<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><br class=""><div><blockquote type="cite" class=""><div class="">On 7 Mar 2017, at 16:29, Matthew Knepley <<a href="mailto:knepley@gmail.com" class="">knepley@gmail.com</a>> wrote:</div><br class="Apple-interchange-newline"><div class=""><div dir="ltr" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><div class="gmail_extra"><div class="gmail_quote">On Tue, Mar 7, 2017 at 3:28 AM, Maximilian Hartig<span class="Apple-converted-space"> </span><span dir="ltr" class=""><<a href="mailto:imilian.hartig@gmail.com" target="_blank" class="">imilian.hartig@gmail.com</a>></span><span class="Apple-converted-space"> </span>wrote:<br class=""><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;" class="">It seems you are correct. In theory, the problem should not be over constrained. It is 1/4 of a simple hollow cylinder geometry with rotational symmetry around the z-axis. I restrict movement completely on the upper and lower (z) end as well as movement in x- and y- direction respectively on the symmetry planes.<div class="">I am not completely sure what I am looking at with the output of -dm_petscsection_view. But these lines struck me as odd:</div><div class=""><br class=""></div><div class=""><div class=""> </div><div class=""><div class=""> <span class="Apple-converted-space"> </span>(5167) dim 3 offset 0 constrained 0 1 1 2</div><div class=""> <span class="Apple-converted-space"> </span>(5168) dim 3 offset 6 constrained 0 1 1 2</div></div><div class="">.</div><div class="">.</div><div class="">.</div><div class=""><div class=""> (5262) dim 3 offset 0 constrained 0 0 1 2</div><div class=""> (5263) dim 3 offset 6 constrained 0 0 1 2</div></div><div class=""><br class=""></div><div class=""><br class=""></div><div class="">It seems that vertices that are part of the closures of both Face Sets get restricted twice in their respective degree of freedom.</div></div></div></blockquote><div class=""><br class=""></div><div class="">Yes, that is exactly what happens.</div><div class=""> </div><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;" class=""><div class=""><div class="">This does however also happen when restricting movement in x- direction only for upper and lower faces. In that case without the solver producing an error:</div><div class=""><div class=""> <span class="Apple-converted-space"> </span>(20770) dim 3 offset 24 constrained 0 0</div><div class=""> <span class="Apple-converted-space"> </span>(20771) dim 3 offset 30 constrained 0 0</div><div class=""> <span class="Apple-converted-space"> </span>(20772) dim 3 offset 36 constrained 0 0</div><div class=""> <span class="Apple-converted-space"> </span>(20773) dim 3 offset 42 constrained 0 0</div></div></div></div></blockquote><div class=""><br class=""></div><div class="">The fact that this does not SEGV is just luck.</div><div class=""><br class=""></div><div class="">Now, I did not put in any guard against this because I was not sure what should happen. We could error if a local index is repeated, or</div><div class="">we could ignore it. This seems unsafe if you try to constrain it with two different values, but there is no way for me to tell if the values are</div><div class="">compatible. Thus I just believed whatever the user told me.</div></div></div></div></div></blockquote><blockquote type="cite" class=""><div class=""><div dir="ltr" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><div class="gmail_extra"><div class="gmail_quote"><div class=""><br class=""></div><div class="">What is the intention here? It would be straightforward to ignore duplicates I guess.</div></div></div></div></div></blockquote><div>Yes, ignoring duplicates would solve the problem then. I can think of no example where imposing two different Dirichlet BC on the same DOF of the same vertex would make sense (I might be wrong of course). That means the only issue is to determine wether the first or the second BC is the correct one to be imposed.</div><div>I don’t know how I could filter out the vertices in question from the Label. I use GMSH to construct my meshes and could create a label for the edges without too much effort. But I cannot see an easy way to exclude them when imposing the BC.</div><div>I tried to figure out where PETSC actually imposes the BC but got lost a bit in the source. Could you kindly point me towards the location?</div><div><br class=""></div><div>Thanks,</div><div>Max</div><div><br class=""></div><br class=""><blockquote type="cite" class=""><div class=""><div dir="ltr" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class=""><div class="gmail_extra"><div class="gmail_quote"><div class=""><br class=""></div><div class=""> <span class="Apple-converted-space"> </span>Thanks,</div><div class=""><br class=""></div><div class=""> Matt</div><div class=""> </div><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;" class=""><div class=""><div class="">Thanks,</div><div class="">Max</div><div class=""><div class="h5"><div class=""><br class=""></div><div class=""><blockquote type="cite" class=""><div class="">On 6 Mar 2017, at 14:43, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank" class="">knepley@gmail.com</a>> wrote:</div><br class="m_-4772015861371070217Apple-interchange-newline"><div class=""><div dir="ltr" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;" class=""><div class="gmail_extra"><div class="gmail_quote">On Mon, Mar 6, 2017 at 8:38 AM, Maximilian Hartig<span class="m_-4772015861371070217Apple-converted-space"> </span><span dir="ltr" class=""><<a href="mailto:imilian.hartig@gmail.com" target="_blank" class="">imilian.hartig@gmail.<wbr class="">com</a>></span><span class="m_-4772015861371070217Apple-converted-space"> </span>wrote:<br class=""><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;" class="">Of course, please find the source as well as the mesh attached below. I run with:<div class=""><br class=""><div class="">-def_petscspace_order 2 -vel_petscspace_order 2 -snes_monitor -snes_converged_reason -ksp_converged_reason -ksp_monitor _true_residual -ksp_type fgmres -pc_type sor</div></div></div></blockquote><div class=""><br class=""></div><div class="">This sounds like over-constraining a point to me. I will try and run it soon, but I have a full schedule this week. The easiest</div><div class="">way to see if this is happening should be to print out the Section that gets made</div><div class=""><br class=""></div><div class=""> <span class="Apple-converted-space"> </span>-dm_petscsection_view</div><div class=""><br class=""></div><div class=""> <span class="m_-4772015861371070217Apple-converted-space"> </span>Thanks,</div><div class=""><br class=""></div><div class=""> Matt</div><div class=""> </div><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;" class=""><div class=""><div class="">Thanks,</div><div class="">Max</div><div class=""><br class=""></div><div class=""></div></div></div><br class=""><div style="word-wrap: break-word;" class=""><div class=""><div class=""></div></div></div><br class=""><div style="word-wrap: break-word;" class=""><div class=""><div class=""></div><div class=""><br class=""><div class=""><blockquote type="cite" class=""><div class="">On 4 Mar 2017, at 11:34, Sander Arens <<a href="mailto:Sander.Arens@ugent.be" target="_blank" class="">Sander.Arens@ugent.be</a>> wrote:</div><br class="m_-4772015861371070217m_557368921975263504Apple-interchange-newline"><div class=""><div dir="ltr" class=""><div class=""><div class="">Hmm, strange you also get the error in serial. Can you maybe send a minimal working which demonstrates the error?<br class=""><br class=""></div>Thanks,<br class=""></div>Sander<br class=""></div><div class="gmail_extra"><br class=""><div class="gmail_quote">On 3 March 2017 at 23:07, Maximilian Hartig<span class="m_-4772015861371070217Apple-converted-space"> </span><span dir="ltr" class=""><<a href="mailto:imilian.hartig@gmail.com" target="_blank" class="">imilian.hartig@gmail.<wbr class="">com</a>></span><span class="m_-4772015861371070217Apple-converted-space"> </span>wrote:<br class=""><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div style="word-wrap: break-word;" class="">Yes Sander, your assessment is correct. I use DMPlex and specify the BC using DMLabel. I do however get this error also when running in serial.<div class=""><br class=""></div><div class="">Thanks,</div><div class="">Max</div><div class=""><div class="m_-4772015861371070217m_557368921975263504h5"><div class=""><br class=""><div class=""><div class=""><blockquote type="cite" class=""><div class="">On 3 Mar 2017, at 22:14, Matthew Knepley <<a href="mailto:knepley@gmail.com" target="_blank" class="">knepley@gmail.com</a>> wrote:</div><br class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-interchange-newline"><div class=""><div dir="ltr" style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant-caps: normal; font-weight: normal; letter-spacing: normal; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; word-spacing: 0px;" class=""><div class="gmail_extra"><div class="gmail_quote">On Fri, Mar 3, 2017 at 12:56 PM, Sander Arens<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><span dir="ltr" class=""><<a href="mailto:Sander.Arens@ugent.be" target="_blank" class="">Sander.Arens@ugent.be</a>></span><span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><wbr class="">wrote:<br class=""><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div dir="ltr" class=""><div class=""><div class=""><div class="">Max,<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><br class=""><br class=""></div>I'm assuming you use DMPlex for your mesh? If so, did you only specify the faces in the DMLabel (and not vertices or edges). Do you get this error only in parallel?<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><br class=""></div><br class=""></div>If so, I can confirm this bug. I submitted a pull request for this yesterday.</div></blockquote><div class=""><br class=""></div><div class="">Yep, I saw Sander's pull request. I will get in merged in tomorrow when I get home to Houston.</div><div class=""><br class=""></div><div class=""> <span class="m_-4772015861371070217Apple-converted-space"> </span>Thanks,</div><div class=""><br class=""></div><div class=""> Matt</div><div class=""> </div><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344HOEnZb"><div class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344h5"><div class="gmail_extra"><div class="gmail_quote">On 3 March 2017 at 18:43, Lukas van de Wiel<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><span dir="ltr" class=""><<a href="mailto:lukas.drinkt.thee@gmail.com" target="_blank" class="">lukas.drinkt.thee@gmail.<wbr class="">com</a>></span><span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span>wrote:<br class=""><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;"><div dir="ltr" class=""><div class=""><div class="">You have apparently preallocated the non-zeroes of you matrix, and the room was insufficient to accommodate all your equations.<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><br class=""> <br class="">What happened after you tried:<br class=""><br class="">MatSetOption(A, MAT_NEW_NONZERO_ALLOCATION_ERR<wbr class="">, PETSC_FALSE)<br class=""><br class=""><br class=""></div>Cheers<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344m_-9110966300037860180HOEnZb"><font color="#888888" class=""><br class=""></font></span></div><span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344m_-9110966300037860180HOEnZb"><font color="#888888" class="">Lukas<br class=""></font></span></div><div class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344m_-9110966300037860180HOEnZb"><div class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344m_-9110966300037860180h5"><div class="gmail_extra"><br class=""><div class="gmail_quote">On Fri, Mar 3, 2017 at 6:37 PM, Maximilian Hartig<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><span dir="ltr" class=""><<a href="mailto:imilian.hartig@gmail.com" target="_blank" class="">imilian.hartig@gmail.c<wbr class="">om</a>></span><span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span>wrote:<br class=""><blockquote class="gmail_quote" style="margin: 0px 0px 0px 0.8ex; border-left-width: 1px; border-left-color: rgb(204, 204, 204); border-left-style: solid; padding-left: 1ex;">Hello,<br class=""><br class="">I am working on a transient structural FEM code with PETSc. I managed to create a slow but functioning program with the use of petscFE and a TS solver. The code runs fine until I try to restrict movement in all three spatial directions for one face. I then get the error which is attached below.<br class="">So apparently DMPlexMatSetClosure tries to write/read beyond what was priorly allocated. I do however not call MatSeqAIJSetPreallocation myself in the code. So I’m unsure where to start looking for the bug. In my understanding, PETSc should know from the DM how much space to allocate.<br class="">Could you kindly give me a hint?<br class=""><br class="">Thanks,<br class=""><br class="">Max<br class=""><br class="">0 SNES Function norm 2.508668036663e-06<br class="">[0]PETSC ERROR: --------------------- Error Message ------------------------------<wbr class="">------------------------------<wbr class="">--<br class="">[0]PETSC ERROR: Argument out of range<br class="">[0]PETSC ERROR: New nonzero at (41754,5) caused a malloc<br class="">Use MatSetOption(A, MAT_NEW_NONZERO_ALLOCATION_ERR<wbr class="">, PETSC_FALSE) to turn off this check<br class="">[0]PETSC ERROR: See<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><a href="http://www.mcs.anl.gov/petsc/documentation/faq.html" rel="noreferrer" target="_blank" class="">http://www.mcs.anl.gov/pet<wbr class="">sc/documentation/faq.html</a><span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span>for trouble shooting.<br class="">[0]PETSC ERROR: Petsc Development GIT revision: v3.7.5-3223-g99077fc GIT Date: 2017-02-28 13:41:43 -0600<br class="">[0]PETSC ERROR: ./S3 on a arch-linux-gnu-intel named XXXXXXX by hartig Fri Mar 3 17:55:57 2017<br class="">[0]PETSC ERROR: Configure options PETSC_ARCH=arch-linux-gnu-inte<wbr class="">l --with-cc=/opt/intel/compilers<wbr class="">_and_libraries/linux/mpi/intel<wbr class="">64/bin/mpiicc --with-cxx=/opt/intel/compiler<wbr class="">s_and_libraries/linux/mpi/inte<wbr class="">l64/bin/mpiicpc --with-fc=/opt/intel/compilers<wbr class="">_and_libraries/linux/mpi/intel<wbr class="">64/bin/mpiifort --download-ml<br class="">[0]PETSC ERROR: #1 MatSetValues_SeqAIJ() line 455 in /home/hartig/petsc/src/mat/imp<wbr class="">ls/aij/seq/aij.c<br class="">[0]PETSC ERROR: #2 MatSetValues() line 1270 in /home/hartig/petsc/src/mat/int<wbr class="">erface/matrix.c<br class="">[0]PETSC ERROR: [0]ERROR in DMPlexMatSetClosure<br class="">[0]mat for sieve point 60<br class="">[0]mat row indices[0] = 41754<br class="">[0]mat row indices[1] = 41755<br class="">[0]mat row indices[2] = 41756<br class="">[0]mat row indices[3] = 41760<br class="">[0]mat row indices[4] = 41761<br class="">[0]mat row indices[5] = 41762<br class="">[0]mat row indices[6] = 41766<br class="">[0]mat row indices[7] = -41768<br class="">[0]mat row indices[8] = 41767<br class="">[0]mat row indices[9] = 41771<br class="">[0]mat row indices[10] = -41773<br class="">[0]mat row indices[11] = 41772<br class="">[0]mat row indices[12] = 41776<br class="">[0]mat row indices[13] = 41777<br class="">[0]mat row indices[14] = 41778<br class="">[0]mat row indices[15] = 41782<br class="">[0]mat row indices[16] = -41784<br class="">[0]mat row indices[17] = 41783<br class="">[0]mat row indices[18] = 261<br class="">[0]mat row indices[19] = -263<br class="">[0]mat row indices[20] = 262<br class="">[0]mat row indices[21] = 24318<br class="">[0]mat row indices[22] = 24319<br class="">[0]mat row indices[23] = 24320<br class="">[0]mat row indices[24] = -7<br class="">[0]mat row indices[25] = -8<br class="">[0]mat row indices[26] = 6<br class="">[0]mat row indices[27] = 1630<br class="">[0]mat row indices[28] = -1632<br class="">[0]mat row indices[29] = 1631<br class="">[0]mat row indices[30] = 41757<br class="">[0]mat row indices[31] = 41758<br class="">[0]mat row indices[32] = 41759<br class="">[0]mat row indices[33] = 41763<br class="">[0]mat row indices[34] = 41764<br class="">[0]mat row indices[35] = 41765<br class="">[0]mat row indices[36] = 41768<br class="">[0]mat row indices[37] = 41769<br class="">[0]mat row indices[38] = 41770<br class="">[0]mat row indices[39] = 41773<br class="">[0]mat row indices[40] = 41774<br class="">[0]mat row indices[41] = 41775<br class="">[0]mat row indices[42] = 41779<br class="">[0]mat row indices[43] = 41780<br class="">[0]mat row indices[44] = 41781<br class="">[0]mat row indices[45] = 41784<br class="">[0]mat row indices[46] = 41785<br class="">[0]mat row indices[47] = 41786<br class="">[0]mat row indices[48] = 263<br class="">[0]mat row indices[49] = 264<br class="">[0]mat row indices[50] = 265<br class="">[0]mat row indices[51] = 24321<br class="">[0]mat row indices[52] = 24322<br class="">[0]mat row indices[53] = 24323<br class="">[0]mat row indices[54] = 5<br class="">[0]mat row indices[55] = 6<br class="">[0]mat row indices[56] = 7<br class="">[0]mat row indices[57] = 1632<br class="">[0]mat row indices[58] = 1633<br class="">[0]mat row indices[59] = 1634<br class="">[0] 1.29801 0.0998428 -0.275225 1.18171 -0.0093323 0.055045 1.18146 0.00525527 -0.11009 -0.588378 0.264666 -0.0275225 -2.39586 -0.210511 0.22018 -0.621071 0.0500786 0.137613 -0.180869 -0.0974804 0.0344031 -0.0302673 -0.09 0. -0.145175 -0.00383346 -0.00688063 0.300442 -0.00868618 -0.0275225 8.34577e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0.<br class="">[0] 0.0998428 0.590663 -0.0320009 0.0270594 0.360043 0.0297282 -0.0965489 0.270936 -0.0652389 0.32647 -0.171351 -0.00845384 -0.206902 -0.657189 0.0279137 0.0500786 -0.197561 -0.0160508 -0.12748 -0.138996 0.0408591 -0.06 -0.105935 0.0192308 0.00161757 -0.0361182 0.0042968 -0.0141372 0.0855084 -0.000284088 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0.<br class="">[0] -0.275225 -0.0320009 0.527521 -0.055045 0.0285918 0.234796 -0.165135 -0.0658071 0.322754 0.0275225 -0.0207062 -0.114921 0.33027 0.0418706 -0.678455 0.137613 -0.0160508 -0.235826 0.0344031 0.0312437 -0.0845583 0. 0.0288462 -0.0302673 0.00688063 0.00443884 -0.0268103 -0.0412838 -0.000426133 0.0857668 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11<br class="">[0] 1.18171 0.0270594 -0.055045 1.29651 -0.0821157 0.275225 1.1468 -0.0675282 0.11009 -0.637271 0.141058 -0.137613 -2.37741 -0.0649437 -0.22018 -0.588378 0.24647 0.0275225 -0.140937 -0.00838243 0.00688063 -0.0175533 -0.09 0. -0.16373 -0.0747355 -0.0344031 0.300255 -0.026882 0.0275225 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0.<br class="">[0] -0.0093323 0.360043 0.0285918 -0.0821157 0.585404 -0.0263191 -0.205724 0.149643 0.0652389 0.141058 -0.254263 0.0452109 0.011448 -0.592598 -0.0279137 0.344666 -0.171351 -0.0207062 0.00616654 -0.0212853 -0.0115868 -0.06 -0.0614365 -0.0192308 -0.104736 -0.0790071 -0.0335691 -0.041431 0.084851 0.000284088 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0.<br class="">[0] 0.055045 0.0297282 0.234796 0.275225 -0.0263191 0.526019 0.165135 0.0658071 0.288099 -0.137613 0.0452109 -0.252027 -0.33027 -0.0418706 -0.660001 -0.0275225 -0.00845384 -0.114921 -0.00688063 -0.0117288 -0.0225723 0. -0.0288462 -0.0175533 -0.0344031 -0.0239537 -0.0674185 0.0412838 0.000426133 0.085579 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11<br class="">[0] 1.18146 -0.0965489 -0.165135 1.1468 -0.205724 0.165135 3.70665 0.626591 3.1198e-14 -2.37741 0.0332522 -0.275225 -2.44501 -0.417727 4.66207e-17 -2.39586 -0.148706 0.275225 0.283843 0.0476669 0.0137613 0.00972927 0.06 0. 0.288268 0.0567649 -0.0137613 0.601523 0.0444318 -1.2387e-17 4.17288e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0.<br class="">[0] 0.00525527 0.270936 -0.0658071 -0.0675282 0.149643 0.0658071 0.626591 1.29259 -0.02916 -0.0867478 -0.592598 -0.0413024 -0.417727 -0.829208 6.46318e-18 -0.268706 -0.657189 0.0413024 0.03402 0.0715157 0.0179272 0.04 0.0340524 1.77708e-18 0.0704117 0.0870061 0.0112328 0.0644318 0.17325 -1.41666e-19 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0.<br class="">[0] -0.11009 -0.0652389 0.322754 0.11009 0.0652389 0.288099 3.12405e-14 -0.02916 1.21876 -0.275225 -0.0284819 -0.660001 9.50032e-17 9.55728e-18 -0.727604 0.275225 0.0284819 -0.678455 0.055045 0.0279687 0.0250605 0. 1.71863e-18 0.00972927 -0.055045 0.00119132 0.0294863 -1.47451e-17 -1.90582e-19 0.172172 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11<br class="">[0] -0.588378 0.32647 0.0275225 -0.637271 0.141058 -0.137613 -2.37741 -0.0867478 -0.275225 3.68138 0.0265907 3.13395e-14 1.1468 -0.107528 0.11009 1.18171 0.00886356 -3.13222e-14 -1.06248 -0.175069 0.158254 0.00657075 -0.03 0. 0.152747 -0.00526446 0.0344031 -1.50368 -0.0983732 0.0825675 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0.<br class="">[0] 0.264666 -0.171351 -0.0207062 0.141058 -0.254263 0.0452109 0.0332522 -0.592598 -0.0284819 0.0265907 1.20415 -0.0932626 -0.165724 0.149643 0.0524184 0.00886356 0.360043 0.0419805 -0.131422 -0.326529 0.0132913 -0.02 0.0229976 -0.00641026 -0.0152645 0.0405681 -0.00489246 -0.14202 -0.432665 0.000852265 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0.<br class="">[0] -0.0275225 -0.00845384 -0.114921 -0.137613 0.0452109 -0.252027 -0.275225 -0.0413024 -0.660001 3.13785e-14 -0.0932626 1.19349 0.165135 0.0786276 0.288099 -3.12866e-14 0.0163395 0.234796 0.116971 0.0128652 -0.322147 0. -0.00961538 0.00657075 0.0344031 -0.00168733 0.0564359 0.123851 0.0012784 -0.430298 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11<br class="">[0] -2.39586 -0.206902 0.33027 -2.37741 0.011448 -0.33027 -2.44501 -0.417727 6.38053e-17 1.1468 -0.165724 0.165135 4.88671 0.435454 0. 1.18146 -0.0565489 -0.165135 0.307839 0.0658628 -0.0412838 -0.00807774 0.18 0. 0.303413 0.038569 0.0412838 -0.599871 0.115568 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0.<br class="">[0] -0.210511 -0.657189 0.0418706 -0.0649437 -0.592598 -0.0418706 -0.417727 -0.829208 6.30468e-18 -0.107528 0.149643 0.0786276 0.435454 1.64686 0. -0.0347447 0.270936 -0.0786276 0.0613138 0.111396 -0.0100415 0.12 -0.0282721 0. 0.043118 0.0959058 0.0100415 0.175568 -0.167469 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0.<br class="">[0] 0.22018 0.0279137 -0.678455 -0.22018 -0.0279137 -0.660001 4.70408e-17 7.53383e-18 -0.727604 0.11009 0.0524184 0.288099 0. 0. 1.4519 -0.11009 -0.0524184 0.322754 -0.0275225 -0.00669434 0.0931634 0. 0. -0.00807774 0.0275225 0.00669434 0.0887375 0. 0. -0.17052 0. 0. 4.17288e-11 0. 0. 4.17288e-11 0. 0. 2.08644e-11 0. 0. 4.17288e-11 0. 0. 8.34577e-11 0. 0. 4.17288e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. 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0. 0.<br class="">[0] -0.0974804 -0.138996 0.0312437 -0.00838243 -0.0212853 -0.0117288 0.0476669 0.0715157 0.0279687 -0.175069 -0.326529 0.0128652 0.0658628 0.111396 -0.00669434 0.0174804 0.0412255 -0.00560268 0.112441 0.197005 -0.0360388 0.02 0.0244427 -0.00641026 -0.0283824 -0.045728 -0.00531859 0.0458628 0.0869535 -0.000284088 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. 1.56483e-11 0. 0. 2.60805e-12 0. 0. 2.60805e-12 0. 0. 2.60805e-12 0.<br class="">[0] 0.0344031 0.0408591 -0.0845583 0.00688063 -0.0115868 -0.0225723 0.0137613 0.0179272 0.0250605 0.158254 0.0132913 -0.322147 -0.0412838 -0.0100415 0.0931634 -0.0344031 -0.00239755 0.0566238 -0.103209 -0.0360388 0.190822 0. -0.00961538 0.00698363 0.00688063 -0.00197142 -0.029556 -0.0412838 -0.000426133 0.0861797 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. 1.56483e-11 0. 0. 2.60805e-12 0. 0. 2.60805e-12 0. 0. 2.60805e-12<br class="">[0] -0.0302673 -0.06 0. -0.0175533 -0.06 0. 0.00972927 0.04 0. 0.00657075 -0.02 0. -0.00807774 0.12 0. 0.00233276 -0.02 0. 0.00698363 0.02 0. 0.0279492 0. 0. 0.00274564 0.02 0. -0.000412882 -0.04 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. 2.60805e-12 0. 0. 1.56483e-11 0. 0. 2.60805e-12 0. 0. 2.60805e-12 0. 0.<br class="">[0] -0.09 -0.105935 0.0288462 -0.09 -0.0614365 -0.0288462 0.06 0.0340524 3.0201e-18 -0.03 0.0229976 -0.00961538 0.18 -0.0282721 0. -0.03 0.00816465 0.00961538 0.03 0.0244427 -0.00961538 0. 0.097822 0. 0.03 0.00960973 0.00961538 -0.06 -0.00144509 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. 2.60805e-12 0. 0. 1.56483e-11 0. 0. 2.60805e-12 0. 0. 2.60805e-12 0.<br class="">[0] 0. 0.0192308 -0.0302673 0. -0.0192308 -0.0175533 0. 1.8315e-18 0.00972927 0. -0.00641026 0.00657075 0. 0. -0.00807774 0. 0.00641026 0.00233276 0. -0.00641026 0.00698363 0. 0. 0.0279492 0. 0.00641026 0.00274564 0. 0. -0.000412882 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. 2.60805e-12 0. 0. 1.56483e-11 0. 0. 2.60805e-12 0. 0. 2.60805e-12<br class="">[0] -0.145175 0.00161757 0.00688063 -0.16373 -0.104736 -0.0344031 0.288268 0.0704117 -0.055045 0.152747 -0.0152645 0.0344031 0.303413 0.043118 0.0275225 -1.0575 -0.0540894 -0.116971 -0.14792 -0.0283824 0.00688063 0.00274564 0.03 0. 0.466478 0.0442066 0.103209 0.300667 0.013118 0.0275225 -1.56483e-11 0. 0. -1.04322e-11 0. 0. -1.04322e-11 0. 0. -1.56483e-11 0. 0. -1.56483e-11 0. 0. -1.04322e-11 0. 0. 2.60805e-12 0. 0. 2.60805e-12 0. 0. 1.56483e-11 0. 0. 2.60805e-12 0. 0.<br class="">[0] -0.00383346 -0.0361182 0.00443884 -0.0747355 -0.0790071 -0.0239537 0.0567649 0.0870061 0.00119132 -0.00526446 0.0405681 -0.00168733 0.038569 0.0959058 0.00669434 -0.0704425 -0.309066 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-6.64472e-10 0. 0. -6.64472e-10 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. -9.96708e-10 0. 0. 1.66118e-10 0. 0. 9.96708e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0.<br class="">[0] 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. 1.99342e-06 0. 0. -3.32236e-07 0. 0. -1.99342e-06 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. -9.96708e-10 0. 0. 1.66118e-10 0. 0. 9.96708e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10<br class="">[0] 1.99342e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -1.99342e-06 0. 0. -3.32236e-07 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 9.96708e-10 0. 0. 1.66118e-10 0. 0.<br class="">[0] 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -1.99342e-06 0. 0. -3.32236e-07 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 9.96708e-10 0. 0. 1.66118e-10 0.<br class="">[0] 0. 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -1.99342e-06 0. 0. -3.32236e-07 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 9.96708e-10 0. 0. 1.66118e-10<br class="">[0] 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -1.99342e-06 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 9.96708e-10 0. 0.<br class="">[0] 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -1.99342e-06 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 9.96708e-10 0.<br class="">[0] 0. 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.99342e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. 1.32894e-06 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -3.32236e-07 0. 0. -1.99342e-06 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -9.96708e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. -6.64472e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 1.66118e-10 0. 0. 9.96708e-10<br class="">[0]PETSC ERROR: #3 DMPlexMatSetClosure() line 5480 in /home/hartig/petsc/src/dm/impl<wbr class="">s/plex/plex.c<br class="">[0]PETSC ERROR: #4 DMPlexComputeJacobian_Internal<wbr class="">() line 2301 in /home/hartig/petsc/src/snes/ut<wbr class="">ils/dmplexsnes.c<br class="">[0]PETSC ERROR: #5 DMPlexTSComputeIJacobianFEM() line 233 in /home/hartig/petsc/src/ts/util<wbr class="">s/dmplexts.c<br class="">[0]PETSC ERROR: #6 TSComputeIJacobian_DMLocal() line 131 in /home/hartig/petsc/src/ts/util<wbr class="">s/dmlocalts.c<br class="">[0]PETSC ERROR: #7 TSComputeIJacobian() line 882 in /home/hartig/petsc/src/ts/inte<wbr class="">rface/ts.c<br class="">[0]PETSC ERROR: #8 SNESTSFormJacobian_Theta() line 515 in /home/hartig/petsc/src/ts/impl<wbr class="">s/implicit/theta/theta.c<br class="">[0]PETSC ERROR: #9 SNESTSFormJacobian() line 5044 in /home/hartig/petsc/src/ts/inte<wbr class="">rface/ts.c<br class="">[0]PETSC ERROR: #10 SNESComputeJacobian() line 2276 in /home/hartig/petsc/src/snes/in<wbr class="">terface/snes.c<br class="">[0]PETSC ERROR: #11 SNESSolve_NEWTONLS() line 222 in /home/hartig/petsc/src/snes/im<wbr class="">pls/ls/ls.c<br class="">[0]PETSC ERROR: #12 SNESSolve() line 3967 in /home/hartig/petsc/src/snes/in<wbr class="">terface/snes.c<br class="">[0]PETSC ERROR: #13 TS_SNESSolve() line 171 in /home/hartig/petsc/src/ts/impl<wbr class="">s/implicit/theta/theta.c<br class="">[0]PETSC ERROR: #14 TSStep_Theta() line 211 in /home/hartig/petsc/src/ts/impl<wbr class="">s/implicit/theta/theta.c<br class="">[0]PETSC ERROR: #15 TSStep() line 3809 in /home/hartig/petsc/src/ts/inte<wbr class="">rface/ts.c<br class=""><br class=""></blockquote></div><br class=""></div></div></div></blockquote></div><br class=""></div></div></div></blockquote></div><br class=""><br clear="all" class=""><div class=""><br class=""></div>--<span class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344Apple-converted-space"> </span><br class=""><div class="m_-4772015861371070217m_557368921975263504m_-9074427277652872344gmail_signature" data-smartmail="gmail_signature">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br class="">-- Norbert Wiener</div></div></div></div></blockquote></div><br class=""></div></div></div></div></div></blockquote></div><br class=""></div></div></blockquote></div><br class=""></div></div></div><br class=""></blockquote></div><br class=""><br clear="all" class=""><div class=""><br class=""></div>--<span class="m_-4772015861371070217Apple-converted-space"> </span><br class=""><div class="m_-4772015861371070217gmail_signature" data-smartmail="gmail_signature">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br class="">-- Norbert Wiener</div></div></div></div></blockquote></div><br class=""></div></div></div></div></blockquote></div><br class=""><br clear="all" class=""><div class=""><br class=""></div>--<span class="Apple-converted-space"> </span><br class=""><div class="gmail_signature" data-smartmail="gmail_signature">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br class="">-- Norbert Wiener</div></div></div></div></blockquote></div><br class=""></body></html>