<div dir="ltr"><div class="gmail_extra"><div class="gmail_quote">On Thu, Jan 5, 2017 at 2:37 AM, Klaij, Christiaan <span dir="ltr"><<a href="mailto:C.Klaij@marin.nl" target="_blank">C.Klaij@marin.nl</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Satish, Matt<br>
<br>
Our sysadmin tells me Scientific Linux is still busy with the<br>
RedHat 7.3 update, so yes, this is a partial update somewhere<br>
between 7.2 and 7.3...<br>
<br>
No luck with the quotes on my system, but the option<br>
--with-shared-libraries=0 does work! make test gives:<br>
<br>
Running test examples to verify correct installation<br>
Using PETSC_DIR=/projects/<wbr>developers/cklaij/ReFRESCO/<wbr>Dev/trunk/Libs/install/petsc-<wbr>3.7.4 and PETSC_ARCH=<br>
C/C++ example src/snes/examples/tutorials/<wbr>ex19 run successfully with 1 MPI process<br>
C/C++ example src/snes/examples/tutorials/<wbr>ex19 run successfully with 2 MPI processes<br>
Fortran example src/snes/examples/tutorials/<wbr>ex5f run successfully with 1 MPI process<br>
Completed test examples<br>
<br>
I've also tested the standalone program of metis, that works too:<br>
<br>
$ ./gpmetis<br>
Missing parameters.<br>
Usage: gpmetis [options] <filename> <nparts><br>
use 'gpmetis -help' for a summary of the options.<br>
<br>
So problem solved for now, thanks to you and Matt for all your<br>
help! On the long run I will go for Intel-17 on SL7.3.<br>
<br>
What worries me though is that a simple update (which happens all<br>
the time according to sysadmin) can have such a dramatic effect.<br></blockquote><div><br></div><div>I agree. It seems SL has broken the ability to use shared libraries with a simple point release.</div><div>It seems the robustness of all this process is a myth.</div><div><br></div><div> Thanks,</div><div><br></div><div> Matt</div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Thanks again,<br>
Chris<br>
<br>
<br>
<br>
dr. ir. Christiaan Klaij | CFD Researcher | Research & Development<br>
MARIN | T +31 317 49 33 44 | mailto:<a href="mailto:C.Klaij@marin.nl">C.Klaij@marin.nl</a> | <a href="http://www.marin.nl" rel="noreferrer" target="_blank">http://www.marin.nl</a><br>
<br>
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<br>
______________________________<wbr>__________<br>
From: Satish Balay <<a href="mailto:balay@mcs.anl.gov">balay@mcs.anl.gov</a>><br>
Sent: Wednesday, January 04, 2017 7:24 PM<br>
To: petsc-users<br>
Cc: Klaij, Christiaan<br>
Subject: Re: [petsc-users] problems after glibc upgrade to 2.17-157<br>
<br>
On Wed, 4 Jan 2017, Satish Balay wrote:<br>
<br>
> So I guess your best bet is static libraries..<br>
<br>
Or upgrade to intel-17 compilers.<br>
<br>
Satish<br>
<br>
-------<br>
<br>
[balay@el7 benchmarks]$ icc --version<br>
icc (ICC) 17.0.1 20161005<br>
Copyright (C) 1985-2016 Intel Corporation. All rights reserved.<br>
<br>
[balay@el7 benchmarks]$ icc sizeof.c -lifcore<br>
[balay@el7 benchmarks]$ ldd a.out<br>
linux-vdso.so.1 => (0x00007ffed4b02000)<br>
libifcore.so.5 => /soft/com/packages/intel/17/<wbr>u1/compilers_and_libraries_<wbr>2017.1.132/linux/compiler/lib/<wbr>intel64/libifcore.so.5 (0x00007f5a65430000)<br>
libm.so.6 => /lib64/libm.so.6 (0x00007f5a65124000)<br>
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007f5a64f0e000)<br>
libc.so.6 => /lib64/libc.so.6 (0x00007f5a64b4c000)<br>
libdl.so.2 => /lib64/libdl.so.2 (0x00007f5a64948000)<br>
libimf.so => /soft/com/packages/intel/17/<wbr>u1/compilers_and_libraries_<wbr>2017.1.132/linux/compiler/lib/<wbr>intel64/libimf.so (0x00007f5a6445c000)<br>
libsvml.so => /soft/com/packages/intel/17/<wbr>u1/compilers_and_libraries_<wbr>2017.1.132/linux/compiler/lib/<wbr>intel64/libsvml.so (0x00007f5a63550000)<br>
libintlc.so.5 => /soft/com/packages/intel/17/<wbr>u1/compilers_and_libraries_<wbr>2017.1.132/linux/compiler/lib/<wbr>intel64/libintlc.so.5 (0x00007f5a632e6000)<br>
/lib64/ld-linux-x86-64.so.2 (0x00007f5a65793000)<br>
[balay@el7 benchmarks]$ ./a.out<br>
long double : 16<br>
double : 8<br>
int : 4<br>
char : 1<br>
short : 2<br>
long : 8<br>
long long : 8<br>
int * : 8<br>
size_t : 8<br>
[balay@el7 benchmarks]$<br>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature" data-smartmail="gmail_signature">What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead.<br>-- Norbert Wiener</div>
</div></div>