD libmca_scoll_mpi.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/scoll/mpi' Making all in mca/spml/yoda make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml/yoda' CC spml_yoda.lo CC spml_yoda_component.lo CC spml_yoda_putreq.lo CC spml_yoda_getreq.lo CCLD libmca_spml_yoda.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/spml/yoda' Making all in mca/sshmem/mmap make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/mmap' CC sshmem_mmap_component.lo CC sshmem_mmap_module.lo CCLD libmca_sshmem_mmap.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/mmap' Making all in mca/sshmem/sysv make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/sysv' CC sshmem_sysv_component.lo CC sshmem_sysv_module.lo CCLD libmca_sshmem_sysv.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/mca/sshmem/sysv' Making all in . make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' CC op/op.lo CC proc/proc.lo CC proc/proc_group_cache.lo CC request/request.lo CC runtime/oshmem_shmem_init.lo CC runtime/oshmem_shmem_finalize.lo CC runtime/oshmem_shmem_abort.lo CC runtime/oshmem_shmem_params.lo CC runtime/oshmem_shmem_exchange.lo CC runtime/oshmem_info_support.lo CC util/oshmem_util.lo CCLD liboshmem.la make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Making all in tools/oshmem_info make[2]: Entering directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/tools/oshmem_info' CC oshmem_info.o CC param.o CCLD oshmem_info Makefile:1671: recipe for target 'oshmem_info' failed make[2]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem/tools/oshmem_info' Makefile:2000: recipe for target 'all-recursive' failed make[1]: Leaving directory '/home/lukas/gtectonTest/petsc-3.8.2/linux-gnu-x86_64/externalpackages/openmpi-1.8.5/oshmem' Makefile:1698: recipe for target 'all-recursive' failed/usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U')`u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ar: `u' modifier ignored since `D' is the default (see `U') /usr/bin/ld: ../../../oshmem/.libs/liboshmem.a(memheap_base_static.o): undefined reference to symbol '_end' //usr/lib/x86_64-linux-gnu/libnl-route-3.so.200: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status make[2]: *** [oshmem_info] Error 1 make[1]: *** [all-recursive] Error 1 make: *** [all-recursive] Error 1 ******************************************************************************* File "./config/configure.py", line 393, in petsc_configure framework.configure(out = sys.stdout) File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/framework.py", line 1097, in configure self.processChildren() File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/framework.py", line 1086, in processChildren self.serialEvaluation(self.childGraph) File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/framework.py", line 1067, in serialEvaluation child.configure() File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/package.py", line 857, in configure self.executeTest(self.configureLibrary) File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/package.py", line 751, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/package.py", line 354, in generateGuesses d = self.checkDownload() File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/packages/OpenMPI.py", line 41, in checkDownload return self.getInstallDir() File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/package.py", line 303, in getInstallDir installDir = self.Install() File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/packages/OpenMPI.py", line 46, in Install installDir = config.package.GNUPackage.Install(self) File "/home/lukas/gtectonTest/petsc-3.8.2/config/BuildSystem/config/package.py", line 1331, in Install raise RuntimeError('Error running make; make install on '+self.PACKAGE+': '+str(e)) ================================================================================ Finishing Configure Run at Mon Nov 27 12:39:05 2017 ================================================================================