<html>
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
</head>
<body text="#000000" bgcolor="#FFFFFF">
<div class="moz-cite-prefix">Le 23/11/2017 à 13:45, Matthew Knepley
a écrit :<br>
</div>
<blockquote type="cite"
cite="mid:CAMYG4G=Mi_gfeu8aM-jMLx_Zxk1nyk69QOWOjKga1W2deO3GmQ@mail.gmail.com">
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<div dir="ltr">
<div class="gmail_extra">
<div class="gmail_quote">On Thu, Nov 23, 2017 at 3:39 AM, Yann
Jobic <span dir="ltr"><<a
href="mailto:yann.jobic@univ-amu.fr" target="_blank"
moz-do-not-send="true">yann.jobic@univ-amu.fr</a>></span>
wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
<div class="m_2693683614766768657moz-cite-prefix">Hello,<br>
<br>
I checked out the branch
knepley/fix-plex-bc-multiple, but i now have a strange
problem.<br>
I splited my labels as in ex69.c of snes. It may be
the right way to do it.<br>
In petsc 3.8.2, i have the same behavior as before,
the element containing the face is called by
PetscDSAddBoundary.<br>
In the git version, PetscDSAddBoundary does not call
my boundary function at all.<br>
The call :<br>
ierr = PetscDSAddBoundary(prob, DM_BC_ESSENTIAL,
"wallL", "markerLeft", 0, Ncomp, components, (void
(*)(void)) uIn, 1, &id, ctx);CHKERRQ(ierr);<br>
<br>
I checked that my labels are correct :<br>
markerLeft: 1 strata with value/size (1 (11))<br>
markerTop: 1 strata with value/size (1 (11))<br>
markerRight: 1 strata with value/size (1 (11))<br>
markerBottom: 1 strata with value/size (1 (11))<br>
<br>
What am i doing wrong ?<br>
</div>
</div>
</blockquote>
<div><br>
</div>
<div>So you call AddBoundary() and then the boundary values
are never inserted? The call looks correct. Can you send
me an example to check?</div>
<div>Obviously this works for my simple examples in the
repo. I can't see by looking what might be wrong for you.</div>
</div>
</div>
</div>
</blockquote>
Hello,<br>
I may have the wrong git directory.<br>
I've got the message when i'm compiling :<br>
The version of PETSc you are using is out-of-date, we recommend
updating to the new release<br>
Available Version: 3.8.2 Installed Version: 3.8<br>
<br>
As i'm not familiar with git, I've done :<br>
git clone <a class="moz-txt-link-freetext" href="https://bitbucket.org/petsc/petsc">https://bitbucket.org/petsc/petsc</a><br>
git checkout knepley/fix-plex-bc-multiple<br>
<br>
With this petsc version, ex46 and ex47 are not working (from TS),
and after calling PetscDSAddBoundary, it seems that the boundary
values are never inserted, as in my own code.<br>
<br>
Do i have the right petsc development version ?<br>
<br>
Thanks,<br>
<br>
Regards,<br>
<br>
Yann<br>
<br>
PS : In my old code, i've tried to mix ex56 and ex69 for marking
boundary values. <br>
I first set labels for "Faces", and using this label, i create new
separated ones (North, South, ...).<br>
It worked in sequential, but in parallel, the program hang at
DMPlexCreateClosureIndex.<br>
So i just kept "Faces", as in ex56, and it worked in parallel.<br>
<br>
<blockquote type="cite"
cite="mid:CAMYG4G=Mi_gfeu8aM-jMLx_Zxk1nyk69QOWOjKga1W2deO3GmQ@mail.gmail.com">
<div dir="ltr">
<div class="gmail_extra">
<div class="gmail_quote">
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote" style="margin:0 0 0
.8ex;border-left:1px #ccc solid;padding-left:1ex">
<div text="#000000" bgcolor="#FFFFFF">
<div class="m_2693683614766768657moz-cite-prefix">
Thanks,<br>
<br>
Regards,<span class=""><br>
<br>
Yann<br>
<br>
Le 22/11/2017 à 18:51, Matthew Knepley a écrit :<br>
</span></div>
<div>
<div class="h5">
<blockquote type="cite">
<div dir="ltr">
<div class="gmail_extra">
<div class="gmail_quote">On Wed, Nov 22, 2017
at 12:39 PM, Yann Jobic <span dir="ltr"><<a
href="mailto:yann.jobic@univ-amu.fr"
target="_blank" moz-do-not-send="true">yann.jobic@univ-amu.fr</a>></span>
wrote:<br>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;border-left:1px
#ccc solid;padding-left:1ex">Hello,<br>
<br>
I've found a strange behavior when looking
into a bug for the pressure convergence of
a simple Navier-Stokes problem using
PetscFE.<br>
<br>
I followed many examples for labeling
boundary faces. I first use
DMPlexMarkBoundaryFaces, (label=1 to the
faces).<br>
I find those faces using DMGetStratumIS
and searching 1 as it is the value of the
marked boundary faces.<br>
Finally i use DMPlexLabelComplete over the
new label.<br>
I then use :<br>
ierr = PetscDSAddBoundary(prob,
DM_BC_ESSENTIAL, "in", "Faces", 0, Ncomp,
components, (void (*)(void)) uIn, NWest,
west, NULL);CHKERRQ(ierr);<br>
in order to impose a dirichlet condition
for the faces labeled by the correct value
(west=1, south=3,...).<br>
<br>
However, the function "uIn()" is called in
all the Elements containing the boundary
faces, and thus impose the values at nodes
that are not in the labeled faces.<br>
Is it a normal behavior ? I then have to
test the position of the node calling uIn,
in order to impose the good value.<br>
I have this problem for a Poiseuille flow,
where at 2 corner Elements i have a zero
velocity dirichlet condition (wall) and a
In flow velocity one.<br>
</blockquote>
<div><br>
</div>
<div>I believe I have fixed this in
knepley/fix-plex-bc-multiple which should
be merged soon. Do you know how to merge
that branch and try?</div>
<div><br>
</div>
<div> Thanks,</div>
<div><br>
</div>
<div> Matt</div>
<div> </div>
<blockquote class="gmail_quote"
style="margin:0 0 0 .8ex;border-left:1px
#ccc solid;padding-left:1ex"> The pressure
is then very high at the corner nodes of
those 2 Elements.<br>
Do you think my pressure problem comes
from there ? (The velocity field is
correct)<br>
<br>
Many thanks,<br>
<br>
Regards,<br>
<br>
Yann<br>
<br>
PS : i'm using those runtime options :<br>
-vel_petscspace_order 2
-pres_petscspace_order 1 \<br>
-ksp_type fgmres -pc_type fieldsplit
-pc_fieldsplit_type schur
-pc_fieldsplit_schur_fact_type full \<br>
-fieldsplit_velocity_pc_type lu
-fieldsplit_pressure_ksp_rtol 1.0e-10
-fieldsplit_pressure_pc_type jacobi<br>
<br>
<br>
---<br>
L'absence de virus dans ce courrier
électronique a été vérifiée par le
logiciel antivirus Avast.<br>
<a href="https://www.avast.com/antivirus"
rel="noreferrer" target="_blank"
moz-do-not-send="true">https://www.avast.com/antiviru<wbr>s</a><br>
<br>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div
class="m_2693683614766768657gmail_signature"
data-smartmail="gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>What most experimenters take for
granted before they begin their
experiments is infinitely more
interesting than any results to
which their experiments lead.<br>
-- Norbert Wiener</div>
<div><br>
</div>
<div><a
href="http://www.caam.rice.edu/%7Emk51/"
target="_blank"
moz-do-not-send="true">https://www.cse.buffalo.edu/~<wbr>knepley/</a><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
<p><br>
</p>
</div>
</div>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div class="gmail_signature" data-smartmail="gmail_signature">
<div dir="ltr">
<div>
<div dir="ltr">
<div>What most experimenters take for granted before
they begin their experiments is infinitely more
interesting than any results to which their
experiments lead.<br>
-- Norbert Wiener</div>
<div><br>
</div>
<div><a href="http://www.caam.rice.edu/%7Emk51/"
target="_blank" moz-do-not-send="true">https://www.cse.buffalo.edu/~knepley/</a><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
<p><br>
</p>
</body>
</html>