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<p><span style="font-family:"Calibri","sans-serif";color:black">Guys,<o:p></o:p></span></p>
<p><span style="font-family:"Calibri","sans-serif";color:black"><o:p> </o:p></span></p>
<p><span style="font-family:"Calibri","sans-serif";color:black">I <span class="SpellE">
made</span> it working...<o:p></o:p></span></p>
<p><span style="font-family:"Calibri","sans-serif";color:black">After a lot of trial and error, based on Matthew, Stefano and Cray
</span><span style="font-size:10.5pt;font-family:"Menlo","serif";color:black;background:white">$PETSC_DIR/include/<span class="SpellE">petscconfiginfo.h</span></span><span style="font-family:"Calibri","sans-serif";color:black">, these are my "best" <span class="SpellE">confopts
which worked</span>:<o:p></o:p></span></p>
<p><span style="font-family:"Calibri","sans-serif";color:black"><o:p> </o:p></span></p>
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<div>CONFOPTS="--prefix=$PETSC_INSTALL_DIR \</div>
<div> --known-has-attribute-aligned=1 --known-mpi-int64_t=0 --known-bits-per-byte=8 \</div>
<div> --known-sdot-returns-double=0 --known-snrm2-returns-double=0 --known-level1-dcache-assoc=4 \</div>
<div> --known-level1-dcache-linesize=64 --known-level1-dcache-size=16384 --known-memcmp-ok=1 \</div>
<div> --known-mpi-c-double-complex=1 --known-mpi-long-double=1 \</div>
<div> --known-mpi-shared-libraries=0 \</div>
<div> --known-sizeof-MPI_Comm=4 --known-sizeof-MPI_Fint=4 --known-sizeof-char=1 --known-sizeof-double=8 --known-sizeof-float=4 \</div>
<div> --known-sizeof-int=4 --known-sizeof-long-long=8 --known-sizeof-long=8 --known-sizeof-short=2 --known-sizeof-size_t=8 --known-sizeof-void-p=8 \</div>
<div> --with-ar=ar \</div>
<div> --with-batch=1 \</div>
<div> --with-cc=/opt/cray/craype/2.5.10/bin/cc \</div>
<div> --with-clib-autodetect=0 \</div>
<div> --with-cxx=0 \</div>
<div> --with-cxxlib-autodetect=0 \</div>
<div> --with-debugging=0 \</div>
<div> --with-dependencies=0 \</div>
<div> --with-fc=/opt/cray/craype/2.5.10/bin/ftn \</div>
<div> --with-fortran-datatypes=0 --with-fortran-interfaces=0 --with-fortranlib-autodetect=0 \</div>
<div> --CFLAGS=-O3 \</div>
<div> --FFLAGS=-O3 -lstdc++ \</div>
<div> --LDFLAGS=-dynamic \</div>
<div> --FOPTFLAGS=-O3 \ --COPTFLAGS=-O3 \</div>
<div> --with-ranlib=ranlib \</div>
<div> --with-scalar-type=real \</div>
<div> --with-shared-ld=ar \</div>
<div> --with-etags=0 \</div>
<div> --with-x=0 \</div>
<div> --with-ssl=0 \</div>
<div> --with-shared-libraries=0 \</div>
<div> --with-mpi-lib="" --with-mpi-include="" \</div>
<div> --download-superlu_dist=$SOURCE_DIR/$SUPERLU_SOURCE_FILE \</div>
<div> --download-parmetis=$SOURCE_DIR/$PARMETIS_SOURCE_FILE \</div>
<div> --download-metis=$SOURCE_DIR/$METIS_SOURCE_FILE \</div>
<div> --with-external-packages-dir=$INSTALL_DIR "<br>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">Thanks for the help. And I hope this may help some Cray newbies like me.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><br>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">Guilherme V.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">From:</span></b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">
Stefano <span class="SpellE">Zampini</span> <stefano.zampini@gmail.com><br>
<b>Sent:</b> Tuesday, June 13, 2017 4:10 PM<br>
<b>To:</b> Vaz, Guilherme<br>
<b>Cc:</b> Matthew <span class="SpellE">Knepley</span>; <span class="SpellE">PETSc</span><br>
<b>Subject:</b> Re: [<span class="SpellE">petsc</span>-users] PETSC on Cray <span class="SpellE">
Hazelhen</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">
<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">Cray machines can be used with shared libraries, it’s not like the earlier versions of BG/Q<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">Yes, you need almost all of this. If you run with configure with the option —with-batch=1, will then generate something like the one
I have sent you.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">—with-shared-libraries is a
<span class="SpellE">PETSc</span> configuration, i.e. you will create <span class="SpellE">
libpetsc.so</span> <o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">—LDFLAGS=-dynamic is used to link dynamically a
<span class="SpellE">PETSc</span> executable<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">—known-<span class="SpellE">mpi</span>-shared-libraries=0 will use a statically linked MPI<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">You can remove the first two options listed above if you would like to have a static version of PETSC.<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">You may want to refine the options for optimized builds, i.e. add your
<span class="SpellE">favorite</span> COPTFLAGS and remove —with-debugging=1<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">Another thing you can do. Load any of the
<span class="SpellE">PETSc</span> modules on the XC40, and then look at the file<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.5pt;font-family:"Menlo","serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-size:10.5pt;font-family:"Menlo","serif";mso-fareast-font-family:"Times New Roman";color:black">$PETSC_DIR/include/<span class="SpellE">petscconfiginfo.h</span><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">On Jun 13, 2017, at 4:01 PM, Vaz, Guilherme <<a href="mailto:G.Vaz@marin.nl">G.Vaz@marin.nl</a>> wrote:<o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">Stefano/Mathew,<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">Do I need all this :-)?<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">And I
<span class="SpellE">dont</span> want a debug version, just an optimized release version. Thus I understand the -g -O0 flags for debug, but the rest I am not sure what is for debug and for a release version. Sorry...<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">I am also kind of confused on the shared libraries issue,<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">'</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">--known-<span class="SpellE">mpi</span>-shared-libraries=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">--with-shared-libraries=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">on the static
<span class="SpellE">vs</span> dynamic linking (I thought in XC-40 we had to compile everything statically,<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">--LDFLAGS=-dynamic</span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">and on the FFFLAG:</span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">--FFLAGS=-<span class="SpellE">mkl</span>=sequential -g -O0 -<span class="SpellE">lstdc</span>++</span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">Is this to be used with Intel MKL libraries?</span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">Thanks for the help, you both.</span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;background:white">Guilherme V.</span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><o:p></o:p></span></p>
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<p class="MsoNormal"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><br>
</span><b><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D;background:white">dr.
<span class="SpellE">ir</span>.<span class="apple-converted-space"> </span>Guilherme<span class="apple-converted-space"> </span>Vaz<span class="apple-converted-space"> </span>|<span class="apple-converted-space"> </span>CFD Research Coordinator / Senior CFD
Researcher<span class="apple-converted-space"> </span> |<span class="apple-converted-space"> </span>Research & Development</span></b><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black"><br>
</span><b><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D;background:white">MARIN</span></b><span class="apple-converted-space"><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D;background:white"> </span></span><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D;background:white">|
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</span><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D;background:white">MARIN news:<span class="apple-converted-space"> </span><a href="http://www.marin.nl/web/News/News-items/MARIN-deelt-onderzoek-tijdens-RD-Seminar-21-juni-2017.htm" title="">MARIN
<span class="SpellE">deelt</span> <span class="SpellE">onderzoek</span> <span class="SpellE">
tijdens</span> R&D Seminar, 21 <span class="SpellE">juni</span> 2017</a></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:black">
<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">From:</span></b><span class="apple-converted-space"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> </span></span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Stefano
<span class="SpellE">Zampini</span> <<a href="mailto:stefano.zampini@gmail.com">stefano.zampini@gmail.com</a>><br>
<b>Sent:</b><span class="apple-converted-space"> </span>Tuesday, June 13, 2017 3:42 PM<br>
<b>To:</b><span class="apple-converted-space"> </span>Vaz, Guilherme<br>
<b>Cc:</b><span class="apple-converted-space"> </span>Matthew <span class="SpellE">
Knepley</span>; <span class="SpellE">PETSc</span><br>
<b>Subject:</b><span class="apple-converted-space"> </span>Re: [<span class="SpellE">petsc</span>-users] PETSC on Cray
<span class="SpellE">Hazelhen</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> <o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Guilherme,
<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">here is my debug configuration (with shared libraries) in
<span class="SpellE">PETSc</span> on a XC40<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--CFLAGS=-<span class="SpellE">mkl</span>=sequential
-g -O0</span></span><span class="apple-converted-space"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> </span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--CXXFLAGS=-<span class="SpellE">mkl</span>=sequential
-g -O0</span></span><span class="apple-converted-space"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> </span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--FFLAGS=-<span class="SpellE">mkl</span>=sequential
-g -O0 -<span class="SpellE">lstdc</span>++</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--LDFLAGS=-dynamic</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--download-<span class="SpellE">metis</span>-<span class="SpellE">cmake</span>-arguments=-DCMAKE_C_COMPILER_FORCED=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--download-<span class="SpellE">metis</span>=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--download-<span class="SpellE">parmetis</span>-<span class="SpellE">cmake</span>-arguments=-DCMAKE_C_COMPILER_FORCED=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--download-<span class="SpellE">parmetis</span>=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-bits-per-byte=8</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-has-attribute-aligned=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-level1-dcache-assoc=8</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-level1-dcache-linesize=64</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-level1-dcache-size=32768</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">memcmp</span>-ok=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">mpi</span>-c-double-complex=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-mpi-int64_t=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">mpi</span>-long-double=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">mpi</span>-shared-libraries=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sdot</span>-returns-double=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-<span class="SpellE">MPI_Comm</span>=4</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-<span class="SpellE">MPI_Fint</span>=4</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-char=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-double=8</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-float=4</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-<span class="SpellE">int</span>=4</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-long-long=8</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-long=8</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-short=2</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-<span class="SpellE">size_t</span>=8</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-<span class="SpellE">sizeof</span>-void-p=8</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--known-snrm2-returns-double=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">ar</span>=<span class="SpellE">ar</span></span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-batch=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-cc=/opt/<span class="SpellE">cray</span>/<span class="SpellE">craype</span>/2.4.2/bin/cc</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">clib</span>-<span class="SpellE">autodetect</span>=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">cmake</span>=/home/<span class="SpellE">zampins</span>/local/bin/<span class="SpellE">cmake</span></span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">cxx</span>=/opt/<span class="SpellE">cray</span>/<span class="SpellE">craype</span>/2.4.2/bin/CC</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">cxxlib</span>-<span class="SpellE">autodetect</span>=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-debugging=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-dependencies=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">etags</span>=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">fc</span>=/opt/<span class="SpellE">cray</span>/<span class="SpellE">craype</span>/2.4.2/bin/<span class="SpellE">ftn</span></span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">fortran</span>-<span class="SpellE">datatypes</span>=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">fortran</span>-interfaces=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">fortranlib</span>-<span class="SpellE">autodetect</span>=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">pthread</span>=0</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-<span class="SpellE">ranlib</span>=<span class="SpellE">ranlib</span></span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-scalar-type=real</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-shared-ld=<span class="SpellE">ar</span></span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">--with-shared-libraries=1</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> '</span></span><span class="gmail-s2"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">PETSC_ARCH=arch-<span class="SpellE">intel</span>-debug</span></span><span class="gmail-s1"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">',</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p></o:p></span></p>
</div>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
<div>
<p class="MsoNormal" style="background:white"><span lang="NL" style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;mso-ansi-language:NL">2017-06-13 15:34 GMT+02:00 Vaz, Guilherme<span class="apple-converted-space"> </span><</span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><a href="mailto:G.Vaz@marin.nl" target="_blank"><span lang="NL" style="mso-ansi-language:NL">G.Vaz@marin.nl</span></a></span><span lang="NL" style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121;mso-ansi-language:NL">>:<o:p></o:p></span></p>
<div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Dear Matthew,<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Thanks. It went further, but now I get:<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">TESTING:
<span class="SpellE">configureMPIEXEC</span> from config.packages.MPI(/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/packages/MPI.py:143)<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">*******************************************************************************<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">-------------------------------------------------------------------------------<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Must give a default value for known-<span class="SpellE">mpi</span>-shared-libraries since executables cannot
be run<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">*******************************************************************************<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Last lines from the log:<o:p></o:p></span></p>
</div>
<div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "./<span class="SpellE">config</span>/configure.py", line 405, in
<span class="SpellE">petsc_configure</span><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<span class="SpellE">framework.configure</span>(out = <span class="SpellE">sys.stdout</span>)<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/framework.py",
line 1090, in configure<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<span class="SpellE">self.processChildren</span>()<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/framework.py",
line 1079, in <span class="SpellE">processChildren</span><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<span class="SpellE">self.serialEvaluation</span>(<span class="SpellE">self.childGraph</span>)<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/framework.py",
line 1060, in <span class="SpellE">serialEvaluation</span><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<span class="SpellE">child.configure</span>()<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/package.py",
line 791, in configure<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<span class="SpellE">self.executeTest</span>(<span class="SpellE">self.checkSharedLibrary</span>)<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/base.py",
line 126, in <span class="SpellE">executeTest</span><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> ret = test(*<span class="SpellE">args</span>,**<span class="SpellE">kargs</span>)<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/packages/MPI.py",
line 135, in <span class="SpellE">checkSharedLibrary</span><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<span class="SpellE">self.shared</span> = <span class="SpellE">self.libraries.checkShared</span>('#include <<span class="SpellE">mpi.h</span>>\<span class="SpellE">n','MPI_Init','MPI_Initialized','MPI_Finalize',checkLink</span> =
<span class="SpellE">self.checkPackageLink,libraries</span> = self.lib, <span class="SpellE">
defaultArg</span> = 'known-<span class="SpellE">mpi</span>-shared-libraries', ex<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span class="SpellE"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">ecutor</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
= <span class="SpellE">self.mpiexec</span>)<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/libraries.py",
line 471, in <span class="SpellE">checkShared</span><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> if
<span class="SpellE">self.checkRun</span>(<span class="SpellE">defaultIncludes</span>, body,
<span class="SpellE">defaultArg</span> = <span class="SpellE">defaultArg</span>, executor = executor):<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/base.py",
line 628, in <span class="SpellE">checkRun</span><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> (output,
<span class="SpellE">returnCode</span>) = <span class="SpellE">self.outputRun</span>(includes, body, cleanup,
<span class="SpellE">defaultArg</span>, executor)<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> File "/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/base.py",
line 598, in <span class="SpellE">outputRun</span><o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> raise
<span class="SpellE">ConfigureSetupError</span>('Must give a default value for '+<span class="SpellE">defaultOutputArg</span>+' since executables cannot be run')<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><br>
Any ideas? Something related with <o:p></o:p></span></p>
<div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-shared-libraries=0 \ <o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-batch=1 \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">The first I set because it was in the
<span class="SpellE">cray</span> example, and the second because <span class="SpellE">
aprun</span> (the <span class="SpellE">mpiexec</span> of Cray) is not available in the frontend. <o:p></o:p></span></p>
</div>
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<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
</div>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Thanks,<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Guilherme V.<o:p></o:p></span></p>
</div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><br>
</span><b><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D">dr.
<span class="SpellE">ir</span>.<span class="apple-converted-space"> </span>Guilherme<span class="apple-converted-space"> </span>Vaz<span class="apple-converted-space"> </span>|<span class="apple-converted-space"> </span>CFD Research Coordinator / Senior CFD
Researcher<span class="apple-converted-space"> </span> |<span class="apple-converted-space"> </span>Research & Development</span></b><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><br>
</span><b><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D">MARIN</span></b><span class="apple-converted-space"><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D"> </span></span><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D">|
T<span class="apple-converted-space"> </span>+31 317 49 33 25<span class="apple-converted-space"> </span>| M<span class="apple-converted-space"> </span>+31 621 13 11 97</span><span class="apple-converted-space"><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> </span></span><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">|<span class="apple-converted-space"> </span><a href="mailto:G.Vaz@marin.nl" target="_blank" title="">G.Vaz@marin.nl</a> |<span class="apple-converted-space"> </span><a href="http://www.marin.nl/" target="_blank" title="">www.marin.nl</a></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><br>
<br>
<a href="https://www.linkedin.com/company/marin" target="_blank"><image628296.PNG></a> <a href="http://www.youtube.com/marinmultimedia" target="_blank"><imagecdd6dd.PNG></a> <a href="https://twitter.com/MARIN_nieuws" target="_blank"><imageae7ad3.PNG></a> <a href="https://www.facebook.com/marin.wageningen" target="_blank"><image9aa6ed.PNG></a><br>
</span><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D">MARIN news:<span class="apple-converted-space"> </span><a href="http://www.marin.nl/web/News/News-items/MARIN-deelt-onderzoek-tijdens-RD-Seminar-21-juni-2017.htm" target="_blank" title="">MARIN
<span class="SpellE">deelt</span> <span class="SpellE">onderzoek</span> <span class="SpellE">
tijdens</span> R&D Seminar, 21 <span class="SpellE">juni</span> 2017</a></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<o:p></o:p></span></p>
<div>
<div class="MsoNormal" align="center" style="text-align:center;background:white">
<span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<hr size="2" width="1337" style="width:1002.95pt" align="center">
</span></div>
<div id="m_4042342488001796776divRplyFwdMsg">
<p class="MsoNormal" style="background:white"><b><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">From:</span></b><span class="apple-converted-space"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> </span></span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Matthew
<span class="SpellE">Knepley</span> <<a href="mailto:knepley@gmail.com" target="_blank">knepley@gmail.com</a>><br>
<b>Sent:</b><span class="apple-converted-space"> </span>Tuesday, June 13, 2017 2:34 PM<br>
<b>To:</b><span class="apple-converted-space"> </span>Vaz, Guilherme<br>
<b>Cc:</b><span class="apple-converted-space"> </span><span class="SpellE">PETSc</span><br>
<b>Subject:</b><span class="apple-converted-space"> </span>Re: [<span class="SpellE">petsc</span>-users] PETSC on Cray
<span class="SpellE">Hazelhen</span></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
<o:p></o:p></span></p>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> <o:p></o:p></span></p>
</div>
</div>
<div>
<div>
<div>
<div>
<div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">On Tue, Jun 13, 2017 at 3:48 AM, Vaz, Guilherme<span class="apple-converted-space"> </span><<a href="mailto:G.Vaz@marin.nl" target="_blank">G.Vaz@marin.nl</a>><span class="apple-converted-space"> </span>wrote:<o:p></o:p></span></p>
<div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Dear all,<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">I am trying to install PETSC on a Cray XC40 system (<span class="SpellE">Hazelhen</span>) with the usual Cray
wrappers for Intel compilers, with some chosen external packages and MKL libraries.<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">I read some threads in the mailing list about this, and I tried the petsc-3.7.5/config/examples/arch-cray-xt6-pkgs-opt.py configuration options.
After trying this (please abstract from my own <span class="SpellE">env</span> <span class="SpellE">vars</span>),<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">CONFOPTS="--prefix=$PETSC_INSTALL_DIR \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-cc=cc \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">cxx</span>=CC \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">fc</span>=<span class="SpellE">ftn</span> \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">clib</span>-<span class="SpellE">autodetect</span>=0 \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">cxxlib</span>-<span class="SpellE">autodetect</span>=0 \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">fortranlib</span>-<span class="SpellE">autodetect</span>=0 \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --COPTFLAGS=-fast -mp \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --CXXOPTFLAGS=-fast -mp \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --FOPTFLAGS=-fast -mp \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-shared-libraries=0 \ <o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-batch=1 \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-x=0 \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">mpe</span>=0 \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-debugging=0 \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --download-<span class="SpellE">superlu_dist</span>=$SOURCE_DIR/$SUPERLU_SOURCE_FILE \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">blas</span>-<span class="SpellE">lapack</span>-dir=$BLASDIR \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --download-<span class="SpellE">parmetis</span>=$SOURCE_DIR/$PARMETIS_SOURCE_FILE \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --download-<span class="SpellE">metis</span>=$SOURCE_DIR/$METIS_SOURCE_FILE \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-external-packages-dir=$INSTALL_DIR \<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">ssl</span>=0<span class="apple-converted-space"> </span>"<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">I get the following error:<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">TESTING:
<span class="SpellE">checkFortranLinkingCxx</span> from config.compilers(/zhome/academic/HLRS/pri/iprguvaz/ReFRESCO/Dev/trunk/Libs/build/petsc-3.7.5/config/BuildSystem/config/compilers.py:1097)<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">*******************************************************************************<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details):<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">-------------------------------------------------------------------------------<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Fortran could not successfully link C++ objects<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">*******************************************************************************<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><br>
Does it ring a bell? Any tips?<o:p></o:p></span></p>
</div>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">You turned off
<span class="SpellE">autodetection</span>, so it will not find <span class="SpellE">
libstdc</span>++. That either has to be put in LIBS, or I would recommend<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> --with-<span class="SpellE">cxx</span>=0<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">since nothing you have
<span class="SpellE">there</span> requires C++.<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> Thanks,<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><o:p> </o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> Matt<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> <o:p></o:p></span></p>
</div>
<blockquote style="border:none;border-left:solid #CCCCCC 1.0pt;mso-border-left-alt:solid #CCCCCC .75pt;padding:0in 0in 0in 6.0pt;margin-left:4.8pt;margin-right:0in">
<div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Thanks,<o:p></o:p></span></p>
</div>
<div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Guilherme V.<o:p></o:p></span></p>
</div>
<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><br>
</span><b><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D">dr.
<span class="SpellE">ir</span>.<span class="apple-converted-space"> </span>Guilherme<span class="apple-converted-space"> </span>Vaz<span class="apple-converted-space"> </span>|<span class="apple-converted-space"> </span>CFD Research Coordinator / Senior CFD
Researcher<span class="apple-converted-space"> </span> |<span class="apple-converted-space"> </span>Research & Development</span></b><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><br>
</span><b><span style="font-size:9.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D">MARIN</span></b><span class="apple-converted-space"><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D"> </span></span><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D">|
T<span class="apple-converted-space"> </span><a href="tel:+31%20317%20493%20325" target="_blank">+31 317 49 33 25</a><span class="apple-converted-space"> </span>| M<span class="apple-converted-space"> </span>+31 621 13 11 97</span><span class="apple-converted-space"><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"> </span></span><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">|<span class="apple-converted-space"> </span><a href="mailto:G.Vaz@marin.nl" target="_blank" title="">G.Vaz@marin.nl</a> |<span class="apple-converted-space"> </span><a href="http://www.marin.nl/" target="_blank" title="">www.marin.nl</a></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><br>
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<a href="https://www.linkedin.com/company/marin" target="_blank"><imageb0ee12.PNG></a> <a href="http://www.youtube.com/marinmultimedia" target="_blank"><imaged8f08c.PNG></a> <a href="https://twitter.com/MARIN_nieuws" target="_blank"><imagedacd80.PNG></a> <a href="https://www.facebook.com/marin.wageningen" target="_blank"><image1bd020.PNG></a><br>
</span><span style="font-size:8.0pt;font-family:"Verdana","sans-serif";mso-fareast-font-family:"Times New Roman";color:#7D7D7D">MARIN news:<span class="apple-converted-space"> </span><a href="http://www.marin.nl/web/News/News-items/Maritime-Safety-seminar-September-12-Singapore.htm" target="_blank" title="">Maritime
Safety seminar, September 12, Singapore</a></span><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">What most experimenters take for granted before they begin their experiments is infinitely more interesting
than any results to which their experiments lead.<br>
-- Norbert Wiener<o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121"><a href="http://www.caam.rice.edu/~mk51/" target="_blank">http://www.caam.rice.edu/~mk51/</a><o:p></o:p></span></p>
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<p class="MsoNormal" style="background:white"><span style="font-family:"Calibri","sans-serif";mso-fareast-font-family:"Times New Roman";color:#212121">Stefano<o:p></o:p></span></p>
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<font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">dr. ir.</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">
</font><font style="font-family: Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">Guilherme</font><font style="font-family: Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">Vaz</font><font size="3" face="Segoe UI"></font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;"> |
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">CFD Research Coordinator / Senior CFD Researcher
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;"> |
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;font-weight:bold;">Research & Development</font><br>
<font style="font-family:Verdana;font-size:9pt;color:#7D7D7D;font-weight:bold;">MARIN</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;"> | T
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;">+31 317 49 33 25</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;"> | M
</font><font style="font-family:Verdana;font-size:8pt;color:#7D7D7D;">+31 621 13 11 97</font><font color="#7d7d7d" size="2" face="Segoe UI"></font><font style="font-family:Verdana;font-size:8pt;"> |
</font><span style="font-family:Verdana;font-size:8pt;"><a href="mailto:G.Vaz@marin.nl" title="" target="" style="font-family:Verdana;font-size:8pt;"><span style="font-family:Verdana; font-size:8pt;">G.Vaz@marin.nl</span></a></span><font color="#7d7d7d" size="2" face="Segoe UI"></font><font style="font-family:Verdana;font-size:8pt;"> |
</font><span style="font-family:Verdana;font-size:8pt;"><a href="http://www.marin.nl" title="" target="" style="font-family:Verdana;font-size:8pt;"><span style="font-family:Verdana; font-size:8pt;">www.marin.nl</span></a></span><br>
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<font style="FONT-FAMILY: Verdana; FONT-SIZE: 8pt" color="#7d7d7d" size="2" face="Verdana">MARIN news:
<font style="font-family:Verdana;font-size:8pt;"><span style="font-family:Verdana;font-size:8pt;"><a href="http://www.marin.nl/web/News/News-items/Floating-cities-our-future-is-on-the-water-1.htm" title="" target="" style="font-family:Verdana;font-size:8pt;"><span style="font-family:Verdana; font-size:8pt;">Floating
cities: our future is on the water</span></a></span></font></font>
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