Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Tue Oct 3 16:04:38 2017 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions COPTFLAGS="-g -O" CXXOPTFLAGS="-g -O" --with-fc=0 --download-mpich=1 --download-metis=1 --download-parmetis=1 --download-c2html=1 --download-p4est=1 --download-superlu_dist --download-superlu --download-triangle=1 --download-hdf5=1 --with-x=0 --with-debugging=0 PETSC_ARCH=arch-linux-gnu-O --download-chaco --with-viewfromoptions=1 --with-clanguage=C Working directory: /u/dbrennan/Codes/petsc Machine platform: ('Linux', 'sunfire06.pppl.gov', '2.6.32-696.1.1.el6.x86_64', '#1 SMP Tue Apr 11 17:13:24 UTC 2017', 'x86_64', 'x86_64') Python version: 2.7.2 |EPD_free 7.2-2 (64-bit)| (default, Jul 3 2011, 15:17:51) [GCC 4.1.2 20080704 (Red Hat 4.1.2-44)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/u/dbrennan/Codes/petsc/config/BuildSystem/config/framework.py:841) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:841) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /p/fenics/fenics/local/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gdb...not found Checking for program /p/fenics/fenics/local/bin/gdb...not found Checking for program /usr/pppl/cmake/3.6.2/bin/gdb...not found Checking for program /usr/pppl/swig/3.0.5/bin/gdb...not found Checking for program /usr/pppl/git/1.8.0.2/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gdb...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gdb...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/gdb...not found Checking for program /usr/pppl/gcc/4.8.1/bin/gdb...not found Checking for program /usr/pppl/bison/2.7/bin/gdb...not found Checking for program /usr/pppl/python/2.7.2/bin/gdb...not found Checking for program /usr/pppl/subversion/1.8.11/bin/gdb...not found Checking for program /usr/lib64/qt-3.3/bin/gdb...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/gdb...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/gdb...not found Checking for program /usr/pppl/slurm/15.08.8/bin/gdb...not found Checking for program /usr/pppl/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /p/fenics/fenics/local/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/dbx...not found Checking for program /p/fenics/fenics/local/bin/dbx...not found Checking for program /usr/pppl/cmake/3.6.2/bin/dbx...not found Checking for program /usr/pppl/swig/3.0.5/bin/dbx...not found Checking for program /usr/pppl/git/1.8.0.2/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/dbx...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/dbx...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/dbx...not found Checking for program /usr/pppl/gcc/4.8.1/bin/dbx...not found Checking for program /usr/pppl/bison/2.7/bin/dbx...not found Checking for program /usr/pppl/python/2.7.2/bin/dbx...not found Checking for program /usr/pppl/subversion/1.8.11/bin/dbx...not found Checking for program /usr/lib64/qt-3.3/bin/dbx...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/dbx...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/dbx...not found Checking for program /usr/pppl/slurm/15.08.8/bin/dbx...not found Checking for program /usr/pppl/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program ./dbx...not found Checking for program /u/dbrennan/bin/dbx...not found Checking for program ./dbx...not found Checking for program /u/dbrennan/dbx...not found Checking for program /p/fenics/fenics/local/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/xdb...not found Checking for program /p/fenics/fenics/local/bin/xdb...not found Checking for program /usr/pppl/cmake/3.6.2/bin/xdb...not found Checking for program /usr/pppl/swig/3.0.5/bin/xdb...not found Checking for program /usr/pppl/git/1.8.0.2/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/xdb...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/xdb...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/xdb...not found Checking for program /usr/pppl/gcc/4.8.1/bin/xdb...not found Checking for program /usr/pppl/bison/2.7/bin/xdb...not found Checking for program /usr/pppl/python/2.7.2/bin/xdb...not found Checking for program /usr/pppl/subversion/1.8.11/bin/xdb...not found Checking for program /usr/lib64/qt-3.3/bin/xdb...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/xdb...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/xdb...not found Checking for program /usr/pppl/slurm/15.08.8/bin/xdb...not found Checking for program /usr/pppl/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program ./xdb...not found Checking for program /u/dbrennan/bin/xdb...not found Checking for program ./xdb...not found Checking for program /u/dbrennan/xdb...not found Checking for program /p/fenics/fenics/local/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/dsymutil...not found Checking for program /p/fenics/fenics/local/bin/dsymutil...not found Checking for program /usr/pppl/cmake/3.6.2/bin/dsymutil...not found Checking for program /usr/pppl/swig/3.0.5/bin/dsymutil...not found Checking for program /usr/pppl/git/1.8.0.2/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/dsymutil...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/dsymutil...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/dsymutil...not found Checking for program /usr/pppl/gcc/4.8.1/bin/dsymutil...not found Checking for program /usr/pppl/bison/2.7/bin/dsymutil...not found Checking for program /usr/pppl/python/2.7.2/bin/dsymutil...not found Checking for program /usr/pppl/subversion/1.8.11/bin/dsymutil...not found Checking for program /usr/lib64/qt-3.3/bin/dsymutil...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/dsymutil...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/dsymutil...not found Checking for program /usr/pppl/slurm/15.08.8/bin/dsymutil...not found Checking for program /usr/pppl/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program ./dsymutil...not found Checking for program /u/dbrennan/bin/dsymutil...not found Checking for program ./dsymutil...not found Checking for program /u/dbrennan/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/u/dbrennan/Codes/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /p/fenics/fenics/local/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/git...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/git...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/git...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/git...not found Checking for program /p/fenics/fenics/local/bin/git...not found Checking for program /usr/pppl/cmake/3.6.2/bin/git...not found Checking for program /usr/pppl/swig/3.0.5/bin/git...not found Checking for program /usr/pppl/git/1.8.0.2/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.0.2 ================================================================================ TEST configureMercurial from config.sourceControl(/u/dbrennan/Codes/petsc/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /p/fenics/fenics/local/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/hg...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/hg...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/hg...not found Checking for program /p/fenics/fenics/local/bin/hg...not found Checking for program /usr/pppl/cmake/3.6.2/bin/hg...not found Checking for program /usr/pppl/swig/3.0.5/bin/hg...not found Checking for program /usr/pppl/git/1.8.0.2/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/hg...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/hg...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/hg...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/hg...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/hg...not found Checking for program /usr/pppl/gcc/4.8.1/bin/hg...not found Checking for program /usr/pppl/bison/2.7/bin/hg...not found Checking for program /usr/pppl/python/2.7.2/bin/hg...not found Checking for program /usr/pppl/subversion/1.8.11/bin/hg...not found Checking for program /usr/lib64/qt-3.3/bin/hg...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/hg...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/hg...not found Checking for program /usr/pppl/slurm/15.08.8/bin/hg...not found Checking for program /usr/pppl/bin/hg...not found Checking for program /bin/hg...not found Checking for program /usr/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 1.4) ================================================================================ TEST configureCLanguage from PETSc.options.languages(/u/dbrennan/Codes/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/u/dbrennan/Codes/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 8 #define PETSC_VERSION_SUBMINOR 0 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_EQ(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_ PETSC_VERSION_EQ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/u/dbrennan/Codes/petsc" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/u/dbrennan/Codes/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/u/dbrennan/Codes/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) bin/maint exists. This appears to be a repository clone .git directory exists Executing: cd /u/dbrennan/Codes/petsc && git describe --match "v*" stdout: v3.8-38-g4f3f43d Executing: cd /u/dbrennan/Codes/petsc && git log -1 --pretty=format:%H stdout: 4f3f43d337ebdf18544bc1cca4e1b210c841706e Executing: cd /u/dbrennan/Codes/petsc && git log -1 --pretty=format:%ci stdout: 2017-10-03 14:12:35 -0500 Executing: cd /u/dbrennan/Codes/petsc && git branch stdout: knepley/feature-plex-box-mesh * master Defined "VERSION_GIT" to ""v3.8-38-g4f3f43d"" Defined "VERSION_DATE_GIT" to ""2017-10-03 14:12:35 -0500"" Defined "VERSION_BRANCH_GIT" to ""master"" ================================================================================ TEST configureArchitecture from PETSc.options.arch(/u/dbrennan/Codes/petsc/config/PETSc/options/arch.py:36) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:36) Checks PETSC_ARCH and sets if not set =============================================================================== Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-linux-gnu-O, ignoring environment: arch-linux-gnu-g =============================================================================== Defined "ARCH" to ""arch-linux-gnu-O"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/u/dbrennan/Codes/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/u/dbrennan/Codes/petsc/config/PETSc/options/installDir.py:75) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:75) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/u/dbrennan/Codes/petsc/config/PETSc/options/installDir.py:68) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:68) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/u/dbrennan/Codes/petsc/config/PETSc/options/installDir.py:52) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:52) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/u/dbrennan/Codes/petsc/config/PETSc/options/installDir.py:88) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:88) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/u/dbrennan/Codes/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/u/dbrennan/Codes/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1612) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1612) **** printenv **** LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45: GROUP=users SLURM_DIR=/usr/pppl/slurm/15.08.8 REMOTEHOST=dbrennan-lt1.pppl.gov LAPACKHOME=/usr/pppl/gcc/4.6-pkgs/lapack-3.3.1 HOSTTYPE=x86_64-linux LESSOPEN=||/usr/bin/lesspipe.sh %s SSH_CLIENT=198.125.228.26 57880 22 CVS_RSH=ssh LOGNAME=dbrennan USER=dbrennan HOME=/u/dbrennan PATH=/p/fenics/fenics/local/bin:/p/nimrod/dbrennan/nimall/nimdevel/scripts:/p/nimrod/dbrennan/nimall-build/nimdevel/bin:/p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin:/p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin:/p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin:/p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin:/p/nimrod/dbrennan/nimall-tarball/python/bin:/p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux:/p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin:/p/nimrod/dbrennan/nimall-tarball/bin:/p/nimrod/dbrennan/nimall/xdraw:/p/fenics/fenics/local/bin:/usr/pppl/cmake/3.6.2/bin:/usr/pppl/swig/3.0.5/bin:/usr/pppl/git/1.8.0.2/bin:/p/nimrod/dbrennan/nimall/nimdevel/scripts:/p/nimrod/dbrennan/nimall-build/nimdevel/bin:/p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin:/p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin:/p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin:/p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin:/p/nimrod/dbrennan/nimall-tarball/python/bin:/p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux:/p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin:/p/nimrod/dbrennan/nimall-tarball/bin:/p/nimrod/dbrennan/nimall/xdraw:/usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin:/usr/pppl/gcc/4.8.1/bin:/usr/pppl/bison/2.7/bin:/usr/pppl/python/2.7.2/bin:/usr/pppl/subversion/1.8.11/bin:/usr/lib64/qt-3.3/bin:/usr/pppl/ppplcluster/1.2/bin:/usr/pppl/ppplcluster/1.2/sbin:/usr/pppl/slurm/15.08.8/bin:/usr/pppl/bin:/bin:/usr/bin:.:/u/dbrennan/bin:. NIMSFX= DISPLAY=sunfire06.pppl.gov:47.0 LOADEDMODULES=slurm/15.08.8:ppplcluster/1.2:subversion/1.8.11:python/2.7.2:bison/2.7:gcc4/4.8.1:openmpi/1.4.3:lapack-blas/3.3.1:git/1.8.0.2:swig/3.0.5:cmake/3.6.2 SLURMHOME=/usr/pppl/slurm/15.08.8 TERM=xterm-256color SHELL=/bin/tcsh NIMALL=/p/nimrod/dbrennan/nimall INFOPATH=/usr/pppl/gcc/4.8.1/share/info MPIHOME=/usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3 SHLVL=1 LD_RUN_PATH=/usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/lib:/usr/pppl/gcc/4.8.1/lib64:/usr/pppl/slurm/15.08.8/lib G_BROKEN_FILENAMES=1 PETSC_ARCH=arch-linux-gnu-O LD_LIBRARY_PATH=/usr/pppl/gcc/4.6-pkgs/lapack-3.3.1:/usr/pppl/gcc/4.6-pkgs/libf2c/lib:/p/fenics/fenics/local/lib:/usr/pppl/gcc/4.6-pkgs/lapack-3.3.1:/usr/pppl/gcc/4.6-pkgs/libf2c/lib:/p/fenics/fenics/local/lib:/usr/pppl/gcc/4.6-pkgs/lapack-3.3.1:/usr/pppl/gcc/4.6-pkgs/libf2c/lib:/usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/lib/openmpi:/usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/lib:/usr/pppl/gcc/4.8.1/lib64:/usr/pppl/mpc/0.9/lib:/usr/pppl/mpfr/3.0.1/lib:/usr/pppl/gmp/5.0.2/lib:/usr/lib64:/usr/pppl/python/2.7.2/lib:/usr/pppl/slurm/15.08.8/lib CXX=g++4 F90=gfortran4 PETSC_DIR=/u/dbrennan/Codes/petsc DRAWDIR=/p/nimrod/dbrennan/nimall/nimdevel/draw MANPATH=/p/fenics/fenics/local/share/man:/p/fenics/fenics/local/share/man:/usr/pppl/swig/3.0.5/share/man:/usr/pppl/git/1.8.0.2/share/doc/git-doc:/usr/pppl/git/1.8.0.2/share/man:/usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/share/man:/usr/pppl/gcc/4.8.1/share/man:/usr/pppl/bison/2.7/share/man:/usr/pppl/python/2.7.2/man:/usr/pppl/subversion/1.8.11/man:/usr/pppl/ppplcluster/1.2/man:/usr/pppl/slurm/15.08.8/share/man:/usr/pppl/Modules/3.2.9/share/man:/usr/share/man:/usr/pppl/man _LMFILES_=/usr/pppl/Modules/modulefiles/slurm/15.08.8:/usr/pppl/Modules/modulefiles/ppplcluster/1.2:/usr/pppl/Modules/modulefiles/subversion/1.8.11:/usr/pppl/Modules/modulefiles/python/2.7.2:/usr/pppl/Modules/modulefiles/bison/2.7:/usr/pppl/Modules/modulefiles/gcc4/4.8.1:/usr/pppl/Modules/compiler/gcc4/4.6.3/openmpi/1.4.3:/usr/pppl/Modules/compiler/gcc4/4.6.3/lapack-blas/3.3.1:/usr/pppl/Modules/modulefiles/git/1.8.0.2:/usr/pppl/Modules/modulefiles/swig/3.0.5:/usr/pppl/Modules/modulefiles/cmake/3.6.2 OSTYPE=linux GCC4_HOME=/usr/pppl/gcc/4.8.1 SVN_EDITOR=vi MODULESHOME=/usr/pppl/Modules/3.2.9 VENDOR=unknown QTLIB=/usr/lib64/qt-3.3/lib CC=gcc4 PYTHONPATH=/p/fenics/fenics/local/lib/python2.7/site-packages:/p/nimrod/dbrennan/nimall-tarball/lib/python2.7/site-packages:/p/fenics/fenics/local/lib/python2.7/site-packages:/p/nimrod/dbrennan/nimall-tarball/lib/python2.7/site-packages:/p/nimrod/dbrennan/nimall/nimdevel/scripts:/p/nimrod/dbrennan/nimall/nimdevel/scripts MODULE_VERSION_STACK=3.2.9 INCLUDE_PATH=/usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/include:/usr/pppl/gcc/4.8.1/include:/usr/pppl/python/2.7.2/include:/usr/pppl/slurm/15.08.8/include CONTRIB=/p/nimrod/dbrennan/nimall-tarball PPPLCLUSTER_HOME=/usr/pppl/ppplcluster/1.2 KRB5CCNAME=FILE:/tmp/krb5cc_40840_XFSQX2 HOST=sunfire06 NIMSOFT=/p/nimrod/dbrennan/nimall-build PKG_CONFIG_PATH=/p/fenics/fenics/local/lib/pkgconfig:/usr/lib64/pkgconfig F77=gfortran4 MODULEPATH=/usr/pppl/Modules/modulefiles:/usr/pppl/Modules/compi(¥H:/usr/pppl/Modules/compiler/gcc4/4.8.1 KDEDIRS=/usr SSH_CONNECTION=198.125.228.26 57880 192.55.106.72 22 PPPL_CSH_INIT=1 MODULE_VERSION=3.2.9 SSH_TTY=/dev/pts/42 HOSTNAME=sunfire06.pppl.gov BLASHOME=/usr/pppl/gcc/4.6-pkgs/lapack-3.3.1 NIMSRC=/p/nimrod/dbrennan/nimall/nimdevel QTINC=/usr/lib64/qt-3.3/include PWD=/u/dbrennan/Codes/petsc FC=gfortran4 MAIL=/var/spool/mail/dbrennan MACHTYPE=x86_64 QTDIR=/usr/lib64/qt-3.3 C_INCLUDE_PATH=/usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/include:/usr/pppl/gcc/4.8.1/include:/usr/pppl/slurm/15.08.8/include ================================================================================ TEST resetEnvCompilers from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1619) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1619) =============================================================================== ***** WARNING: CC (set to gcc4) found in environment variables - ignoring use ./configure CC=$CC if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: CXX (set to g++4) found in environment variables - ignoring use ./configure CXX=$CXX if you really want to use that value ****** =============================================================================== FC (set to gfortran4) found in environment variables - ignoring since also set on command line =============================================================================== ***** WARNING: F77 (set to gfortran4) found in environment variables - ignoring use ./configure F77=$F77 if you really want to use that value ****** =============================================================================== =============================================================================== ***** WARNING: F90 (set to gfortran4) found in environment variables - ignoring use ./configure F90=$F90 if you really want to use that value ****** =============================================================================== ================================================================================ TEST checkEnvCompilers from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1649) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1649) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1584) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1584) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1603) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1603) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:426) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:426) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:436) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:436) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:566) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:566) Locate a functional C compiler Checking for program /p/fenics/fenics/local/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gcc...not found Checking for program /p/fenics/fenics/local/bin/gcc...not found Checking for program /usr/pppl/cmake/3.6.2/bin/gcc...not found Checking for program /usr/pppl/swig/3.0.5/bin/gcc...not found Checking for program /usr/pppl/git/1.8.0.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gcc...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/gcc...not found Checking for program /usr/pppl/gcc/4.8.1/bin/gcc...found Defined make macro "CC" to "gcc" Pushing language C All intermediate test results are stored in /tmp/petsc-M4swUz All intermediate test results are stored in /tmp/petsc-M4swUz/config.setCompilers Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest /tmp/petsc-M4swUz/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest /tmp/petsc-M4swUz/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest /tmp/petsc-M4swUz/config.setCompilers/conftest.o Testing executable /tmp/petsc-M4swUz/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.setCompilers/conftest Executing: /tmp/petsc-M4swUz/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:599) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:599) Locate a functional C preprocessor Checking for program /p/fenics/fenics/local/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gcc...not found Checking for program /p/fenics/fenics/local/bin/gcc...not found Checking for program /usr/pppl/cmake/3.6.2/bin/gcc...not found Checking for program /usr/pppl/swig/3.0.5/bin/gcc...not found Checking for program /usr/pppl/git/1.8.0.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gcc...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/gcc...not found Checking for program /usr/pppl/gcc/4.8.1/bin/gcc...found Defined make macro "CPP" to "gcc -E" Pushing language C Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.setCompilers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.setCompilers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.setCompilers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.setCompilers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 182 "/usr/include/stdlib.h" 3 4 extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 # 565 "/usr/include/stdlib.h" 3 4 extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:640) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:640) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:680) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:680) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:792) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:792) Locate a functional Cxx compiler Checking for program /p/fenics/fenics/local/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/g++...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/g++...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/g++...not found Checking for program /p/fenics/fenics/local/bin/g++...not found Checking for program /usr/pppl/cmake/3.6.2/bin/g++...not found Checking for program /usr/pppl/swig/3.0.5/bin/g++...not found Checking for program /usr/pppl/git/1.8.0.2/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/g++...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/g++...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/g++...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/g++...not found Checking for program /usr/pppl/gcc/4.8.1/bin/g++...found Defined make macro "CXX" to "g++" Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-M4swUz/config.setCompilers/conftest /tmp/petsc-M4swUz/config.setCompilers/conftest.o Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-M4swUz/config.setCompilers/conftest /tmp/petsc-M4swUz/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-M4swUz/config.setCompilers/conftest /tmp/petsc-M4swUz/config.setCompilers/conftest.o Testing executable /tmp/petsc-M4swUz/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.setCompilers/conftest Executing: /tmp/petsc-M4swUz/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:830) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:830) Locate a functional Cxx preprocessor Checking for program /p/fenics/fenics/local/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/g++...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/g++...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/g++...not found Checking for program /p/fenics/fenics/local/bin/g++...not found Checking for program /usr/pppl/cmake/3.6.2/bin/g++...not found Checking for program /usr/pppl/swig/3.0.5/bin/g++...not found Checking for program /usr/pppl/git/1.8.0.2/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/g++...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/g++...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/g++...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/g++...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/g++...not found Checking for program /usr/pppl/gcc/4.8.1/bin/g++...found Defined make macro "CXXCPP" to "g++ -E" Pushing language Cxx Executing: g++ -E -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.cc stdout: # 1 "/tmp/petsc-M4swUz/config.setCompilers/conftest.cc" # 1 "" # 1 "/tmp/petsc-M4swUz/config.setCompilers/conftest.cc" # 1 "/tmp/petsc-M4swUz/config.setCompilers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.setCompilers/conftest.cc" 2 # 1 "/tmp/petsc-M4swUz/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/tmp/petsc-M4swUz/config.setCompilers/conftest.cc" 2 # 1 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 1 3 # 39 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 3 # 40 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 3 # 1 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++config.h" 1 3 # 178 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 420 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++config.h" 3 # 1 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/os_defines.h" 1 3 # 39 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/os_defines.h" 3 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 40 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/os_defines.h" 2 3 # 421 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++config.h" 2 3 # 1 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/cpu_defines.h" 1 3 # 424 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++config.h" 2 3 # 42 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 2 3 # 72 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 33 "/usr/include/stdlib.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/stdlib.h" 2 3 4 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 43 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 236 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/xlocale.h" 1 3 4 # 28 "/usr/include/xlocale.h" 3 4 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 4 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 220 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 # 55 "/usr/include/sys/select.h" 3 4 typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 extern "C" { # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) throw (); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) throw (); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw (); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) throw () { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) throw () { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 263 "/usr/include/sys/types.h" 3 4 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 } # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 4 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 4 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; # 674 "/usr/include/stdlib.h" 3 4 extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 4 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 694 "/usr/include/stdlib.h" 3 4 extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 4 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; # 896 "/usr/include/stdlib.h" 3 4 extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); # 921 "/usr/include/stdlib.h" 3 4 extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 } # 73 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 2 3 # 114 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } } # 196 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 228 "/usr/pppl/gcc/4.8.1/include/c++/4.8.1/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/tmp/petsc-M4swUz/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:947) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:947) Locate a functional Fortran compiler ================================================================================ TEST checkLargeFileIO from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1085) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1085) ================================================================================ TEST checkArchiver from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1184) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1184) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.47.el6_9.1 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.47.el6_9.1 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /p/fenics/fenics/local/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/ar...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/ar...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/ar...not found Checking for program /p/fenics/fenics/local/bin/ar...not found Checking for program /usr/pppl/cmake/3.6.2/bin/ar...not found Checking for program /usr/pppl/swig/3.0.5/bin/ar...not found Checking for program /usr/pppl/git/1.8.0.2/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/ar...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/ar...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/ar...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/ar...not found Checking for program /usr/pppl/gcc/4.8.1/bin/ar...not found Checking for program /usr/pppl/bison/2.7/bin/ar...not found Checking for program /usr/pppl/python/2.7.2/bin/ar...not found Checking for program /usr/pppl/subversion/1.8.11/bin/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/ar...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/ar...not found Checking for program /usr/pppl/slurm/15.08.8/bin/ar...not found Checking for program /usr/pppl/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /p/fenics/fenics/local/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/ranlib...not found Checking for program /p/fenics/fenics/local/bin/ranlib...not found Checking for program /usr/pppl/cmake/3.6.2/bin/ranlib...not found Checking for program /usr/pppl/swig/3.0.5/bin/ranlib...not found Checking for program /usr/pppl/git/1.8.0.2/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/ranlib...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/ranlib...not found Checking for program /usr/pppl/gcc/4.8.1/bin/ranlib...not found Checking for program /usr/pppl/bison/2.7/bin/ranlib...not found Checking for program /usr/pppl/python/2.7.2/bin/ranlib...not found Checking for program /usr/pppl/subversion/1.8.11/bin/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/ranlib...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/ranlib...not found Checking for program /usr/pppl/slurm/15.08.8/bin/ranlib...not found Checking for program /usr/pppl/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /tmp/petsc-M4swUz/config.setCompilers/libconf1.a /tmp/petsc-M4swUz/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /tmp/petsc-M4swUz/config.setCompilers/libconf1.a Possible ERROR while running ranlib: exit code 256 stderr: /usr/bin/ranlib: '-c': No such file Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.47.el6_9.1 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.47.el6_9.1 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /p/fenics/fenics/local/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/ar...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/ar...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/ar...not found Checking for program /p/fenics/fenics/local/bin/ar...not found Checking for program /usr/pppl/cmake/3.6.2/bin/ar...not found Checking for program /usr/pppl/swig/3.0.5/bin/ar...not found Checking for program /usr/pppl/git/1.8.0.2/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/ar...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/ar...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/ar...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/ar...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/ar...not found Checking for program /usr/pppl/gcc/4.8.1/bin/ar...not found Checking for program /usr/pppl/bison/2.7/bin/ar...not found Checking for program /usr/pppl/python/2.7.2/bin/ar...not found Checking for program /usr/pppl/subversion/1.8.11/bin/ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/ar...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/ar...not found Checking for program /usr/pppl/slurm/15.08.8/bin/ar...not found Checking for program /usr/pppl/bin/ar...not found Checking for program /bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /p/fenics/fenics/local/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/ranlib...not found Checking for program /p/fenics/fenics/local/bin/ranlib...not found Checking for program /usr/pppl/cmake/3.6.2/bin/ranlib...not found Checking for program /usr/pppl/swig/3.0.5/bin/ranlib...not found Checking for program /usr/pppl/git/1.8.0.2/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/ranlib...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/ranlib...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/ranlib...not found Checking for program /usr/pppl/gcc/4.8.1/bin/ranlib...not found Checking for program /usr/pppl/bison/2.7/bin/ranlib...not found Checking for program /usr/pppl/python/2.7.2/bin/ranlib...not found Checking for program /usr/pppl/subversion/1.8.11/bin/ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/ranlib...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/ranlib...not found Checking for program /usr/pppl/slurm/15.08.8/bin/ranlib...not found Checking for program /usr/pppl/bin/ranlib...not found Checking for program /bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /tmp/petsc-M4swUz/config.setCompilers/libconf1.a /tmp/petsc-M4swUz/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /tmp/petsc-M4swUz/config.setCompilers/libconf1.a Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest /tmp/petsc-M4swUz/config.setCompilers/conftest.o -L/tmp/petsc-M4swUz/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1298) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1298) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker gcc using flags ['-shared'] Checking for program /p/fenics/fenics/local/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gcc...not found Checking for program /p/fenics/fenics/local/bin/gcc...not found Checking for program /usr/pppl/cmake/3.6.2/bin/gcc...not found Checking for program /usr/pppl/swig/3.0.5/bin/gcc...not found Checking for program /usr/pppl/git/1.8.0.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gcc...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/gcc...not found Checking for program /usr/pppl/gcc/4.8.1/bin/gcc...found Defined make macro "LD_SHARED" to "gcc" Trying C compiler flag Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -shared /tmp/petsc-M4swUz/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /tmp/petsc-M4swUz/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.text' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o: could not read symbols: Bad value collect2: error: ld returned 1 exit status Rejecting linker flag -shared due to nonzero status from link Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/libconftest.so /tmp/petsc-M4swUz/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/lib/../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' collect2: error: ld returned 1 exit status Rejected C compiler flag because it was not compatible with shared linker gcc using flags ['-shared'] Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -shared -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if (ret) {} ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o -L/tmp/petsc-M4swUz/config.setCompilers -lconftest Using shared linker gcc with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1044) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1044) Determine the PIC option for each compiler Pushing language C Trying C compiler flag Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o Accepted C compiler flag Popping language C Pushing language Cxx Trying Cxx compiler flag Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Pushing language C Pushing language C Popping language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: /tmp/petsc-M4swUz/config.setCompilers/conftest.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o: could not read symbols: Bad value collect2: error: ld returned 1 exit status Rejected Cxx compiler flag because shared linker cannot handle it Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int (*fprintf_ptr)(FILE*,const char*,...) = fprintf; void foo(void){ fprintf_ptr(stdout,"hello"); return; } void bar(void){foo();} Pushing language C Pushing language C Popping language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o Accepted Cxx compiler flag -fPIC Popping language Cxx ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1392) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1392) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: gcc -V Trying C linker flag -Wl,-rpath, Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -Wl,-rpath,/u/dbrennan/Codes/petsc -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/u/dbrennan/Codes/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: gcc -V Trying Cxx linker flag -Wl,-rpath, Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-M4swUz/config.setCompilers/conftest -Wl,-rpath,/u/dbrennan/Codes/petsc /tmp/petsc-M4swUz/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/u/dbrennan/Codes/petsc Popping language Cxx ================================================================================ TEST checkLibC from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1427) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1427) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1476) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1476) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /tmp/petsc-M4swUz/config.headers Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /tmp/petsc-M4swUz/config.libraries Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC /tmp/petsc-M4swUz/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker gcc using flags ['-shared'] Checking for program /p/fenics/fenics/local/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gcc...not found Checking for program /p/fenics/fenics/local/bin/gcc...not found Checking for program /usr/pppl/cmake/3.6.2/bin/gcc...not found Checking for program /usr/pppl/swig/3.0.5/bin/gcc...not found Checking for program /usr/pppl/git/1.8.0.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gcc...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gcc...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/gcc...not found Checking for program /usr/pppl/gcc/4.8.1/bin/gcc...found Defined make macro "DYNAMICLINKER" to "gcc" Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -shared -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/libconftest.so -shared -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o -ldl Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.setCompilers/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function 'printf' [enabled by default] printf("Could not load symbol\n"); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function 'printf' [enabled by default] printf("Invalid return from foo()\n"); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function 'printf' [enabled by default] printf("Could not close library\n"); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/tmp/petsc-M4swUz/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.o -ldl Using dynamic linker gcc with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/setCompilers.py:1528) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1528) Output module data as defines and substitutions Substituting "CC" with "gcc" Substituting "CFLAGS" with " -fPIC " Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "gcc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "g++" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "g++ -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "" Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/u/dbrennan/Codes/petsc/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/u/dbrennan/Codes/petsc/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/u/dbrennan/Codes/petsc/config/PETSc/options/sharedLibraries.py:99) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:99) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/u/dbrennan/Codes/petsc/config/PETSc/options/sharedLibraries.py:105) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:105) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/u/dbrennan/Codes/petsc/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined make macro "PETSC_INDEX_SIZE" to "32" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Trying C compiler flag -Wall Trying C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Trying C compiler flag -fstack-protector Trying C compiler flag -mfp16-format=ieee Rejected C compiler flag -mfp16-format=ieee Trying C compiler flag -fvisibility=hidden Trying C compiler flag -g -O Trying Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Trying Cxx compiler flag -fstack-protector Trying Cxx compiler flag -fvisibility=hidden Trying Cxx compiler flag -g -O Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fstack-protector Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -mfp16-format=ieee /tmp/petsc-M4swUz/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: gcc: error: unrecognized command line option '-mfp16-format=ieee' Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Rejecting compiler flag -mfp16-format=ieee due to nonzero status from link Rejecting compiler flag -mfp16-format=ieee due to gcc: error: unrecognized command line option '-mfp16-format=ieee' PETSc Error: No output file produced Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fvisibility=hidden Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g -O Popping language C Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -Wall -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fstack-protector Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fvisibility=hidden Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g -O Popping language Cxx Executing: gcc --version stdout: gcc (GCC) 4.8.1 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: gcc gcc (GCC) 4.8.1 Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: gcc --help stdout: Usage: gcc [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: g++ --version stdout: g++ (GCC) 4.8.1 Copyright (C) 2013 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: g++ g++ (GCC) 4.8.1 Executing: g++ --help stdout: Usage: g++ [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . ================================================================================ TEST configureDebugging from PETSc.options.debugging(/u/dbrennan/Codes/petsc/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== ================================================================================ TEST checkRestrict from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: gcc -V Pushing language C All intermediate test results are stored in /tmp/petsc-M4swUz/config.compilers Executing: gcc -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.compilers/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.compilers/conftest.c:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set C restrict keyword to __restrict Defined "C_RESTRICT" to "__restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:322) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:322) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:333) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:333) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: gcc -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.compilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:171) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:171) Determines the libraries needed to link with C Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.compilers/conftest -v -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ./configure --prefix=/usr/pppl/gcc/4.8.1 --with-gmp=/usr/pppl/gmp/5.0.2 --with-mpfr=/usr/pppl/mpfr/3.0.1 --with-mpc=/usr/pppl/mpc/0.9 Thread model: posix gcc version 4.8.1 (GCC) COMPILER_PATH=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/ LIBRARY_PATH=/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-M4swUz/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fstack-protector' '-fvisibility=hidden' '-g' '-O' '-mtune=generic' '-march=x86-64' /usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-M4swUz/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtbegin.o -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../.. /tmp/petsc-M4swUz/config.compilers/conftest.o -ldl -lgcc --as-needed -lgcc_s --no-as-needed -lc -lgcc --as-needed -lgcc_s --no-as-needed /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtend.o /usr/lib/../lib64/crtn.o Popping language C compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=gcc compilers: Unknown arg COLLECT_GCC=gcc compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-unknown-linux-gnu compilers: Unknown arg x86_64-unknown-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ./configure compilers: Unknown arg ./configure compilers: Checking arg --prefix=/usr/pppl/gcc/4.8.1 compilers: Unknown arg --prefix=/usr/pppl/gcc/4.8.1 compilers: Checking arg --with-gmp=/usr/pppl/gmp/5.0.2 compilers: Unknown arg --with-gmp=/usr/pppl/gmp/5.0.2 compilers: Checking arg --with-mpfr=/usr/pppl/mpfr/3.0.1 compilers: Unknown arg --with-mpfr=/usr/pppl/mpfr/3.0.1 compilers: Checking arg --with-mpc=/usr/pppl/mpc/0.9 compilers: Unknown arg --with-mpc=/usr/pppl/mpc/0.9 compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.1 compilers: Unknown arg 4.8.1 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/collect2 compilers: Unknown arg /usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-M4swUz/config.compilers/conftest compilers: Unknown arg /tmp/petsc-M4swUz/config.compilers/conftest compilers: Checking arg /usr/lib/../lib64/crt1.o compilers: Unknown arg /usr/lib/../lib64/crt1.o compilers: Checking arg /usr/lib/../lib64/crti.o compilers: Unknown arg /usr/lib/../lib64/crti.o compilers: Checking arg /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtbegin.o compilers: Unknown arg /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtbegin.o compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 compilers: Found library directory: -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64 compilers: Found library directory: -L/usr/pppl/gcc/4.8.1/lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../.. compilers: Found library directory: -L/usr/pppl/gcc/4.8.1/lib compilers: Checking arg /tmp/petsc-M4swUz/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-M4swUz/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Found library : -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lgcc_s compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtend.o compilers: Unknown arg /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtend.o compilers: Checking arg /usr/lib/../lib64/crtn.o compilers: Unknown arg /usr/lib/../lib64/crtn.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1', '-L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1', '-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64', '-L/usr/pppl/gcc/4.8.1/lib64', '-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib', '-L/usr/pppl/gcc/4.8.1/lib', '-ldl', '-lgcc_s'] compilers: Check that C libraries can be used from Fortran ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:1389) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1389) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -MMD -MP /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC -MMD -MP /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx ================================================================================ TEST checkC99Flag from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:1435) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1435) Check for -std=c99 or equivalent flag Accepted C99 compile flag: -std=c99 Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.setCompilers/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.setCompilers/conftest.c:11:5: error: 'for' loop initial declarations are only allowed in C99 mode for (int i=0; i<2; i++){ ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.c:11:5: note: use option -std=c99 or -std=gnu99 to compile your code /tmp/petsc-M4swUz/config.setCompilers/conftest.c:7:11: warning: variable 'x' set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /tmp/petsc-M4swUz/config.setCompilers/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.setCompilers/conftest.c:11:5: error: 'for' loop initial declarations are only allowed in C99 mode for (int i=0; i<2; i++){ ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.c:11:5: note: use option -std=c99 or -std=gnu99 to compile your code /tmp/petsc-M4swUz/config.setCompilers/conftest.c:7:11: warning: variable 'x' set but not used [-Wunused-but-set-variable] float x[2],y; ^ PETSc Error: No output file produced Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -std=c99 /tmp/petsc-M4swUz/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.setCompilers/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.setCompilers/conftest.c:7:11: warning: variable 'x' set but not used [-Wunused-but-set-variable] float x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Popping language C ================================================================================ TEST checkRestrict from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: gcc -V Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.compilers/conftest.cc: In function 'int main()': /tmp/petsc-M4swUz/config.compilers/conftest.cc:5:20: warning: unused variable 'x' [-Wunused-variable] float * __restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict x;; return 0; } compilers: Set Cxx restrict keyword to __restrict Defined "CXX_RESTRICT" to "__restrict" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:373) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:373) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: g++ -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:346) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:346) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:431) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:431) Determines the libraries needed to link with C++ Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.compilers/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-M4swUz/config.compilers/conftest -v -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.compilers/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ./configure --prefix=/usr/pppl/gcc/4.8.1 --with-gmp=/usr/pppl/gmp/5.0.2 --with-mpfr=/usr/pppl/mpfr/3.0.1 --with-mpc=/usr/pppl/mpc/0.9 Thread model: posix gcc version 4.8.1 (GCC) COMPILER_PATH=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/ LIBRARY_PATH=/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-o' '/tmp/petsc-M4swUz/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-fstack-protector' '-fvisibility=hidden' '-g' '-O' '-L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1' '-L/usr/pppl/gcc/4.8.1/lib64' '-L/usr/pppl/gcc/4.8.1/lib' '-shared-libgcc' '-mtune=generic' '-march=x86-64' /usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/collect2 --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -o /tmp/petsc-M4swUz/config.compilers/conftest /usr/lib/../lib64/crt1.o /usr/lib/../lib64/crti.o /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtbegin.o -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../.. /tmp/petsc-M4swUz/config.compilers/conftest.o -rpath /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -rpath /usr/pppl/gcc/4.8.1/lib64 -rpath /usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtend.o /usr/lib/../lib64/crtn.o Popping language Cxx compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=g++ compilers: Unknown arg COLLECT_GCC=g++ compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-unknown-linux-gnu compilers: Unknown arg x86_64-unknown-linux-gnu compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ./configure compilers: Unknown arg ./configure compilers: Checking arg --prefix=/usr/pppl/gcc/4.8.1 compilers: Unknown arg --prefix=/usr/pppl/gcc/4.8.1 compilers: Checking arg --with-gmp=/usr/pppl/gmp/5.0.2 compilers: Unknown arg --with-gmp=/usr/pppl/gmp/5.0.2 compilers: Checking arg --with-mpfr=/usr/pppl/mpfr/3.0.1 compilers: Unknown arg --with-mpfr=/usr/pppl/mpfr/3.0.1 compilers: Checking arg --with-mpc=/usr/pppl/mpc/0.9 compilers: Unknown arg --with-mpc=/usr/pppl/mpc/0.9 compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.1 compilers: Unknown arg 4.8.1 compilers: Checking arg (GCC) compilers: Unknown arg (GCC) compilers: Checking arg COMPILER_PATH=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Unknown arg COMPILER_PATH=/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/ compilers: Checking arg LIBRARY_PATH=/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../:/lib/:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../:/lib/:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/collect2 compilers: Unknown arg /usr/pppl/gcc/4.8.1/libexec/gcc/x86_64-unknown-linux-gnu/4.8.1/collect2 compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /tmp/petsc-M4swUz/config.compilers/conftest compilers: Unknown arg /tmp/petsc-M4swUz/config.compilers/conftest compilers: Checking arg /usr/lib/../lib64/crt1.o compilers: Unknown arg /usr/lib/../lib64/crt1.o compilers: Checking arg /usr/lib/../lib64/crti.o compilers: Unknown arg /usr/lib/../lib64/crti.o compilers: Checking arg /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtbegin.o compilers: Unknown arg /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtbegin.o compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 compilers: Found library directory: -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib64 compilers: Found library directory: -L/usr/pppl/gcc/4.8.1/lib64 compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib compilers: Found library directory: -L/usr/pppl/gcc/4.8.1/lib compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../../../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/../../.. compilers: Checking arg /tmp/petsc-M4swUz/config.compilers/conftest.o compilers: Unknown arg /tmp/petsc-M4swUz/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/pppl/gcc/4.8.1/lib64 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/pppl/gcc/4.8.1/lib compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -ldl compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc_s compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtend.o compilers: Unknown arg /usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/crtend.o compilers: Checking arg /usr/lib/../lib64/crtn.o compilers: Unknown arg /usr/lib/../lib64/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1', '-L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1', '-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64', '-L/usr/pppl/gcc/4.8.1/lib64', '-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib', '-L/usr/pppl/gcc/4.8.1/lib', '-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1', '-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64', '-Wl,-rpath,/usr/pppl/gcc/4.8.1/lib', '-lstdc++', '-lm'] compilers: Check that Cxx libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -lstdc++ -lm -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -lstdc++ -lm -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: gcc -o /tmp/petsc-M4swUz/config.setCompilers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.setCompilers/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -lstdc++ -lm -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.setCompilers/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.setCompilers/conftest Executing: /tmp/petsc-M4swUz/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCxx11 from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:388) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:388) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.setCompilers/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/pppl/gcc/4.8.1/include/c++/4.8.1/random:35:0, from /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:4: /usr/pppl/gcc/4.8.1/include/c++/4.8.1/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:5:11: warning: identifier 'constexpr' is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:5:32: error: 'constexpr' does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:5:32: note: C++11 'constexpr' only available with -std=c++11 or -std=gnu++11 /tmp/petsc-M4swUz/config.setCompilers/conftest.cc: In function 'int main()': /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:10:11: error: 'random_device' is not a member of 'std' std::random_device rd; ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:10:30: error: expected ';' before 'rd' std::random_device rd; ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:11:11: error: 'mt19937' is not a member of 'std' std::mt19937 mt(rd()); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:11:24: error: expected ';' before 'mt' std::mt19937 mt(rd()); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:12:11: error: 'normal_distribution' is not a member of 'std' std::normal_distribution dist(0,1); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before 'double' std::normal_distribution dist(0,1); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:12:36: error: expected ';' before 'double' /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:13:33: error: 'mt' was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:13:35: error: 'dist' was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:13:24: warning: unused variable 'x' [-Wunused-variable] const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/pppl/gcc/4.8.1/include/c++/4.8.1/random:35:0, from /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:4: /usr/pppl/gcc/4.8.1/include/c++/4.8.1/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:5:11: warning: identifier 'constexpr' is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:5:32: error: 'constexpr' does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:5:32: note: C++11 'constexpr' only available with -std=c++11 or -std=gnu++11 /tmp/petsc-M4swUz/config.setCompilers/conftest.cc: In function 'int main()': /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:10:11: error: 'random_device' is not a member of 'std' std::random_device rd; ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:10:30: error: expected ';' before 'rd' std::random_device rd; ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:11:11: error: 'mt19937' is not a member of 'std' std::mt19937 mt(rd()); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:11:24: error: expected ';' before 'mt' std::mt19937 mt(rd()); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:12:11: error: 'normal_distribution' is not a member of 'std' std::normal_distribution dist(0,1); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before 'double' std::normal_distribution dist(0,1); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:12:36: error: expected ';' before 'double' /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:13:33: error: 'mt' was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:13:35: error: 'dist' was not declared in this scope const double x = dist(mt); ^ /tmp/petsc-M4swUz/config.setCompilers/conftest.cc:13:24: warning: unused variable 'x' [-Wunused-variable] const double x = dist(mt); ^ PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST setupFrameworkCompilers from config.compilers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/compilers.py:1503) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1503) ================================================================================ TEST configureClosure from config.utilities.closure(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /tmp/petsc-M4swUz/config.utilities.closure Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.closure/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.utilities.closure/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/u/dbrennan/Codes/petsc/config/PETSc/options/fortranCPP.py:21) TESTING: configureFortranCPP from PETSc.options.fortranCPP(config/PETSc/options/fortranCPP.py:21) Handle case where Fortran cannot preprocess properly Defined make rule ".F.o" with dependencies "" and code ['-@echo "Your system was not configured for Fortran use"', '-@echo " Check configure.log under the checkFortranCompiler test for the specific failure"', '-@echo " You can reconfigure using --with-fc= to enable Fortran"'] ================================================================================ TEST checkStdC from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: gcc -c -o /tmp/petsc-M4swUz/config.headers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 175 "/usr/include/string.h" 3 4 extern char *strdup (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 411 "/usr/include/string.h" 3 4 extern char *strerror (int __errnum) __attribute__ ((__nothrow__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 451 "/usr/include/string.h" 3 4 extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 182 "/usr/include/stdlib.h" 3 4 extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 # 565 "/usr/include/stdlib.h" 3 4 extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Executing: gcc -c -o /tmp/petsc-M4swUz/config.headers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.headers/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.headers/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.headers/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.headers/conftest Executing: /tmp/petsc-M4swUz/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 5 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 1 3 4 # 46 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 47 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 2 3 4 # 112 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 # 1 "/usr/include/bits/stat.h" 1 3 4 # 46 "/usr/include/bits/stat.h" 3 4 struct stat { __dev_t st_dev; __ino_t st_ino; __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; # 91 "/usr/include/bits/stat.h" 3 4 struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 4 long int __unused[3]; # 115 "/usr/include/bits/stat.h" 3 4 }; # 115 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 2 3 4 # 217 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern __inline__ int stat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern __inline__ int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 296 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern __inline__ int lstat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 325 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern int chmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__)); # 352 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__)); # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern int mkdir (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 377 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern __inline__ int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 396 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern int mkfifo (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 431 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, __const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))); # 474 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern int __xmknod (int __ver, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 5))); extern __inline__ int __attribute__ ((__nothrow__)) stat (__const char *__path, struct stat *__statbuf) { return __xstat (1, __path, __statbuf); } extern __inline__ int __attribute__ ((__nothrow__)) lstat (__const char *__path, struct stat *__statbuf) { return __lxstat (1, __path, __statbuf); } extern __inline__ int __attribute__ ((__nothrow__)) fstat (int __fd, struct stat *__statbuf) { return __fxstat (1, __fd, __statbuf); } # 527 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 extern __inline__ int __attribute__ ((__nothrow__)) mknod (__const char *__path, __mode_t __mode, __dev_t __dev) { return __xmknod (0, __path, __mode, &__dev); } # 596 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/stat.h" 3 4 # 6 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: gcc -c -o /tmp/petsc-M4swUz/config.headers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 417 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 23 "/usr/include/sys/time.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 24 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 28 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 32 "/usr/include/sys/time.h" 2 3 4 # 57 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)); # 191 "/usr/include/sys/time.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.headers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/math.h" 1 3 4 # 28 "/usr/include/math.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 29 "/usr/include/math.h" 2 3 4 # 1 "/usr/include/bits/huge_val.h" 1 3 4 # 35 "/usr/include/math.h" 2 3 4 # 47 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathdef.h" 1 3 4 # 48 "/usr/include/math.h" 2 3 4 # 71 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/bits/mathcalls.h" 3 4 extern double acos (double __x) __attribute__ ((__nothrow__)); extern double __acos (double __x) __attribute__ ((__nothrow__)); extern double asin (double __x) __attribute__ ((__nothrow__)); extern double __asin (double __x) __attribute__ ((__nothrow__)); extern double atan (double __x) __attribute__ ((__nothrow__)); extern double __atan (double __x) __attribute__ ((__nothrow__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double cos (double __x) __attribute__ ((__nothrow__)); extern double __cos (double __x) __attribute__ ((__nothrow__)); extern double sin (double __x) __attribute__ ((__nothrow__)); extern double __sin (double __x) __attribute__ ((__nothrow__)); extern double tan (double __x) __attribute__ ((__nothrow__)); extern double __tan (double __x) __attribute__ ((__nothrow__)); extern double cosh (double __x) __attribute__ ((__nothrow__)); extern double __cosh (double __x) __attribute__ ((__nothrow__)); extern double sinh (double __x) __attribute__ ((__nothrow__)); extern double __sinh (double __x) __attribute__ ((__nothrow__)); extern double tanh (double __x) __attribute__ ((__nothrow__)); extern double __tanh (double __x) __attribute__ ((__nothrow__)); # 87 "/usr/include/bits/mathcalls.h" 3 4 extern double acosh (double __x) __attribute__ ((__nothrow__)); extern double __acosh (double __x) __attribute__ ((__nothrow__)); extern double asinh (double __x) __attribute__ ((__nothrow__)); extern double __asinh (double __x) __attribute__ ((__nothrow__)); extern double atanh (double __x) __attribute__ ((__nothrow__)); extern double __atanh (double __x) __attribute__ ((__nothrow__)); extern double exp (double __x) __attribute__ ((__nothrow__)); extern double __exp (double __x) __attribute__ ((__nothrow__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double log (double __x) __attribute__ ((__nothrow__)); extern double __log (double __x) __attribute__ ((__nothrow__)); extern double log10 (double __x) __attribute__ ((__nothrow__)); extern double __log10 (double __x) __attribute__ ((__nothrow__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); # 127 "/usr/include/bits/mathcalls.h" 3 4 extern double expm1 (double __x) __attribute__ ((__nothrow__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__)); extern double log1p (double __x) __attribute__ ((__nothrow__)); extern double __log1p (double __x) __attribute__ ((__nothrow__)); extern double logb (double __x) __attribute__ ((__nothrow__)); extern double __logb (double __x) __attribute__ ((__nothrow__)); # 152 "/usr/include/bits/mathcalls.h" 3 4 extern double pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double sqrt (double __x) __attribute__ ((__nothrow__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double cbrt (double __x) __attribute__ ((__nothrow__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__)); extern double ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern int __isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double significand (double __x) __attribute__ ((__nothrow__)); extern double __significand (double __x) __attribute__ ((__nothrow__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 231 "/usr/include/bits/mathcalls.h" 3 4 extern int __isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__)); extern double __j0 (double) __attribute__ ((__nothrow__)); extern double j1 (double) __attribute__ ((__nothrow__)); extern double __j1 (double) __attribute__ ((__nothrow__)); extern double jn (int, double) __attribute__ ((__nothrow__)); extern double __jn (int, double) __attribute__ ((__nothrow__)); extern double y0 (double) __attribute__ ((__nothrow__)); extern double __y0 (double) __attribute__ ((__nothrow__)); extern double y1 (double) __attribute__ ((__nothrow__)); extern double __y1 (double) __attribute__ ((__nothrow__)); extern double yn (int, double) __attribute__ ((__nothrow__)); extern double __yn (int, double) __attribute__ ((__nothrow__)); extern double erf (double) __attribute__ ((__nothrow__)); extern double __erf (double) __attribute__ ((__nothrow__)); extern double erfc (double) __attribute__ ((__nothrow__)); extern double __erfc (double) __attribute__ ((__nothrow__)); extern double lgamma (double) __attribute__ ((__nothrow__)); extern double __lgamma (double) __attribute__ ((__nothrow__)); # 265 "/usr/include/bits/mathcalls.h" 3 4 extern double gamma (double) __attribute__ ((__nothrow__)); extern double __gamma (double) __attribute__ ((__nothrow__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double rint (double __x) __attribute__ ((__nothrow__)); extern double __rint (double __x) __attribute__ ((__nothrow__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern int ilogb (double __x) __attribute__ ((__nothrow__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__)); # 359 "/usr/include/bits/mathcalls.h" 3 4 extern double scalb (double __x, double __n) __attribute__ ((__nothrow__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__)); # 72 "/usr/include/math.h" 2 3 4 # 94 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/bits/mathcalls.h" 3 4 extern float acosf (float __x) __attribute__ ((__nothrow__)); extern float __acosf (float __x) __attribute__ ((__nothrow__)); extern float asinf (float __x) __attribute__ ((__nothrow__)); extern float __asinf (float __x) __attribute__ ((__nothrow__)); extern float atanf (float __x) __attribute__ ((__nothrow__)); extern float __atanf (float __x) __attribute__ ((__nothrow__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float cosf (float __x) __attribute__ ((__nothrow__)); extern float __cosf (float __x) __attribute__ ((__nothrow__)); extern float sinf (float __x) __attribute__ ((__nothrow__)); extern float __sinf (float __x) __attribute__ ((__nothrow__)); extern float tanf (float __x) __attribute__ ((__nothrow__)); extern float __tanf (float __x) __attribute__ ((__nothrow__)); extern float coshf (float __x) __attribute__ ((__nothrow__)); extern float __coshf (float __x) __attribute__ ((__nothrow__)); extern float sinhf (float __x) __attribute__ ((__nothrow__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__)); extern float tanhf (float __x) __attribute__ ((__nothrow__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__)); # 87 "/usr/include/bits/mathcalls.h" 3 4 extern float acoshf (float __x) __attribute__ ((__nothrow__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__)); extern float asinhf (float __x) __attribute__ ((__nothrow__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__)); extern float atanhf (float __x) __attribute__ ((__nothrow__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__)); extern float expf (float __x) __attribute__ ((__nothrow__)); extern float __expf (float __x) __attribute__ ((__nothrow__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float logf (float __x) __attribute__ ((__nothrow__)); extern float __logf (float __x) __attribute__ ((__nothrow__)); extern float log10f (float __x) __attribute__ ((__nothrow__)); extern float __log10f (float __x) __attribute__ ((__nothrow__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); # 127 "/usr/include/bits/mathcalls.h" 3 4 extern float expm1f (float __x) __attribute__ ((__nothrow__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__)); extern float log1pf (float __x) __attribute__ ((__nothrow__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__)); extern float logbf (float __x) __attribute__ ((__nothrow__)); extern float __logbf (float __x) __attribute__ ((__nothrow__)); # 152 "/usr/include/bits/mathcalls.h" 3 4 extern float powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__)); extern float ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern int __isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float significandf (float __x) __attribute__ ((__nothrow__)); extern float __significandf (float __x) __attribute__ ((__nothrow__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 231 "/usr/include/bits/mathcalls.h" 3 4 extern int __isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__)); extern float __j0f (float) __attribute__ ((__nothrow__)); extern float j1f (float) __attribute__ ((__nothrow__)); extern float __j1f (float) __attribute__ ((__nothrow__)); extern float jnf (int, float) __attribute__ ((__nothrow__)); extern float __jnf (int, float) __attribute__ ((__nothrow__)); extern float y0f (float) __attribute__ ((__nothrow__)); extern float __y0f (float) __attribute__ ((__nothrow__)); extern float y1f (float) __attribute__ ((__nothrow__)); extern float __y1f (float) __attribute__ ((__nothrow__)); extern float ynf (int, float) __attribute__ ((__nothrow__)); extern float __ynf (int, float) __attribute__ ((__nothrow__)); extern float erff (float) __attribute__ ((__nothrow__)); extern float __erff (float) __attribute__ ((__nothrow__)); extern float erfcf (float) __attribute__ ((__nothrow__)); extern float __erfcf (float) __attribute__ ((__nothrow__)); extern float lgammaf (float) __attribute__ ((__nothrow__)); extern float __lgammaf (float) __attribute__ ((__nothrow__)); # 265 "/usr/include/bits/mathcalls.h" 3 4 extern float gammaf (float) __attribute__ ((__nothrow__)); extern float __gammaf (float) __attribute__ ((__nothrow__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float rintf (float __x) __attribute__ ((__nothrow__)); extern float __rintf (float __x) __attribute__ ((__nothrow__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__)); # 359 "/usr/include/bits/mathcalls.h" 3 4 extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__)); # 95 "/usr/include/math.h" 2 3 4 # 141 "/usr/include/math.h" 3 4 # 1 "/usr/include/bits/mathcalls.h" 1 3 4 # 53 "/usr/include/bits/mathcalls.h" 3 4 extern long double acosl (long double __x) __attribute__ ((__nothrow__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__)); # 87 "/usr/include/bits/mathcalls.h" 3 4 extern long double acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double expl (long double __x) __attribute__ ((__nothrow__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double logl (long double __x) __attribute__ ((__nothrow__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); # 127 "/usr/include/bits/mathcalls.h" 3 4 extern long double expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__)); # 152 "/usr/include/bits/mathcalls.h" 3 4 extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 231 "/usr/include/bits/mathcalls.h" 3 4 extern int __isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__)); extern long double __j0l (long double) __attribute__ ((__nothrow__)); extern long double j1l (long double) __attribute__ ((__nothrow__)); extern long double __j1l (long double) __attribute__ ((__nothrow__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__)); extern long double y0l (long double) __attribute__ ((__nothrow__)); extern long double __y0l (long double) __attribute__ ((__nothrow__)); extern long double y1l (long double) __attribute__ ((__nothrow__)); extern long double __y1l (long double) __attribute__ ((__nothrow__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__)); extern long double erfl (long double) __attribute__ ((__nothrow__)); extern long double __erfl (long double) __attribute__ ((__nothrow__)); extern long double erfcl (long double) __attribute__ ((__nothrow__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__)); extern long double lgammal (long double) __attribute__ ((__nothrow__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__)); # 265 "/usr/include/bits/mathcalls.h" 3 4 extern long double gammal (long double) __attribute__ ((__nothrow__)); extern long double __gammal (long double) __attribute__ ((__nothrow__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__)); # 359 "/usr/include/bits/mathcalls.h" 3 4 extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); # 142 "/usr/include/math.h" 2 3 4 # 157 "/usr/include/math.h" 3 4 extern int signgam; # 291 "/usr/include/math.h" 3 4 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; # 316 "/usr/include/math.h" 3 4 struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 472 "/usr/include/math.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATH_H" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.headers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 24 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 25 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 24 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 25 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 44 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 4 # 40 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/sys/uio.h" 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 31 "/usr/include/sys/socket.h" 2 3 4 # 40 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 29 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 30 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 171 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 187 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char __ss_padding[(128 - (sizeof (unsigned short int)) - sizeof (unsigned long int))]; unsigned long int __ss_align; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 274 "/usr/include/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 304 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 331 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 377 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 378 "/usr/include/bits/socket.h" 2 3 4 # 411 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); # 129 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); # 214 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 254 "/usr/include/sys/socket.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 4 # 24 "/usr/include/malloc.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 25 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 147 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef int wchar_t; # 26 "/usr/include/malloc.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 30 "/usr/include/stdio.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 35 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 37 "/usr/include/stdio.h" 2 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/stdio.h" 3 4 typedef struct _IO_FILE __FILE; # 75 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/libio.h" 1 3 4 # 32 "/usr/include/libio.h" 3 4 # 1 "/usr/include/_G_config.h" 1 3 4 # 15 "/usr/include/_G_config.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 16 "/usr/include/_G_config.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/wchar.h" 1 3 4 # 57 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/wchar.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 353 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef unsigned int wint_t; # 58 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/wchar.h" 2 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 60 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/wchar.h" 2 3 4 # 85 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/wchar.h" 3 4 typedef struct { int __count; union { wint_t __wch; char __wchb[4]; } __value; } __mbstate_t; # 21 "/usr/include/_G_config.h" 2 3 4 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 53 "/usr/include/_G_config.h" 3 4 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 33 "/usr/include/libio.h" 2 3 4 # 53 "/usr/include/libio.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdarg.h" 1 3 4 # 40 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 54 "/usr/include/libio.h" 2 3 4 # 170 "/usr/include/libio.h" 3 4 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 4 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 4 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 271 "/usr/include/libio.h" 3 4 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 4 __off64_t _offset; # 328 "/usr/include/libio.h" 3 4 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 364 "/usr/include/libio.h" 3 4 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 416 "/usr/include/libio.h" 3 4 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 460 "/usr/include/libio.h" 3 4 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__)); # 490 "/usr/include/libio.h" 3 4 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__)); # 76 "/usr/include/stdio.h" 2 3 4 # 109 "/usr/include/stdio.h" 3 4 typedef _G_fpos_t fpos_t; # 161 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/bits/stdio_lim.h" 1 3 4 # 162 "/usr/include/stdio.h" 2 3 4 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) __attribute__ ((__nothrow__)); extern int rename (__const char *__old, __const char *__new) __attribute__ ((__nothrow__)); extern FILE *tmpfile (void) ; # 208 "/usr/include/stdio.h" 3 4 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__)) ; # 226 "/usr/include/stdio.h" 3 4 extern char *tempnam (__const char *__dir, __const char *__pfx) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); # 251 "/usr/include/stdio.h" 3 4 extern int fflush_unlocked (FILE *__stream); # 265 "/usr/include/stdio.h" 3 4 extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 4 # 305 "/usr/include/stdio.h" 3 4 extern FILE *fdopen (int __fd, __const char *__modes) __attribute__ ((__nothrow__)) ; # 328 "/usr/include/stdio.h" 3 4 extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__)); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 424 "/usr/include/stdio.h" 3 4 extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); # 467 "/usr/include/stdio.h" 3 4 # 530 "/usr/include/stdio.h" 3 4 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); # 554 "/usr/include/stdio.h" 3 4 extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); # 565 "/usr/include/stdio.h" 3 4 extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); # 598 "/usr/include/stdio.h" 3 4 extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; # 679 "/usr/include/stdio.h" 3 4 extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; # 732 "/usr/include/stdio.h" 3 4 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); # 768 "/usr/include/stdio.h" 3 4 extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 787 "/usr/include/stdio.h" 3 4 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 4 # 819 "/usr/include/stdio.h" 3 4 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 4 # 27 "/usr/include/bits/sys_errlist.h" 3 4 extern int sys_nerr; extern __const char *__const sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 4 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; # 868 "/usr/include/stdio.h" 3 4 extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__)); # 908 "/usr/include/stdio.h" 3 4 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__)); # 938 "/usr/include/stdio.h" 3 4 # 27 "/usr/include/malloc.h" 2 3 4 # 48 "/usr/include/malloc.h" 3 4 extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void * pvalloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__)); # 135 "/usr/include/malloc.h" 3 4 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__)); extern void malloc_stats (void) __attribute__ ((__nothrow__)); extern int malloc_info (int __options, FILE *__fp); extern void *malloc_get_state (void) __attribute__ ((__nothrow__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__)); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void *__ptr, __const void *) ; extern void *(*__malloc_hook) (size_t __size, __const void *) ; extern void *(*__realloc_hook) (void *__ptr, size_t __size, __const void *) ; extern void *(*__memalign_hook) (size_t __alignment, size_t __size, __const void *) ; extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 28 "/usr/include/time.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 29 "/usr/include/time.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 417 "/usr/include/time.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 4 # 22 "/usr/include/endian.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 23 "/usr/include/endian.h" 2 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 28 "/usr/include/strings.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 29 "/usr/include/strings.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/strings.h" 2 3 4 extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)); # 74 "/usr/include/strings.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 102 "/usr/include/strings.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((const)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); # 138 "/usr/include/strings.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: inttypes.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/inttypes.h" 1 3 4 # 26 "/usr/include/inttypes.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/inttypes.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 1 3 4 # 9 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 2 3 4 # 29 "/usr/include/inttypes.h" 2 3 4 typedef int __gwchar_t; # 274 "/usr/include/inttypes.h" 3 4 typedef struct { long int quot; long int rem; } imaxdiv_t; # 298 "/usr/include/inttypes.h" 3 4 extern intmax_t imaxabs (intmax_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern intmax_t strtoimax (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)); extern uintmax_t strtoumax (__const char *__restrict __nptr, char ** __restrict __endptr, int __base) __attribute__ ((__nothrow__)); extern intmax_t wcstoimax (__const __gwchar_t *__restrict __nptr, __gwchar_t **__restrict __endptr, int __base) __attribute__ ((__nothrow__)); extern uintmax_t wcstoumax (__const __gwchar_t *__restrict __nptr, __gwchar_t ** __restrict __endptr, int __base) __attribute__ ((__nothrow__)); # 442 "/usr/include/inttypes.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_INTTYPES_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 24 "/usr/include/sched.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 25 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 4 # 74 "/usr/include/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) __attribute__ ((__nothrow__)); extern int unshare (int __flags) __attribute__ ((__nothrow__)); extern int sched_getcpu (void) __attribute__ ((__nothrow__)); struct __sched_param { int __sched_priority; }; # 116 "/usr/include/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 199 "/usr/include/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__)); extern int sched_yield (void) __attribute__ ((__nothrow__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__)); # 126 "/usr/include/sched.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: cxxabi.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 23 "/usr/include/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 11 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 67 "/usr/include/linux/kernel.h" 3 4 struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 26 "/usr/include/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__)); extern int get_nprocs (void) __attribute__ ((__nothrow__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 27 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 28 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/signal.h" 1 3 4 # 31 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 104 "/usr/include/bits/sigset.h" 3 4 extern int __sigismember (__const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 34 "/usr/include/signal.h" 2 3 4 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 58 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/signum.h" 1 3 4 # 59 "/usr/include/signal.h" 2 3 4 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 77 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/siginfo.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 26 "/usr/include/bits/siginfo.h" 2 3 4 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 51 "/usr/include/bits/siginfo.h" 3 4 typedef struct siginfo { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __clock_t si_utime; __clock_t si_stime; } _sigchld; struct { void *si_addr; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; } _sifields; } siginfo_t; # 129 "/usr/include/bits/siginfo.h" 3 4 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 273 "/usr/include/bits/siginfo.h" 3 4 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); void *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 80 "/usr/include/signal.h" 2 3 4 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); # 99 "/usr/include/signal.h" 3 4 extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); # 113 "/usr/include/signal.h" 3 4 # 126 "/usr/include/signal.h" 3 4 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__)); extern int raise (int __sig) __attribute__ ((__nothrow__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__)); extern void psignal (int __sig, __const char *__s); extern void psiginfo (__const siginfo_t *__pinfo, __const char *__s); # 168 "/usr/include/signal.h" 3 4 extern int __sigpause (int __sig_or_mask, int __is_sig); # 196 "/usr/include/signal.h" 3 4 extern int sigblock (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); # 216 "/usr/include/signal.h" 3 4 typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (__const sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 252 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/sigaction.h" 1 3 4 # 25 "/usr/include/bits/sigaction.h" 3 4 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 253 "/usr/include/signal.h" 2 3 4 extern int sigprocmask (int __how, __const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__)); extern int sigsuspend (__const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, __const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (__const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (__const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (__const sigset_t *__restrict __set, siginfo_t *__restrict __info, __const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, __const union sigval __val) __attribute__ ((__nothrow__)); # 310 "/usr/include/signal.h" 3 4 extern __const char *__const _sys_siglist[65]; extern __const char *__const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; # 334 "/usr/include/signal.h" 3 4 extern int sigvec (int __sig, __const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__)); # 1 "/usr/include/bits/sigcontext.h" 1 3 4 # 26 "/usr/include/bits/sigcontext.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/bits/sigcontext.h" 2 3 4 struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 109 "/usr/include/bits/sigcontext.h" 3 4 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { unsigned long r8; unsigned long r9; unsigned long r10; unsigned long r11; unsigned long r12; unsigned long r13; unsigned long r14; unsigned long r15; unsigned long rdi; unsigned long rsi; unsigned long rbp; unsigned long rbx; unsigned long rdx; unsigned long rax; unsigned long rcx; unsigned long rsp; unsigned long rip; unsigned long eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; unsigned long err; unsigned long trapno; unsigned long oldmask; unsigned long cr2; struct _fpstate * fpstate; unsigned long __reserved1 [8]; }; # 340 "/usr/include/signal.h" 2 3 4 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__)); # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 350 "/usr/include/signal.h" 2 3 4 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__)); # 1 "/usr/include/bits/sigstack.h" 1 3 4 # 26 "/usr/include/bits/sigstack.h" 3 4 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; # 50 "/usr/include/bits/sigstack.h" 3 4 typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 357 "/usr/include/signal.h" 2 3 4 # 365 "/usr/include/signal.h" 3 4 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int sigaltstack (__const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__)); # 394 "/usr/include/signal.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 395 "/usr/include/signal.h" 2 3 4 # 1 "/usr/include/bits/sigthread.h" 1 3 4 # 31 "/usr/include/bits/sigthread.h" 3 4 extern int pthread_sigmask (int __how, __const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__)); # 396 "/usr/include/signal.h" 2 3 4 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__)); # 32 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 25 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/bits/resource.h" 1 3 4 # 33 "/usr/include/bits/resource.h" 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_NLIMITS = 15, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 127 "/usr/include/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 154 "/usr/include/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 172 "/usr/include/bits/resource.h" 3 4 }; # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 176 "/usr/include/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 26 "/usr/include/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 70 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 88 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__)); # 33 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/bits/waitflags.h" 1 3 4 # 39 "/usr/include/sys/wait.h" 2 3 4 # 63 "/usr/include/sys/wait.h" 3 4 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 80 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/bits/waitstatus.h" 1 3 4 # 65 "/usr/include/bits/waitstatus.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 66 "/usr/include/bits/waitstatus.h" 2 3 4 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; } __wait_stopped; }; # 81 "/usr/include/sys/wait.h" 2 3 4 # 102 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 116 "/usr/include/sys/wait.h" 3 4 extern __pid_t wait (__WAIT_STATUS __stat_loc); # 139 "/usr/include/sys/wait.h" 3 4 extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); # 1 "/usr/include/bits/siginfo.h" 1 3 4 # 25 "/usr/include/bits/siginfo.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 26 "/usr/include/bits/siginfo.h" 2 3 4 # 144 "/usr/include/sys/wait.h" 2 3 4 # 155 "/usr/include/sys/wait.h" 3 4 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 25 "/usr/include/stdlib.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 26 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 324 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef int wchar_t; # 34 "/usr/include/stdlib.h" 2 3 4 # 96 "/usr/include/stdlib.h" 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; # 140 "/usr/include/stdlib.h" 3 4 extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 182 "/usr/include/stdlib.h" 3 4 extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 311 "/usr/include/stdlib.h" 3 4 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 321 "/usr/include/stdlib.h" 2 3 4 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 4 # 25 "/usr/include/alloca.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 26 "/usr/include/alloca.h" 2 3 4 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 4 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 4 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 4 # 565 "/usr/include/stdlib.h" 3 4 extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); # 606 "/usr/include/stdlib.h" 3 4 extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 620 "/usr/include/stdlib.h" 3 4 extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 642 "/usr/include/stdlib.h" 3 4 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 663 "/usr/include/stdlib.h" 3 4 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 712 "/usr/include/stdlib.h" 3 4 extern int system (__const char *__command) ; # 734 "/usr/include/stdlib.h" 3 4 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 752 "/usr/include/stdlib.h" 3 4 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); # 771 "/usr/include/stdlib.h" 3 4 extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; # 808 "/usr/include/stdlib.h" 3 4 extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 948 "/usr/include/stdlib.h" 3 4 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 964 "/usr/include/stdlib.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 23 "/usr/include/pthread.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 24 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 25 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 31 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 35 "/usr/include/sched.h" 2 3 4 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 4 # 74 "/usr/include/bits/sched.h" 3 4 struct sched_param { int __sched_priority; }; extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) __attribute__ ((__nothrow__)); extern int unshare (int __flags) __attribute__ ((__nothrow__)); extern int sched_getcpu (void) __attribute__ ((__nothrow__)); struct __sched_param { int __sched_priority; }; # 116 "/usr/include/bits/sched.h" 3 4 typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 199 "/usr/include/bits/sched.h" 3 4 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__)); # 44 "/usr/include/sched.h" 2 3 4 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__)); extern int sched_yield (void) __attribute__ ((__nothrow__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__)); # 126 "/usr/include/sched.h" 3 4 # 26 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 30 "/usr/include/time.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 39 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 43 "/usr/include/time.h" 2 3 4 # 58 "/usr/include/time.h" 3 4 typedef __clock_t clock_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 131 "/usr/include/time.h" 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 180 "/usr/include/time.h" 3 4 extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 230 "/usr/include/time.h" 3 4 extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); # 313 "/usr/include/time.h" 3 4 extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 328 "/usr/include/time.h" 3 4 extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 417 "/usr/include/time.h" 3 4 # 27 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/setjmp.h" 1 3 4 # 27 "/usr/include/bits/setjmp.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 31 "/usr/include/pthread.h" 2 3 4 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP # 61 "/usr/include/pthread.h" 3 4 }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; # 115 "/usr/include/pthread.h" 3 4 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 147 "/usr/include/pthread.h" 3 4 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; # 182 "/usr/include/pthread.h" 3 4 struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; # 220 "/usr/include/pthread.h" 3 4 extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 263 "/usr/include/pthread.h" 3 4 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 413 "/usr/include/pthread.h" 3 4 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__)); # 478 "/usr/include/pthread.h" 3 4 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); # 490 "/usr/include/pthread.h" 3 4 extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); # 524 "/usr/include/pthread.h" 3 4 struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 664 "/usr/include/pthread.h" 3 4 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 676 "/usr/include/pthread.h" 3 4 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 717 "/usr/include/pthread.h" 3 4 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); # 790 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 822 "/usr/include/pthread.h" 3 4 extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 872 "/usr/include/pthread.h" 3 4 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); # 984 "/usr/include/pthread.h" 3 4 extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 1028 "/usr/include/pthread.h" 3 4 extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 1095 "/usr/include/pthread.h" 3 4 extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__)); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) __attribute__ ((__nothrow__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 1129 "/usr/include/pthread.h" 3 4 extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__)); # 1143 "/usr/include/pthread.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 26 "/usr/include/setjmp.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/bits/setjmp.h" 1 3 4 # 27 "/usr/include/bits/setjmp.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 28 "/usr/include/bits/setjmp.h" 2 3 4 typedef long int __jmp_buf[8]; # 31 "/usr/include/setjmp.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 32 "/usr/include/setjmp.h" 2 3 4 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); # 78 "/usr/include/setjmp.h" 3 4 extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; # 110 "/usr/include/setjmp.h" 3 4 extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 120 "/usr/include/setjmp.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 26 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/sys/utsname.h" 2 3 4 # 1 "/usr/include/bits/utsname.h" 1 3 4 # 31 "/usr/include/sys/utsname.h" 2 3 4 # 49 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; # 82 "/usr/include/sys/utsname.h" 3 4 extern int uname (struct utsname *__name) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: machine/endian.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 1 3 4 # 34 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 1 3 4 # 168 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 28 "/usr/include/limits.h" 2 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/bits/local_lim.h" 2 3 4 # 158 "/usr/include/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 169 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 2 3 4 # 8 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 2 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 27 "/usr/include/fcntl.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 28 "/usr/include/fcntl.h" 2 3 4 # 1 "/usr/include/bits/fcntl.h" 1 3 4 # 25 "/usr/include/bits/fcntl.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 26 "/usr/include/bits/fcntl.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/bits/fcntl.h" 2 3 4 # 165 "/usr/include/bits/fcntl.h" 3 4 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 250 "/usr/include/bits/fcntl.h" 3 4 # 295 "/usr/include/bits/fcntl.h" 3 4 # 35 "/usr/include/fcntl.h" 2 3 4 # 122 "/usr/include/fcntl.h" 3 4 extern int fcntl (int __fd, int __cmd, ...); # 131 "/usr/include/fcntl.h" 3 4 extern int open (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 177 "/usr/include/fcntl.h" 3 4 extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1))); # 206 "/usr/include/fcntl.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len); # 223 "/usr/include/fcntl.h" 3 4 extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len, int __advise) __attribute__ ((__nothrow__)); # 245 "/usr/include/fcntl.h" 3 4 extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len); # 267 "/usr/include/fcntl.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 27 "/usr/include/string.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 28 "/usr/include/string.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 35 "/usr/include/string.h" 2 3 4 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 4 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 126 "/usr/include/string.h" 3 4 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 175 "/usr/include/string.h" 3 4 extern char *strdup (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 210 "/usr/include/string.h" 3 4 # 235 "/usr/include/string.h" 3 4 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 4 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 281 "/usr/include/string.h" 3 4 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 4 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 4 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 397 "/usr/include/string.h" 3 4 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 411 "/usr/include/string.h" 3 4 extern char *strerror (int __errnum) __attribute__ ((__nothrow__)); # 427 "/usr/include/string.h" 3 4 extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 451 "/usr/include/string.h" 3 4 extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 4 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 4 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 536 "/usr/include/string.h" 3 4 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 559 "/usr/include/string.h" 3 4 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 646 "/usr/include/string.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 26 "/usr/include/sys/times.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 56 "/usr/include/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 4 typedef __clock_t clock_t; # 30 "/usr/include/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 1 3 4 # 9 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 26 "/usr/include/stdint.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 2 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 26 "/usr/include/pwd.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 34 "/usr/include/pwd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 4 # 45 "/usr/include/stdio.h" 3 4 struct _IO_FILE; typedef struct _IO_FILE FILE; # 65 "/usr/include/pwd.h" 2 3 4 # 73 "/usr/include/pwd.h" 3 4 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); # 95 "/usr/include/pwd.h" 3 4 extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (__const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (__const char *__name); # 140 "/usr/include/pwd.h" 3 4 extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 164 "/usr/include/pwd.h" 3 4 extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 184 "/usr/include/pwd.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/float.h" 1 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 26 "/usr/include/sys/param.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 1 3 4 # 34 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 1 3 4 # 168 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 27 "/usr/include/limits.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 28 "/usr/include/limits.h" 2 3 4 # 145 "/usr/include/limits.h" 3 4 # 1 "/usr/include/bits/posix1_lim.h" 1 3 4 # 157 "/usr/include/bits/posix1_lim.h" 3 4 # 1 "/usr/include/bits/local_lim.h" 1 3 4 # 39 "/usr/include/bits/local_lim.h" 3 4 # 1 "/usr/include/linux/limits.h" 1 3 4 # 40 "/usr/include/bits/local_lim.h" 2 3 4 # 158 "/usr/include/bits/posix1_lim.h" 2 3 4 # 146 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/bits/posix2_lim.h" 1 3 4 # 150 "/usr/include/limits.h" 2 3 4 # 169 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 2 3 4 # 8 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/limits.h" 2 3 4 # 27 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/linux/param.h" 1 3 4 # 1 "/usr/include/asm/param.h" 1 3 4 # 1 "/usr/include/asm-generic/param.h" 1 3 4 # 1 "/usr/include/asm/param.h" 2 3 4 # 5 "/usr/include/linux/param.h" 2 3 4 # 29 "/usr/include/sys/param.h" 2 3 4 # 52 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 53 "/usr/include/sys/param.h" 2 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 26 "/usr/include/netdb.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 24 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 1 3 4 # 9 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 2 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 26 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 24 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 201 "/usr/include/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 25 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 44 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 4 # 40 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/sys/uio.h" 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 31 "/usr/include/sys/socket.h" 2 3 4 # 40 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 29 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 30 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 171 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 187 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char __ss_padding[(128 - (sizeof (unsigned short int)) - sizeof (unsigned long int))]; unsigned long int __ss_align; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 274 "/usr/include/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 304 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 331 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 377 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 378 "/usr/include/bits/socket.h" 2 3 4 # 411 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); # 129 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); # 214 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 254 "/usr/include/sys/socket.h" 3 4 # 26 "/usr/include/netinet/in.h" 2 3 4 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/bits/in.h" 1 3 4 # 111 "/usr/include/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 40 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135, }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; # 211 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 239 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 376 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 388 "/usr/include/netinet/in.h" 2 3 4 # 451 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__)); # 576 "/usr/include/netinet/in.h" 3 4 # 29 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/rpc/netdb.h" 1 3 4 # 42 "/usr/include/rpc/netdb.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 43 "/usr/include/rpc/netdb.h" 2 3 4 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__)); extern void endrpcent (void) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcbyname (__const char *__name) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__)); extern int getrpcbyname_r (__const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); # 34 "/usr/include/netdb.h" 2 3 4 # 43 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/bits/netdb.h" 1 3 4 # 27 "/usr/include/bits/netdb.h" 3 4 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 44 "/usr/include/netdb.h" 2 3 4 # 54 "/usr/include/netdb.h" 3 4 extern int *__h_errno_location (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 93 "/usr/include/netdb.h" 3 4 extern void herror (__const char *__str) __attribute__ ((__nothrow__)); extern __const char *hstrerror (int __err_num) __attribute__ ((__nothrow__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (__const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (__const char *__name); # 156 "/usr/include/netdb.h" 3 4 extern struct hostent *gethostbyname2 (__const char *__name, int __af); # 168 "/usr/include/netdb.h" 3 4 extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (__const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (__const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (__const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); # 199 "/usr/include/netdb.h" 3 4 extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (__const char *__name); # 238 "/usr/include/netdb.h" 3 4 extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (__const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (__const char *__name, __const char *__proto); extern struct servent *getservbyport (int __port, __const char *__proto); # 310 "/usr/include/netdb.h" 3 4 extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (__const char *__restrict __name, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (__const char *__name); extern struct protoent *getprotobynumber (int __proto); # 376 "/usr/include/netdb.h" 3 4 extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (__const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); # 397 "/usr/include/netdb.h" 3 4 extern int setnetgrent (__const char *__netgroup); extern void endnetgrent (void); # 414 "/usr/include/netdb.h" 3 4 extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); # 425 "/usr/include/netdb.h" 3 4 extern int innetgr (__const char *__netgroup, __const char *__host, __const char *__user, __const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); # 453 "/usr/include/netdb.h" 3 4 extern int rcmd (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p); # 465 "/usr/include/netdb.h" 3 4 extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 481 "/usr/include/netdb.h" 3 4 extern int rexec (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p); # 493 "/usr/include/netdb.h" 3 4 extern int rexec_af (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); # 507 "/usr/include/netdb.h" 3 4 extern int ruserok (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser); # 517 "/usr/include/netdb.h" 3 4 extern int ruserok_af (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); # 530 "/usr/include/netdb.h" 3 4 extern int iruserok (uint32_t __raddr, int __suser, __const char *__remuser, __const char *__locuser); # 541 "/usr/include/netdb.h" 3 4 extern int iruserok_af (__const void *__raddr, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); # 553 "/usr/include/netdb.h" 3 4 extern int rresvport (int *__alport); # 562 "/usr/include/netdb.h" 3 4 extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 664 "/usr/include/netdb.h" 3 4 extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__)); extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__)); extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 715 "/usr/include/netdb.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 23 "/usr/include/search.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 24 "/usr/include/search.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 27 "/usr/include/search.h" 2 3 4 # 45 "/usr/include/search.h" 3 4 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__)); extern void remque (void *__elem) __attribute__ ((__nothrow__)); typedef int (*__compar_fn_t) (__const void *, __const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; # 88 "/usr/include/search.h" 3 4 extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__)); extern void hdestroy (void) __attribute__ ((__nothrow__)); # 119 "/usr/include/search.h" 3 4 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (__const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (__const void *__key, void *__const *__rootp, __compar_fn_t __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 165 "/usr/include/search.h" 3 4 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 4 # 31 "/usr/include/sys/procfs.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 32 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 25 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 28 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 32 "/usr/include/sys/time.h" 2 3 4 # 57 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; # 73 "/usr/include/sys/time.h" 3 4 extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)); # 191 "/usr/include/sys/time.h" 3 4 # 33 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 34 "/usr/include/sys/procfs.h" 2 3 4 # 1 "/usr/include/sys/user.h" 1 3 4 # 26 "/usr/include/sys/user.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 27 "/usr/include/sys/user.h" 2 3 4 struct user_fpregs_struct { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; __uint32_t st_space[32]; __uint32_t xmm_space[64]; __uint32_t padding[24]; }; struct user_regs_struct { unsigned long r15; unsigned long r14; unsigned long r13; unsigned long r12; unsigned long rbp; unsigned long rbx; unsigned long r11; unsigned long r10; unsigned long r9; unsigned long r8; unsigned long rax; unsigned long rcx; unsigned long rdx; unsigned long rsi; unsigned long rdi; unsigned long orig_rax; unsigned long rip; unsigned long cs; unsigned long eflags; unsigned long rsp; unsigned long ss; unsigned long fs_base; unsigned long gs_base; unsigned long ds; unsigned long es; unsigned long fs; unsigned long gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; unsigned long int u_tsize; unsigned long int u_dsize; unsigned long int u_ssize; unsigned long start_code; unsigned long start_stack; long int signal; int reserved; struct user_regs_struct* u_ar0; struct user_fpregs_struct* u_fpstate; unsigned long int magic; char u_comm [32]; unsigned long int u_debugreg [8]; }; # 35 "/usr/include/sys/procfs.h" 2 3 4 typedef unsigned long elf_greg_t; typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 60 "/usr/include/sys/procfs.h" 3 4 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; # 79 "/usr/include/sys/procfs.h" 3 4 struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 22 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 23 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/bits/resource.h" 1 3 4 # 25 "/usr/include/bits/resource.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/bits/resource.h" 2 3 4 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_NLIMITS = 15, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; # 127 "/usr/include/bits/resource.h" 3 4 typedef __rlim_t rlim_t; struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 154 "/usr/include/bits/resource.h" 3 4 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 172 "/usr/include/bits/resource.h" 3 4 }; # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 176 "/usr/include/bits/resource.h" 2 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 26 "/usr/include/sys/resource.h" 2 3 4 typedef __id_t id_t; # 43 "/usr/include/sys/resource.h" 3 4 typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 70 "/usr/include/sys/resource.h" 3 4 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 88 "/usr/include/sys/resource.h" 3 4 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 26 "/usr/include/unistd.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/unistd.h" 2 3 4 # 203 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/bits/posix_opt.h" 1 3 4 # 204 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/bits/environments.h" 1 3 4 # 23 "/usr/include/bits/environments.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/environments.h" 2 3 4 # 208 "/usr/include/unistd.h" 2 3 4 # 218 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 219 "/usr/include/unistd.h" 2 3 4 typedef __ssize_t ssize_t; # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 228 "/usr/include/unistd.h" 2 3 4 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 256 "/usr/include/unistd.h" 3 4 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; # 288 "/usr/include/unistd.h" 3 4 extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 331 "/usr/include/unistd.h" 3 4 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__)); # 350 "/usr/include/unistd.h" 3 4 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, __const void *__buf, size_t __n) ; # 414 "/usr/include/unistd.h" 3 4 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__)) ; # 429 "/usr/include/unistd.h" 3 4 extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__)); # 441 "/usr/include/unistd.h" 3 4 extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__)); extern int usleep (__useconds_t __useconds); # 466 "/usr/include/unistd.h" 3 4 extern int pause (void); extern int chown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) ; extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 494 "/usr/include/unistd.h" 3 4 extern int chdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__)) ; # 508 "/usr/include/unistd.h" 3 4 extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__)) ; # 522 "/usr/include/unistd.h" 3 4 extern char *getwd (char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__)); # 540 "/usr/include/unistd.h" 3 4 extern char **__environ; extern int execve (__const char *__path, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 560 "/usr/include/unistd.h" 3 4 extern int execv (__const char *__path, char *__const __argv[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (__const char *__file, char *__const __argv[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (__const char *__file, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 595 "/usr/include/unistd.h" 3 4 extern int nice (int __inc) __attribute__ ((__nothrow__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/bits/confname.h" 1 3 4 # 26 "/usr/include/bits/confname.h" 3 4 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 607 "/usr/include/unistd.h" 2 3 4 extern long int pathconf (__const char *__path, int __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__)); # 643 "/usr/include/unistd.h" 3 4 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__)); # 652 "/usr/include/unistd.h" 3 4 extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__)); # 669 "/usr/include/unistd.h" 3 4 extern int setpgrp (void) __attribute__ ((__nothrow__)); # 686 "/usr/include/unistd.h" 3 4 extern __pid_t setsid (void) __attribute__ ((__nothrow__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__)) ; # 719 "/usr/include/unistd.h" 3 4 extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__)); extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__)); extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__)); extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__)); extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__)); extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__)); # 775 "/usr/include/unistd.h" 3 4 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__)); extern int ttyslot (void) __attribute__ ((__nothrow__)); extern int link (__const char *__from, __const char *__to) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; # 822 "/usr/include/unistd.h" 3 4 extern int symlink (__const char *__from, __const char *__to) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (__const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; # 845 "/usr/include/unistd.h" 3 4 extern int unlink (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 854 "/usr/include/unistd.h" 3 4 extern int rmdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 890 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/getopt.h" 1 3 4 # 59 "/usr/include/getopt.h" 3 4 extern char *optarg; # 73 "/usr/include/getopt.h" 3 4 extern int optind; extern int opterr; extern int optopt; # 152 "/usr/include/getopt.h" 3 4 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__)); extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __asm__ ("" "__posix_getopt") __attribute__ ((__nothrow__)); # 891 "/usr/include/unistd.h" 2 3 4 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (__const char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (__const char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__)); extern int revoke (__const char *__file) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int acct (__const char *__name) __attribute__ ((__nothrow__)); extern char *getusershell (void) __attribute__ ((__nothrow__)); extern void endusershell (void) __attribute__ ((__nothrow__)); extern void setusershell (void) __attribute__ ((__nothrow__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__)) ; extern int chroot (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1))); # 976 "/usr/include/unistd.h" 3 4 extern int fsync (int __fd); extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__)); extern int getpagesize (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__)); # 1007 "/usr/include/unistd.h" 3 4 extern int truncate (__const char *__file, __off_t __length) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 1026 "/usr/include/unistd.h" 3 4 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ; # 1047 "/usr/include/unistd.h" 3 4 extern int brk (void *__addr) __attribute__ ((__nothrow__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__)); # 1068 "/usr/include/unistd.h" 3 4 extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__)); # 1091 "/usr/include/unistd.h" 3 4 extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1122 "/usr/include/unistd.h" 3 4 extern int fdatasync (int __fildes); # 1160 "/usr/include/unistd.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 23 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 24 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 1 3 4 # 9 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 3 4 # 1 "/usr/include/stdint.h" 1 3 4 # 27 "/usr/include/stdint.h" 3 4 # 1 "/usr/include/bits/wchar.h" 1 3 4 # 28 "/usr/include/stdint.h" 2 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/stdint.h" 2 3 4 # 37 "/usr/include/stdint.h" 3 4 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; # 66 "/usr/include/stdint.h" 3 4 typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; # 91 "/usr/include/stdint.h" 3 4 typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 104 "/usr/include/stdint.h" 3 4 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 120 "/usr/include/stdint.h" 3 4 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 135 "/usr/include/stdint.h" 3 4 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 10 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stdint.h" 2 3 4 # 25 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 26 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/uio.h" 1 3 4 # 24 "/usr/include/sys/uio.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 28 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 201 "/usr/include/sys/types.h" 3 4 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 25 "/usr/include/sys/uio.h" 2 3 4 # 1 "/usr/include/bits/uio.h" 1 3 4 # 44 "/usr/include/bits/uio.h" 3 4 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 4 # 40 "/usr/include/sys/uio.h" 3 4 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; # 51 "/usr/include/sys/uio.h" 3 4 extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; # 66 "/usr/include/sys/uio.h" 3 4 extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 78 "/usr/include/sys/uio.h" 3 4 extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 121 "/usr/include/sys/uio.h" 3 4 # 29 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 31 "/usr/include/sys/socket.h" 2 3 4 # 40 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/bits/socket.h" 1 3 4 # 29 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 30 "/usr/include/bits/socket.h" 2 3 4 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 171 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/bits/sockaddr.h" 1 3 4 # 29 "/usr/include/bits/sockaddr.h" 3 4 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 4 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; # 187 "/usr/include/bits/socket.h" 3 4 struct sockaddr_storage { sa_family_t ss_family; char __ss_padding[(128 - (sizeof (unsigned short int)) - sizeof (unsigned long int))]; unsigned long int __ss_align; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 274 "/usr/include/bits/socket.h" 3 4 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 304 "/usr/include/bits/socket.h" 3 4 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 331 "/usr/include/bits/socket.h" 3 4 enum { SCM_RIGHTS = 0x01 }; # 377 "/usr/include/bits/socket.h" 3 4 # 1 "/usr/include/asm/socket.h" 1 3 4 # 1 "/usr/include/asm-generic/socket.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 1 3 4 # 1 "/usr/include/asm-generic/sockios.h" 1 3 4 # 1 "/usr/include/asm/sockios.h" 2 3 4 # 5 "/usr/include/asm-generic/socket.h" 2 3 4 # 1 "/usr/include/asm/socket.h" 2 3 4 # 378 "/usr/include/bits/socket.h" 2 3 4 # 411 "/usr/include/bits/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 4 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 105 "/usr/include/sys/socket.h" 3 4 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); # 129 "/usr/include/sys/socket.h" 3 4 extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); # 166 "/usr/include/sys/socket.h" 3 4 extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); # 214 "/usr/include/sys/socket.h" 3 4 extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 232 "/usr/include/sys/socket.h" 3 4 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 254 "/usr/include/sys/socket.h" 3 4 # 26 "/usr/include/netinet/in.h" 2 3 4 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/bits/in.h" 1 3 4 # 111 "/usr/include/bits/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 40 "/usr/include/netinet/in.h" 2 3 4 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135, }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; # 211 "/usr/include/netinet/in.h" 3 4 struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; # 239 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 376 "/usr/include/netinet/in.h" 3 4 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 388 "/usr/include/netinet/in.h" 2 3 4 # 451 "/usr/include/netinet/in.h" 3 4 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__)); # 576 "/usr/include/netinet/in.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/u/dbrennan/Codes/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: gcc -c -o /tmp/petsc-M4swUz/config.headers/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /tmp/petsc-M4swUz/config.utilities.cacheDetails Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "16384" Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest Executing: /tmp/petsc-M4swUz/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "4" ================================================================================ TEST check_siginfo_t from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /tmp/petsc-M4swUz/config.types Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:13:11: warning: unused variable 'a' [-Wunused-variable] siginfo_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:13:1: error: unknown type name '__int64' __int64 a;; ^ /tmp/petsc-M4swUz/config.types/conftest.c:13:9: warning: unused variable 'a' [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:13:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:13:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:13:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:13:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:13:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.types /tmp/petsc-M4swUz/config.types/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.types/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.types/conftest.c" # 1 "/tmp/petsc-M4swUz/config.types/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.types/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.types/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 26 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 27 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/bits/types.h" 1 3 4 # 28 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/types.h" 2 3 4 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 131 "/usr/include/bits/types.h" 3 4 # 1 "/usr/include/bits/typesizes.h" 1 3 4 # 132 "/usr/include/bits/types.h" 2 3 4 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 4 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 61 "/usr/include/sys/types.h" 3 4 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 99 "/usr/include/sys/types.h" 3 4 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 133 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 74 "/usr/include/time.h" 3 4 typedef __time_t time_t; # 92 "/usr/include/time.h" 3 4 typedef __clockid_t clockid_t; # 104 "/usr/include/time.h" 3 4 typedef __timer_t timer_t; # 134 "/usr/include/sys/types.h" 2 3 4 # 147 "/usr/include/sys/types.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 148 "/usr/include/sys/types.h" 2 3 4 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 195 "/usr/include/sys/types.h" 3 4 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 217 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/endian.h" 1 3 4 # 37 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/endian.h" 1 3 4 # 38 "/usr/include/endian.h" 2 3 4 # 61 "/usr/include/endian.h" 3 4 # 1 "/usr/include/bits/byteswap.h" 1 3 4 # 28 "/usr/include/bits/byteswap.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 29 "/usr/include/bits/byteswap.h" 2 3 4 # 62 "/usr/include/endian.h" 2 3 4 # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 31 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/bits/select.h" 1 3 4 # 23 "/usr/include/bits/select.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/select.h" 2 3 4 # 32 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/sigset.h" 1 3 4 # 24 "/usr/include/bits/sigset.h" 3 4 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 4 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 4 # 120 "/usr/include/time.h" 3 4 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 45 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/bits/time.h" 1 3 4 # 75 "/usr/include/bits/time.h" 3 4 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 4 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; # 67 "/usr/include/sys/select.h" 3 4 typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; # 99 "/usr/include/sys/select.h" 3 4 # 109 "/usr/include/sys/select.h" 3 4 extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); # 121 "/usr/include/sys/select.h" 3 4 extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 1 3 4 # 38 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/sys/sysmacros.h" 3 4 __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned int __attribute__ ((__nothrow__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) unsigned long long int __attribute__ ((__nothrow__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 224 "/usr/include/sys/types.h" 2 3 4 # 236 "/usr/include/sys/types.h" 3 4 typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 271 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 4 # 23 "/usr/include/bits/pthreadtypes.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 4 # 50 "/usr/include/bits/pthreadtypes.h" 3 4 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 76 "/usr/include/bits/pthreadtypes.h" 3 4 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 4 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 4 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 4 # 3 "/tmp/petsc-M4swUz/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:6:17: warning: variable 'x' set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:6:17: warning: variable 'x' set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.types/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/pppl/gcc/4.8.1/include/c++/4.8.1/bits/localefwd.h:40:0, from /usr/pppl/gcc/4.8.1/include/c++/4.8.1/ios:41, from /usr/pppl/gcc/4.8.1/include/c++/4.8.1/istream:38, from /usr/pppl/gcc/4.8.1/include/c++/4.8.1/sstream:38, from /usr/pppl/gcc/4.8.1/include/c++/4.8.1/complex:45, from /tmp/petsc-M4swUz/config.types/conftest.cc:3: /usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++locale.h:52:23: error: 'uselocale' was not declared in this scope extern "C" __typeof(uselocale) __uselocale; ^ /usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++locale.h:52:45: error: invalid type in declaration before ';' token extern "C" __typeof(uselocale) __uselocale; ^ /usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++locale.h: In function 'int std::__convert_from_v(__locale_struct* const&, char*, int, const char*, ...)': /usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++locale.h:75:53: error: '__gnu_cxx::__uselocale' cannot be used as a function __c_locale __old = __gnu_cxx::__uselocale(__cloc); ^ /usr/pppl/gcc/4.8.1/include/c++/4.8.1/x86_64-unknown-linux-gnu/bits/c++locale.h:100:33: error: '__gnu_cxx::__uselocale' cannot be used as a function __gnu_cxx::__uselocale(__old); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Compile failed inside link Popping language Cxx ================================================================================ TEST checkConst from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:30:9: warning: 't' is used uninitialized in this function [-Wuninitialized] *t++ = 0; ^ /tmp/petsc-M4swUz/config.types/conftest.c:46:25: warning: 'b' is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.types/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.types/conftest.c:11:3: error: unknown type name 'not' not big endian ^ /tmp/petsc-M4swUz/config.types/conftest.c:11:11: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian' not big endian ^ Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.types/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.types/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.types/conftest Executing: /tmp/petsc-M4swUz/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/u/dbrennan/Codes/petsc/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:356) Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Popping language C Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.types/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" Popping language Cxx ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/u/dbrennan/Codes/petsc/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST check from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:159) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:159) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:159) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:159) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:159) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:159) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:159) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:159) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /usr/bin/ld: cannot find -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:264) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:264) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x25): undefined reference to `sin' conftest.c:(.text+0x55): undefined reference to `floor' conftest.c:(.text+0x85): undefined reference to `log10' conftest.c:(.text+0xb9): undefined reference to `pow' collect2: error: ld returned 1 exit status Popping language C Checking for functions [sin floor log10 pow] in library ['m'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include double sin(double); static void _check_sin() { double x,y; scanf("%lf",&x); y = sin(x); printf("%f",y); ; } #include double floor(double); static void _check_floor() { double x,y; scanf("%lf",&x); y = floor(x); printf("%f",y); ; } #include double log10(double); static void _check_log10() { double x,y; scanf("%lf",&x); y = log10(x); printf("%f",y); ; } #include double pow(double, double); static void _check_pow() { double x,y; scanf("%lf",&x); y = pow(x,x); printf("%f",y); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -lm -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C CheckMath: using math library ['libm.a'] ================================================================================ TEST checkMathErf from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:283) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:283) Check for erf() in libm, the math library Checking for functions [erf] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.libraries/conftest.c: In function '_check_erf': /tmp/petsc-M4swUz/config.libraries/conftest.c:5:74: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_erf() { double (*checkErf)(double) = erf;double x = 0,y; y = (*checkErf)(x); } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -lm -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:292) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:292) Check for tgamma() in libm, the math library Checking for functions [tgamma] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.libraries/conftest.c: In function '_check_tgamma': /tmp/petsc-M4swUz/config.libraries/conftest.c:5:63: error: 'tgamma' undeclared (first use in this function) static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ /tmp/petsc-M4swUz/config.libraries/conftest.c:5:63: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-M4swUz/config.libraries/conftest.c:5:83: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_tgamma() { double (*checkTgamma)(double) = tgamma;double x = 0,y; y = (*checkTgamma)(x); } int main() { _check_tgamma();; return 0; } Compile failed inside link Popping language C Warning: tgamma() not found ================================================================================ TEST checkMathFenv from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:301) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:301) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -lm -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_LIBM" to "1" Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:309) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:309) Check for log2() in libm, the math library Checking for functions [log2] in library ['libm.a'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.libraries/conftest.c: In function '_check_log2': /tmp/petsc-M4swUz/config.libraries/conftest.c:5:59: error: 'log2' undeclared (first use in this function) static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ /tmp/petsc-M4swUz/config.libraries/conftest.c:5:59: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-M4swUz/config.libraries/conftest.c:5:81: warning: unused variable 'y' [-Wunused-variable] static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_log2() { double (*checkLog2)(double) = log2; double x = 2.5, y = (*checkLog2)(x); } int main() { _check_log2();; return 0; } Compile failed inside link Popping language C Warning: log2() not found ================================================================================ TEST checkRealtime from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:318) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:318) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xd): undefined reference to `clock_gettime' collect2: error: ld returned 1 exit status Popping language C Checking for functions [clock_gettime] in library ['rt'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -lrt -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_LIBRT" to "1" Popping language C Using librt for the realtime library ================================================================================ TEST checkDynamic from config.libraries(/u/dbrennan/Codes/petsc/config/BuildSystem/config/libraries.py:334) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:334) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -ldl -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 23 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 24 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 1 3 4 # 212 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include/stddef.h" 3 4 typedef long unsigned int size_t; # 26 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/bits/dlfcn.h" 1 3 4 # 29 "/usr/include/dlfcn.h" 2 3 4 # 53 "/usr/include/dlfcn.h" 3 4 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 83 "/usr/include/dlfcn.h" 3 4 extern char *dlerror (void) __attribute__ ((__nothrow__)); # 189 "/usr/include/dlfcn.h" 3 4 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/u/dbrennan/Codes/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Executing: gcc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `bgl_perfctr_void' collect2: error: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `ADIOI_BGL_Open' collect2: error: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/u/dbrennan/Codes/petsc/config/PETSc/options/libraryOptions.py:91) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:91) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_F" to "integer2" ================================================================================ TEST configureCPURelax from config.atomics(/u/dbrennan/Codes/petsc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /tmp/petsc-M4swUz/config.atomics Executing: gcc -c -o /tmp/petsc-M4swUz/config.atomics/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/u/dbrennan/Codes/petsc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: gcc -c -o /tmp/petsc-M4swUz/config.atomics/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: gcc -c -o /tmp/petsc-M4swUz/config.atomics/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: gcc -c -o /tmp/petsc-M4swUz/config.atomics/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST checkMemcmp from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /tmp/petsc-M4swUz/config.functions Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Testing executable /tmp/petsc-M4swUz/config.functions/conftest to see if it can be run Executing: /tmp/petsc-M4swUz/config.functions/conftest Executing: /tmp/petsc-M4swUz/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 11 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 67 "/usr/include/linux/kernel.h" 3 4 struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 4 # 22 "/usr/include/sys/sysinfo.h" 3 4 # 1 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 1 3 4 # 338 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 373 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 374 "/usr/include/sys/cdefs.h" 2 3 4 # 339 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 361 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 3 4 # 1 "/usr/include/gnu/stubs.h" 1 3 4 # 1 "/usr/include/bits/wordsize.h" 1 3 4 # 5 "/usr/include/gnu/stubs.h" 2 3 4 # 1 "/usr/include/gnu/stubs-64.h" 1 3 4 # 10 "/usr/include/gnu/stubs.h" 2 3 4 # 362 "/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1/include-fixed/features.h" 2 3 4 # 23 "/usr/include/sys/sysinfo.h" 2 3 4 # 1 "/usr/include/linux/kernel.h" 1 3 4 # 11 "/usr/include/linux/kernel.h" 3 4 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; # 67 "/usr/include/linux/kernel.h" 3 4 struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 26 "/usr/include/sys/sysinfo.h" 2 3 4 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__)); extern int get_nprocs (void) __attribute__ ((__nothrow__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__)); # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory #include ^compilation terminated.: Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:13:4: error: #error "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ /tmp/petsc-M4swUz/config.functions/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.functions/conftest.c:17:1: warning: implicit declaration of function 'sysinfo' [-Wimplicit-function-declaration] char buf[10]; long count=10; sysinfo(1, buf, count); ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'vprintf' [enabled by default] char vprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_VPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl ================================================================================ TEST checkVFPrintf from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'vfprintf' [enabled by default] char vfprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_VFPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.functions/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.functions/conftest.c:6:1: warning: implicit declaration of function '_vsnprintf' [-Wimplicit-function-declaration] _vsnprintf(0,0,0,0); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { _vsnprintf(0,0,0,0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0x1e): undefined reference to `_vsnprintf' collect2: error: ld returned 1 exit status Checking for functions [vsnprintf] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'vsnprintf' [enabled by default] char vsnprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl ================================================================================ TEST checkNanosleep from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:206) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:206) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:182) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:182) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-M4swUz/config.functions/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:192) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:192) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /tmp/petsc-M4swUz/config.functions/conftest.c:6:5: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:198) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:198) Checks whether the variable argument list functionality is working Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/u/dbrennan/Codes/petsc/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _mkdir time sysctlbyname stricmp] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:16:6: warning: conflicting types for built-in function 'snprintf' [enabled by default] char snprintf(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'bzero' [enabled by default] char bzero(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:36:6: warning: conflicting types for built-in function 'fork' [enabled by default] char fork(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:48:6: warning: conflicting types for built-in function 'strcasecmp' [enabled by default] char strcasecmp(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:52:6: warning: conflicting types for built-in function 'memmove' [enabled by default] char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _mkdir(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': /tmp/petsc-M4swUz/config.functions/conftest.c:119: warning: the `getwd' function is dangerous and should not be used. /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0x1e): undefined reference to `_sleep' conftest.c:(.text+0x50): undefined reference to `_getcwd' conftest.c:(.text+0x6e): undefined reference to `_lseek' conftest.c:(.text+0x82): undefined reference to `_access' conftest.c:(.text+0xd2): undefined reference to `_snprintf' conftest.c:(.text+0x104): undefined reference to `sbreak' conftest.c:(.text+0x14a): undefined reference to `_set_output_format' conftest.c:(.text+0x154): undefined reference to `PXFGETARG' conftest.c:(.text+0x1c2): undefined reference to `_mkdir' conftest.c:(.text+0x1d6): undefined reference to `sysctlbyname' conftest.c:(.text+0x1e0): undefined reference to `stricmp' collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:17:6: warning: conflicting types for built-in function 'bzero' [enabled by default] char bzero(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:26:6: warning: conflicting types for built-in function 'fork' [enabled by default] char fork(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'strcasecmp' [enabled by default] char strcasecmp(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:23:6: warning: conflicting types for built-in function 'memmove' [enabled by default] char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_sleep' collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'snprintf' [enabled by default] char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_getcwd' collect2: error: ld returned 1 exit status Checking for functions [getwd] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': /tmp/petsc-M4swUz/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_lseek' collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_access' collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_snprintf' collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `sbreak' collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_set_output_format' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [_mkdir] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_mkdir' collect2: error: ld returned 1 exit status Checking for functions [sysctlbyname] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `sysctlbyname' collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `stricmp' collect2: error: ld returned 1 exit status ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language C Popping language C Checking for functions [get_command_argument] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument(); static void _check_get_command_argument() { get_command_argument(); } int main() { _check_get_command_argument();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `get_command_argument' collect2: error: ld returned 1 exit status Popping language C Checking for functions [getarg] in library [''] [] Pushing language C Executing: gcc -c -o /tmp/petsc-M4swUz/config.libraries/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg(); static void _check_getarg() { getarg(); } int main() { _check_getarg();; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/config.libraries/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.libraries/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.libraries/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `getarg' collect2: error: ld returned 1 exit status Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Checking for functions [ipxfargc_] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `ipxfargc_' collect2: error: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `f90_unix_MP_iargc' collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `PXFGETARG' collect2: error: ld returned 1 exit status Checking for functions [iargc_] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `iargc_' collect2: error: ld returned 1 exit status Checking for functions [GETARG@16] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.c:13:12: error: stray '@' in program char GETARG@16(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:13:13: error: expected '=', ',', ';', 'asm' or '__attribute__' before numeric constant char GETARG@16(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.functions/conftest.c:21:27: error: missing ')' after "defined" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-M4swUz/config.functions/conftest.c:21:28: error: missing binary operator before token "16" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /tmp/petsc-M4swUz/config.functions/conftest.c:24:7: error: stray '@' in program GETARG@16(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:24:1: error: 'GETARG' undeclared (first use in this function) GETARG@16(); ^ /tmp/petsc-M4swUz/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /tmp/petsc-M4swUz/config.functions/conftest.c:24:8: error: expected ';' before numeric constant GETARG@16(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) GETARG@16_will_always_fail_with_ENOSYS(); #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: gcc -c -o /tmp/petsc-M4swUz/config.functions/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Executing: gcc -o /tmp/petsc-M4swUz/config.functions/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.functions/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/config.functions/conftest.o: In function `main': conftest.c:(.text+0xa): undefined reference to `_gfortran_iargc' collect2: error: ld returned 1 exit status ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /tmp/petsc-M4swUz/config.utilities.featureTestMacros Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMissingDefines from config.utilities.missing(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /tmp/petsc-M4swUz/config.utilities.missing Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.missing -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/config.utilities.missing/conftest.c: In function 'main': /tmp/petsc-M4swUz/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:110) Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-M4swUz/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:135) Executing: gcc -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: g++ -c -o /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O -fPIC /tmp/petsc-M4swUz/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: g++ -o /tmp/petsc-M4swUz/config.utilities.missing/conftest -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/config.utilities.missing/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Popping language Cxx ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory #include ^compilation terminated.: Checking for header: fpxcp.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory #include ^compilation terminated.: Checking for header: floatingpoint.h Executing: gcc -E -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.headers /tmp/petsc-M4swUz/config.headers/conftest.c stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "" # 1 "/tmp/petsc-M4swUz/config.headers/conftest.c" # 1 "/tmp/petsc-M4swUz/config.headers/confdefs.h" 1 # 2 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2 # 1 "/tmp/petsc-M4swUz/config.headers/conffix.h" 1 # 3 "/tmp/petsc-M4swUz/config.headers/conftest.c" 2stderr: /tmp/petsc-M4swUz/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^ compilation terminated. : Preprocess stderr after filtering:/tmp/petsc-M4swUz/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory #include ^compilation terminated.: ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/u/dbrennan/Codes/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/u/dbrennan/Codes/petsc/config/PETSc/options/scalarTypes.py:37) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language C All intermediate test results are stored in /tmp/petsc-M4swUz/PETSc.options.scalarTypes Executing: gcc -c -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -I/tmp/petsc-M4swUz/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c:6:1: warning: implicit declaration of function 'isnormal' [-Wimplicit-function-declaration] double b = 2.0; int a = isnormal(b); ^ /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnormal(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o: In function `main': conftest.c:(.text+0x12): undefined reference to `isnormal' collect2: error: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -I/tmp/petsc-M4swUz/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_ISNAN" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -I/tmp/petsc-M4swUz/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c:6:21: warning: unused variable 'a' [-Wunused-variable] double b = 2.0; int a = isinf(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Defined "HAVE_ISINF" to "1" Executing: gcc -c -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -I/tmp/petsc-M4swUz/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c:6:1: warning: implicit declaration of function '_isnan' [-Wimplicit-function-declaration] double b = 2.0;int a = _isnan(b); ^ /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c:6:20: warning: unused variable 'a' [-Wunused-variable] double b = 2.0;int a = _isnan(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o: In function `main': conftest.c:(.text+0x12): undefined reference to `_isnan' collect2: error: ld returned 1 exit status Executing: gcc -c -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -I/tmp/petsc-M4swUz/config.utilities.closure -I/tmp/petsc-M4swUz/config.compilers -I/tmp/petsc-M4swUz/config.setCompilers -I/tmp/petsc-M4swUz/config.headers -I/tmp/petsc-M4swUz/config.utilities.cacheDetails -I/tmp/petsc-M4swUz/config.types -I/tmp/petsc-M4swUz/config.atomics -I/tmp/petsc-M4swUz/config.libraries -I/tmp/petsc-M4swUz/config.functions -I/tmp/petsc-M4swUz/config.utilities.featureTestMacros -I/tmp/petsc-M4swUz/config.utilities.missing -I/tmp/petsc-M4swUz/PETSc.options.scalarTypes -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c Possible ERROR while running compiler: stderr: /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c: In function 'main': /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c:6:1: warning: implicit declaration of function '_finite' [-Wimplicit-function-declaration] double b = 2.0;int a = _finite(b); ^ /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.c:6:20: warning: unused variable 'a' [-Wunused-variable] double b = 2.0;int a = _finite(b); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Pushing language C Popping language C Executing: gcc -o /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector -fvisibility=hidden -g -O /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -L/usr/pppl/gcc/4.8.1/lib/gcc/x86_64-unknown-linux-gnu/4.8.1 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib64 -L/usr/pppl/gcc/4.8.1/lib64 -Wl,-rpath,/usr/pppl/gcc/4.8.1/lib -L/usr/pppl/gcc/4.8.1/lib -ldl -lgcc_s -ldl Possible ERROR while running linker: exit code 256 stderr: /tmp/petsc-M4swUz/PETSc.options.scalarTypes/conftest.o: In function `main': conftest.c:(.text+0x12): undefined reference to `_finite' collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/u/dbrennan/Codes/petsc/config/PETSc/options/scalarTypes.py:77) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:77) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double ================================================================================ TEST configureMkdir from config.programs(/u/dbrennan/Codes/petsc/config/BuildSystem/config/programs.py:23) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:23) Make sure we can have mkdir automatically make intermediate directories Checking for program /p/fenics/fenics/local/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/mkdir...not found Checking for program /p/fenics/fenics/local/bin/mkdir...not found Checking for program /usr/pppl/cmake/3.6.2/bin/mkdir...not found Checking for program /usr/pppl/swig/3.0.5/bin/mkdir...not found Checking for program /usr/pppl/git/1.8.0.2/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/mkdir...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/mkdir...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/mkdir...not found Checking for program /usr/pppl/gcc/4.8.1/bin/mkdir...not found Checking for program /usr/pppl/bison/2.7/bin/mkdir...not found Checking for program /usr/pppl/python/2.7.2/bin/mkdir...not found Checking for program /usr/pppl/subversion/1.8.11/bin/mkdir...not found Checking for program /usr/lib64/qt-3.3/bin/mkdir...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/mkdir...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/mkdir...not found Checking for program /usr/pppl/slurm/15.08.8/bin/mkdir...not found Checking for program /usr/pppl/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/u/dbrennan/Codes/petsc/config/BuildSystem/config/programs.py:45) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:45) Check for autoreconf Checking for program /p/fenics/fenics/local/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/autoreconf...not found Checking for program /p/fenics/fenics/local/bin/autoreconf...not found Checking for program /usr/pppl/cmake/3.6.2/bin/autoreconf...not found Checking for program /usr/pppl/swig/3.0.5/bin/autoreconf...not found Checking for program /usr/pppl/git/1.8.0.2/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/autoreconf...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/autoreconf...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/autoreconf...not found Checking for program /usr/pppl/gcc/4.8.1/bin/autoreconf...not found Checking for program /usr/pppl/bison/2.7/bin/autoreconf...not found Checking for program /usr/pppl/python/2.7.2/bin/autoreconf...not found Checking for program /usr/pppl/subversion/1.8.11/bin/autoreconf...not found Checking for program /usr/lib64/qt-3.3/bin/autoreconf...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/autoreconf...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/autoreconf...not found Checking for program /usr/pppl/slurm/15.08.8/bin/autoreconf...not found Checking for program /usr/pppl/bin/autoreconf...not found Checking for program /bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /tmp/petsc-M4swUz/config.programs Executing: cd /tmp/petsc-M4swUz/config.programs/autoconfdir&&/usr/bin/autoreconf autoreconf test successful! Checking for program /p/fenics/fenics/local/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/libtoolize...not found Checking for program /p/fenics/fenics/local/bin/libtoolize...not found Checking for program /usr/pppl/cmake/3.6.2/bin/libtoolize...not found Checking for program /usr/pppl/swig/3.0.5/bin/libtoolize...not found Checking for program /usr/pppl/git/1.8.0.2/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/libtoolize...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/libtoolize...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/libtoolize...not found Checking for program /usr/pppl/gcc/4.8.1/bin/libtoolize...not found Checking for program /usr/pppl/bison/2.7/bin/libtoolize...not found Checking for program /usr/pppl/python/2.7.2/bin/libtoolize...not found Checking for program /usr/pppl/subversion/1.8.11/bin/libtoolize...not found Checking for program /usr/lib64/qt-3.3/bin/libtoolize...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/libtoolize...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/libtoolize...not found Checking for program /usr/pppl/slurm/15.08.8/bin/libtoolize...not found Checking for program /usr/pppl/bin/libtoolize...not found Checking for program /bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/u/dbrennan/Codes/petsc/config/BuildSystem/config/programs.py:72) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:72) Check for the programs needed to build and run PETSc Checking for program /p/fenics/fenics/local/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/sh...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/sh...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/sh...not found Checking for program /p/fenics/fenics/local/bin/sh...not found Checking for program /usr/pppl/cmake/3.6.2/bin/sh...not found Checking for program /usr/pppl/swig/3.0.5/bin/sh...not found Checking for program /usr/pppl/git/1.8.0.2/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/sh...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/sh...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/sh...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/sh...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/sh...not found Checking for program /usr/pppl/gcc/4.8.1/bin/sh...not found Checking for program /usr/pppl/bison/2.7/bin/sh...not found Checking for program /usr/pppl/python/2.7.2/bin/sh...not found Checking for program /usr/pppl/subversion/1.8.11/bin/sh...not found Checking for program /usr/lib64/qt-3.3/bin/sh...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/sh...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/sh...not found Checking for program /usr/pppl/slurm/15.08.8/bin/sh...not found Checking for program /usr/pppl/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /p/fenics/fenics/local/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/sed...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/sed...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/sed...not found Checking for program /p/fenics/fenics/local/bin/sed...not found Checking for program /usr/pppl/cmake/3.6.2/bin/sed...not found Checking for program /usr/pppl/swig/3.0.5/bin/sed...not found Checking for program /usr/pppl/git/1.8.0.2/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/sed...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/sed...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/sed...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/sed...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/sed...not found Checking for program /usr/pppl/gcc/4.8.1/bin/sed...not found Checking for program /usr/pppl/bison/2.7/bin/sed...not found Checking for program /usr/pppl/python/2.7.2/bin/sed...not found Checking for program /usr/pppl/subversion/1.8.11/bin/sed...not found Checking for program /usr/lib64/qt-3.3/bin/sed...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/sed...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/sed...not found Checking for program /usr/pppl/slurm/15.08.8/bin/sed...not found Checking for program /usr/pppl/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/tmp/petsc-M4swUz/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /p/fenics/fenics/local/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/mv...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/mv...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/mv...not found Checking for program /p/fenics/fenics/local/bin/mv...not found Checking for program /usr/pppl/cmake/3.6.2/bin/mv...not found Checking for program /usr/pppl/swig/3.0.5/bin/mv...not found Checking for program /usr/pppl/git/1.8.0.2/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/mv...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/mv...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/mv...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/mv...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/mv...not found Checking for program /usr/pppl/gcc/4.8.1/bin/mv...not found Checking for program /usr/pppl/bison/2.7/bin/mv...not found Checking for program /usr/pppl/python/2.7.2/bin/mv...not found Checking for program /usr/pppl/subversion/1.8.11/bin/mv...not found Checking for program /usr/lib64/qt-3.3/bin/mv...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/mv...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/mv...not found Checking for program /usr/pppl/slurm/15.08.8/bin/mv...not found Checking for program /usr/pppl/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /p/fenics/fenics/local/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/cp...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/cp...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/cp...not found Checking for program /p/fenics/fenics/local/bin/cp...not found Checking for program /usr/pppl/cmake/3.6.2/bin/cp...not found Checking for program /usr/pppl/swig/3.0.5/bin/cp...not found Checking for program /usr/pppl/git/1.8.0.2/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/cp...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/cp...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/cp...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/cp...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/cp...not found Checking for program /usr/pppl/gcc/4.8.1/bin/cp...not found Checking for program /usr/pppl/bison/2.7/bin/cp...not found Checking for program /usr/pppl/python/2.7.2/bin/cp...not found Checking for program /usr/pppl/subversion/1.8.11/bin/cp...not found Checking for program /usr/lib64/qt-3.3/bin/cp...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/cp...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/cp...not found Checking for program /usr/pppl/slurm/15.08.8/bin/cp...not found Checking for program /usr/pppl/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /p/fenics/fenics/local/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/grep...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/grep...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/grep...not found Checking for program /p/fenics/fenics/local/bin/grep...not found Checking for program /usr/pppl/cmake/3.6.2/bin/grep...not found Checking for program /usr/pppl/swig/3.0.5/bin/grep...not found Checking for program /usr/pppl/git/1.8.0.2/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/grep...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/grep...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/grep...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/grep...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/grep...not found Checking for program /usr/pppl/gcc/4.8.1/bin/grep...not found Checking for program /usr/pppl/bison/2.7/bin/grep...not found Checking for program /usr/pppl/python/2.7.2/bin/grep...not found Checking for program /usr/pppl/subversion/1.8.11/bin/grep...not found Checking for program /usr/lib64/qt-3.3/bin/grep...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/grep...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/grep...not found Checking for program /usr/pppl/slurm/15.08.8/bin/grep...not found Checking for program /usr/pppl/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /p/fenics/fenics/local/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/rm...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/rm...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/rm...not found Checking for program /p/fenics/fenics/local/bin/rm...not found Checking for program /usr/pppl/cmake/3.6.2/bin/rm...not found Checking for program /usr/pppl/swig/3.0.5/bin/rm...not found Checking for program /usr/pppl/git/1.8.0.2/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/rm...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/rm...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/rm...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/rm...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/rm...not found Checking for program /usr/pppl/gcc/4.8.1/bin/rm...not found Checking for program /usr/pppl/bison/2.7/bin/rm...not found Checking for program /usr/pppl/python/2.7.2/bin/rm...not found Checking for program /usr/pppl/subversion/1.8.11/bin/rm...not found Checking for program /usr/lib64/qt-3.3/bin/rm...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/rm...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/rm...not found Checking for program /usr/pppl/slurm/15.08.8/bin/rm...not found Checking for program /usr/pppl/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /p/fenics/fenics/local/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/diff...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/diff...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/diff...not found Checking for program /p/fenics/fenics/local/bin/diff...not found Checking for program /usr/pppl/cmake/3.6.2/bin/diff...not found Checking for program /usr/pppl/swig/3.0.5/bin/diff...not found Checking for program /usr/pppl/git/1.8.0.2/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/diff...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/diff...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/diff...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/diff...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/diff...not found Checking for program /usr/pppl/gcc/4.8.1/bin/diff...not found Checking for program /usr/pppl/bison/2.7/bin/diff...not found Checking for program /usr/pppl/python/2.7.2/bin/diff...not found Checking for program /usr/pppl/subversion/1.8.11/bin/diff...not found Checking for program /usr/lib64/qt-3.3/bin/diff...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/diff...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/diff...not found Checking for program /usr/pppl/slurm/15.08.8/bin/diff...not found Checking for program /usr/pppl/bin/diff...not found Checking for program /bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/tmp/petsc-M4swUz/config.programs/diff1" "/tmp/petsc-M4swUz/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /u/dbrennan/ps...not found Checking for program /u/dbrennan/Codes/petsc/bin/win32fe/ps...not found Checking for program /p/fenics/fenics/local/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gzip...not found Checking for program /p/fenics/fenics/local/bin/gzip...not found Checking for program /usr/pppl/cmake/3.6.2/bin/gzip...not found Checking for program /usr/pppl/swig/3.0.5/bin/gzip...not found Checking for program /usr/pppl/git/1.8.0.2/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gzip...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gzip...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/gzip...not found Checking for program /usr/pppl/gcc/4.8.1/bin/gzip...not found Checking for program /usr/pppl/bison/2.7/bin/gzip...not found Checking for program /usr/pppl/python/2.7.2/bin/gzip...not found Checking for program /usr/pppl/subversion/1.8.11/bin/gzip...not found Checking for program /usr/lib64/qt-3.3/bin/gzip...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/gzip...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/gzip...not found Checking for program /usr/pppl/slurm/15.08.8/bin/gzip...not found Checking for program /usr/pppl/bin/gzip...not found Checking for program /bin/gzip...found Defined make macro "GZIP" to "/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/pppl/python/2.7.2/bin/python" Checking for program /p/fenics/fenics/local/bin/m4...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/m4...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/m4...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/m4...found Defined make macro "M4" to "/p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/m4" ================================================================================ TEST configureMake from config.packages.make(/u/dbrennan/Codes/petsc/config/BuildSystem/config/packages/make.py:82) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:82) Check for user specified make - or gmake, make Checking for program /p/fenics/fenics/local/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gmake...not found Checking for program /p/fenics/fenics/local/bin/gmake...not found Checking for program /usr/pppl/cmake/3.6.2/bin/gmake...not found Checking for program /usr/pppl/swig/3.0.5/bin/gmake...not found Checking for program /usr/pppl/git/1.8.0.2/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall/nimdevel/scripts/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/autotools-lt-2.4.2/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/xz-5.0.3-ser/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/hdf5-1.8.13-ser/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/cmake-3.4.1-ser/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/python/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/texlive/bin/x86_64-linux/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-build/nimdevel/ser/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall-tarball/bin/gmake...not found Checking for program /p/nimrod/dbrennan/nimall/xdraw/gmake...not found Checking for program /usr/pppl/gcc/4.6-pkgs/openmpi-1.4.3/bin/gmake...not found Checking for program /usr/pppl/gcc/4.8.1/bin/gmake...not found Checking for program /usr/pppl/bison/2.7/bin/gmake...not found Checking for program /usr/pppl/python/2.7.2/bin/gmake...not found Checking for program /usr/pppl/subversion/1.8.11/bin/gmake...not found Checking for program /usr/lib64/qt-3.3/bin/gmake...not found Checking for program /usr/pppl/ppplcluster/1.2/bin/gmake...not found Checking for program /usr/pppl/ppplcluster/1.2/sbin/gmake...not found Checking for program /usr/pppl/slurm/15.08.8/bin/gmake...not found Checking for program /usr/pppl/bin/gmake...not found Checking for program /bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Executing: /usr/bin/gmake --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-redhat-linux-gnu ================================================================================ TEST configureCheckGNUMake from config.packages.make(/u/dbrennan/Codes/petsc/config/BuildSystem/config/packages/make.py:119) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:119) Setup other GNU make stuff Executing: /usr/bin/gmake --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-redhat-linux-gnu Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/u/dbrennan/Codes/petsc/config/BuildSystem/config/packages/make.py:157) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:157) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 8 cores: using make_np = 7 Defined make macro "MAKE_NP" to "7" Defined make macro "NPMAX" to "8" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/u/dbrennan/Codes/petsc/config/BuildSystem/config/package.py:796) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:796) Called if --with-packagename=0; does nothing by default Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Executing: gcc -V Pushing language C ================================================================================ TEST checkDependencies from config.packages.MPICH(/u/dbrennan/Codes/petsc/config/BuildSystem/config/package.py:719) TESTING: checkDependencies from config.packages.MPICH(config/BuildSystem/config/package.py:719) ================================================================================ TEST configureLibrary from config.packages.MPICH(/u/dbrennan/Codes/petsc/config/BuildSystem/config/package.py:744) TESTING: configureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:744) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional MPICH Executing: uname -s stdout: Linux Looking for MPICH at git.mpich, hg.mpich or a directory starting with ['mpich'] Found a copy of MPICH in mpich-3.3a2 Pushing language C All intermediate test results are stored in /tmp/petsc-M4swUz/config.packages.MPICH Popping language C Pushing language Cxx Popping language Cxx Removing configure arguments ['--disable-f90', '--enable-f90'] Removing configure arguments [] Have to rebuild MPICH, /u/dbrennan/Codes/petsc/arch-linux-gnu-O/externalpackages/mpich-3.3a2/mpich.petscconf != /u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib/petsc/conf/pkg.conf.mpich =============================================================================== Running configure on MPICH; this may take several minutes =============================================================================== Executing: cd /u/dbrennan/Codes/petsc/arch-linux-gnu-O/externalpackages/mpich-3.3a2 && ./configure --prefix=/u/dbrennan/Codes/petsc/arch-linux-gnu-O MAKE=/usr/bin/gmake --libdir=/u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib CC="gcc" CFLAGS="-fPIC -fstack-protector -g -O" AR="/usr/bin/ar" ARFLAGS="cr" CXX="g++" CXXFLAGS="-fstack-protector -g -O -fPIC" --disable-fortran --disable-fc --disable-f77 --enable-shared --with-device=ch3:sock --with-pm=hydra --enable-g=meminit stdout: Configuring MPICH version 3.3a2 with '--prefix=/u/dbrennan/Codes/petsc/arch-linux-gnu-O' 'MAKE=/usr/bin/gmake' '--libdir=/u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC' '--disable-fortran' '--disable-fc' '--disable-f77' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' Running on system: Linux sunfire06.pppl.gov 2.6.32-696.1.1.el6.x86_64 #1 SMP Tue Apr 11 17:13:24 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/gmake sets $(MAKE)... yes checking for style of include used by /usr/bin/gmake... GNU checking whether /usr/bin/gmake supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/gmake supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... no checking whether no accepts -g... no checking whether we are using the GNU Fortran 77 compiler... no checking whether no accepts -g... no configure: RUNNING PREREQ FOR ch3:sock checking for strerror... yes checking for poll... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for stdlib.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for unistd.h... (cached) yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking whether socklen_t is defined (in sys/socket.h if present)... yes checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no Parsing Arguments for OFI Netmod configure: ===== configuring src/mpl ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/u/dbrennan/Codes/petsc/arch-linux-gnu-O' --disable-versioning --enable-embedded 'MAKE=/usr/bin/gmake' '--libdir=/u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC ' '--disable-fortran' '--disable-fc' '--disable-f77' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/gmake sets $(MAKE)... yes checking whether /usr/bin/gmake supports nested variables... yes checking for style of include used by /usr/bin/gmake... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/gmake supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking backtrace.h usability... no checking backtrace.h presence... no checking for backtrace.h... no checking libunwind.h usability... no checking libunwind.h presence... no checking for libunwind.h... no checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes configure: Timer type selected is GETTIMEOFDAY checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... no checking whether pthread_mutexattr_settype needs a declaration... yes checking for thread local storage specifier... __thread checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for backtrace_symbols... yes checking for backtrace_create_state in -lbacktrace... no checking for unw_backtrace in -lunwind... no checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: include/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines config.status: include/mplconfig.h is unchanged configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/u/dbrennan/Codes/petsc/arch-linux-gnu-O' --disable-versioning --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/gmake' '--libdir=/u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC ' '--disable-fortran' '--disable-fc' '--disable-f77' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/gmake sets $(MAKE)... yes checking whether /usr/bin/gmake supports nested variables... yes checking for style of include used by /usr/bin/gmake... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/gmake supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: src/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines config.status: src/opa_config.h is unchanged configure: ===== done with src/openpa configure ===== sourcing /u/dbrennan/Codes/petsc/arch-linux-gnu-O/externalpackages/mpich-3.3a2/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether TRUE has been defined... no checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... no checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... no checking whether the compiler implements the namespace std... no checking whether available... no checking for GNU g++ version... unknown checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... /usr/bin/ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of bool... 0 **** Configure header /tmp/petsc-M4swUz/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_INTTYPES_H #define PETSC_HAVE_INTTYPES_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBRT #define PETSC_HAVE_LIBRT 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-linux-gnu-O" #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_USE_VISIBILITY_C #define PETSC_USE_VISIBILITY_C 1 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_VISIBILITY_CXX #define PETSC_USE_VISIBILITY_CXX 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2017-10-03 14:12:35 -0500" #endif #ifndef PETSC_VERSION_BRANCH_GIT #define PETSC_VERSION_BRANCH_GIT "master" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "v3.8-38-g4f3f43d" #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_MALLOC_COALESCED #define PETSC_USE_MALLOC_COALESCED 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_F #define PETSC_IS_COLOR_VALUE_TYPE_F integer2 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC__DEFAULT_SOURCE #define PETSC__DEFAULT_SOURCE 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 16384 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 4 #endif #endif **** C specific Configure header /tmp/petsc-M4swUz/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running configure on MPICH: Could not execute "cd /u/dbrennan/Codes/petsc/arch-linux-gnu-O/externalpackages/mpich-3.3a2 && ./configure --prefix=/u/dbrennan/Codes/petsc/arch-linux-gnu-O MAKE=/usr/bin/gmake --libdir=/u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib CC="gcc" CFLAGS="-fPIC -fstack-protector -g -O" AR="/usr/bin/ar" ARFLAGS="cr" CXX="g++" CXXFLAGS="-fstack-protector -g -O -fPIC" --disable-fortran --disable-fc --disable-f77 --enable-shared --with-device=ch3:sock --with-pm=hydra --enable-g=meminit": Configuring MPICH version 3.3a2 with '--prefix=/u/dbrennan/Codes/petsc/arch-linux-gnu-O' 'MAKE=/usr/bin/gmake' '--libdir=/u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC' '--disable-fortran' '--disable-fc' '--disable-f77' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' Running on system: Linux sunfire06.pppl.gov 2.6.32-696.1.1.el6.x86_64 #1 SMP Tue Apr 11 17:13:24 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/gmake sets $(MAKE)... yes checking for style of include used by /usr/bin/gmake... GNU checking whether /usr/bin/gmake supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/gmake supports nested variables... (cached) yes checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran compiler... no checking whether no accepts -g... no checking whether we are using the GNU Fortran 77 compiler... no checking whether no accepts -g... no configure: RUNNING PREREQ FOR ch3:sock checking for strerror... yes checking for poll... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking for stdlib.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/poll.h usability... yes checking sys/poll.h presence... yes checking for sys/poll.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for unistd.h... (cached) yes checking if struct poll is defined... yes checking if a simple program using poll() can be compiled... yes checking whether bit fields work in ip.h... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking whether socklen_t is defined (in sys/socket.h if present)... yes checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no Parsing Arguments for OFI Netmod configure: ===== configuring src/mpl ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/u/dbrennan/Codes/petsc/arch-linux-gnu-O' --disable-versioning --enable-embedded 'MAKE=/usr/bin/gmake' '--libdir=/u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC ' '--disable-fortran' '--disable-fc' '--disable-f77' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/gmake sets $(MAKE)... yes checking whether /usr/bin/gmake supports nested variables... yes checking for style of include used by /usr/bin/gmake... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/gmake supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking backtrace.h usability... no checking backtrace.h presence... no checking for backtrace.h... no checking libunwind.h usability... no checking libunwind.h presence... no checking for libunwind.h... no checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes configure: Timer type selected is GETTIMEOFDAY checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... no checking whether pthread_mutexattr_settype needs a declaration... yes checking for thread local storage specifier... __thread checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for backtrace_symbols... yes checking for backtrace_create_state in -lbacktrace... no checking for unw_backtrace in -lunwind... no checking whether backtrace_create_state is declared... no checking whether backtrace_print is declared... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: include/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines config.status: include/mplconfig.h is unchanged configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=/u/dbrennan/Codes/petsc/arch-linux-gnu-O' --disable-versioning --with-atomic-primitives=auto_allow_emulation 'MAKE=/usr/bin/gmake' '--libdir=/u/dbrennan/Codes/petsc/arch-linux-gnu-O/lib' 'CC=gcc' 'CFLAGS=-fPIC -fstack-protector -g -O ' 'AR=/usr/bin/ar' 'ARFLAGS=cr' 'CXX=g++' 'CXXFLAGS=-fstack-protector -g -O -fPIC ' '--disable-fortran' '--disable-fc' '--disable-f77' '--enable-shared' '--with-device=ch3:sock' '--with-pm=hydra' '--enable-g=meminit' --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/gmake sets $(MAKE)... yes checking whether /usr/bin/gmake supports nested variables... yes checking for style of include used by /usr/bin/gmake... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (/usr/bin/ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether /usr/bin/gmake supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: src/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines config.status: src/opa_config.h is unchanged configure: ===== done with src/openpa configure ===== sourcing /u/dbrennan/Codes/petsc/arch-linux-gnu-O/externalpackages/mpich-3.3a2/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for multiple weak symbol support... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether TRUE has been defined... no checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... no checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... no checking whether the compiler implements the namespace std... no checking whether available... no checking for GNU g++ version... unknown checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... /usr/bin/ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of bool... 0./configure: line 12435: printf %s\n: command not found ./configure: line 12436: printf %s\n: command not found configure: WARNING: The C++ compiler g++ cannot compile a program containing the header - this may indicate a problem with the C++ installation. Consider configuing with --disable-cxx configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. configure: error: unable to determine matching C type for C++ bool ******************************************************************************* File "/u/dbrennan/Codes/petsc/config/configure.py", line 393, in petsc_configure framework.configure(out = sys.stdout) File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/framework.py", line 1097, in configure self.processChildren() File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/framework.py", line 1086, in processChildren self.serialEvaluation(self.childGraph) File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/framework.py", line 1067, in serialEvaluation child.configure() File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/packages/MPICH.py", line 66, in configure return config.package.Package.configure(self) File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/package.py", line 857, in configure self.executeTest(self.configureLibrary) File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/package.py", line 751, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/package.py", line 354, in generateGuesses d = self.checkDownload() File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/packages/MPICH.py", line 35, in checkDownload return self.getInstallDir() File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/package.py", line 303, in getInstallDir installDir = self.Install() File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/packages/MPICH.py", line 57, in Install installDir = config.package.GNUPackage.Install(self) File "/u/dbrennan/Codes/petsc/config/BuildSystem/config/package.py", line 1319, in Install raise RuntimeError('Error running configure on ' + self.PACKAGE+': '+str(e)) ================================================================================ Finishing Configure Run at Tue Oct 3 16:06:27 2017 ================================================================================