Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Sat Jul 2 09:02:37 2016 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-debugging=0 --with-shared-libraries=0 --with-x=0 --with-ssl=0 --download-metis=1 --download-hdf5=1 --with-cxx=/opt/cray/pe/craype/2.5.5/bin/CC --with-cc=/opt/cray/pe/craype/2.5.5/bin/cc --with-fc=/opt/cray/pe/craype/2.5.5/bin/ftn --download-parmetis=1 --prefix=/global/cscratch1/sd/gpau/tough3/tough3-install/tpls Working directory: /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source Machine platform: ('Linux', 'cori05', '3.12.51-52.39-default', '#1 SMP Fri Jan 15 20:03:12 UTC 2016 (16f5bac)', 'x86_64', 'x86_64') Python version: 2.7.9 (default, Dec 21 2014, 11:02:59) [GCC] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/framework.py:834) TESTING: configureExternalPackagesDir from config.framework(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/framework.py:834) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/common/software/mercurial/3.8.3/bin/gdb...not found Checking for program /usr/common/software/cmake/3.3.2//bin/gdb...not found Checking for program /usr/common/software/darshan/3.0.1/bin/gdb...not found Checking for program /usr/common/usg/bin/gdb...not found Checking for program /usr/common/mss/bin/gdb...not found Checking for program /usr/common/nsg/bin/gdb...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/gdb...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/gdb...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/gdb...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/gdb...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/gdb...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/gdb...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/gdb...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/gdb...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/gdb...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/gdb...not found Checking for program /usr/syscom/nsg/sbin/gdb...not found Checking for program /usr/syscom/nsg/bin/gdb...not found Checking for program /opt/modules/3.2.6.7/bin/gdb...not found Checking for program /global/homes/g/gpau/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /usr/common/software/mercurial/3.8.3/bin/dbx...not found Checking for program /usr/common/software/cmake/3.3.2//bin/dbx...not found Checking for program /usr/common/software/darshan/3.0.1/bin/dbx...not found Checking for program /usr/common/usg/bin/dbx...not found Checking for program /usr/common/mss/bin/dbx...not found Checking for program /usr/common/nsg/bin/dbx...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/dbx...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/dbx...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/dbx...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/dbx...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/dbx...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/dbx...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/dbx...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/dbx...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/dbx...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/dbx...not found Checking for program /usr/syscom/nsg/sbin/dbx...not found Checking for program /usr/syscom/nsg/bin/dbx...not found Checking for program /opt/modules/3.2.6.7/bin/dbx...not found Checking for program /global/homes/g/gpau/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/bin/X11/dbx...not found Checking for program /usr/games/dbx...not found Checking for program /usr/lib/mit/bin/dbx...not found Checking for program /usr/lib/mit/sbin/dbx...not found Checking for program /opt/cray/pe/bin/dbx...not found Checking for program /global/homes/g/gpau/dbx...not found Checking for program /usr/common/software/mercurial/3.8.3/bin/xdb...not found Checking for program /usr/common/software/cmake/3.3.2//bin/xdb...not found Checking for program /usr/common/software/darshan/3.0.1/bin/xdb...not found Checking for program /usr/common/usg/bin/xdb...not found Checking for program /usr/common/mss/bin/xdb...not found Checking for program /usr/common/nsg/bin/xdb...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/xdb...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/xdb...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/xdb...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/xdb...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/xdb...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/xdb...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/xdb...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/xdb...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/xdb...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/xdb...not found Checking for program /usr/syscom/nsg/sbin/xdb...not found Checking for program /usr/syscom/nsg/bin/xdb...not found Checking for program /opt/modules/3.2.6.7/bin/xdb...not found Checking for program /global/homes/g/gpau/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/bin/X11/xdb...not found Checking for program /usr/games/xdb...not found Checking for program /usr/lib/mit/bin/xdb...not found Checking for program /usr/lib/mit/sbin/xdb...not found Checking for program /opt/cray/pe/bin/xdb...not found Checking for program /global/homes/g/gpau/xdb...not found Checking for program /usr/common/software/mercurial/3.8.3/bin/dsymutil...not found Checking for program /usr/common/software/cmake/3.3.2//bin/dsymutil...not found Checking for program /usr/common/software/darshan/3.0.1/bin/dsymutil...not found Checking for program /usr/common/usg/bin/dsymutil...not found Checking for program /usr/common/mss/bin/dsymutil...not found Checking for program /usr/common/nsg/bin/dsymutil...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/dsymutil...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/dsymutil...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/dsymutil...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/dsymutil...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/dsymutil...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/dsymutil...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/dsymutil...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/dsymutil...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/dsymutil...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/dsymutil...not found Checking for program /usr/syscom/nsg/sbin/dsymutil...not found Checking for program /usr/syscom/nsg/bin/dsymutil...not found Checking for program /opt/modules/3.2.6.7/bin/dsymutil...not found Checking for program /global/homes/g/gpau/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/bin/X11/dsymutil...not found Checking for program /usr/games/dsymutil...not found Checking for program /usr/lib/mit/bin/dsymutil...not found Checking for program /usr/lib/mit/sbin/dsymutil...not found Checking for program /opt/cray/pe/bin/dsymutil...not found Checking for program /global/homes/g/gpau/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/common/software/mercurial/3.8.3/bin/git...not found Checking for program /usr/common/software/cmake/3.3.2//bin/git...not found Checking for program /usr/common/software/darshan/3.0.1/bin/git...not found Checking for program /usr/common/usg/bin/git...not found Checking for program /usr/common/mss/bin/git...not found Checking for program /usr/common/nsg/bin/git...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/git...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/git...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/git...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/git...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/git...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/git...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/git...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/git...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/git...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/git...not found Checking for program /usr/syscom/nsg/sbin/git...not found Checking for program /usr/syscom/nsg/bin/git...not found Checking for program /opt/modules/3.2.6.7/bin/git...not found Checking for program /global/homes/g/gpau/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.8.5.6 ================================================================================ TEST configureMercurial from config.sourceControl(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/sourceControl.py:35) TESTING: configureMercurial from config.sourceControl(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/sourceControl.py:35) Find the Mercurial executable Checking for program /usr/common/software/mercurial/3.8.3/bin/hg...found Defined make macro "HG" to "hg" Executing: hg version -q stdout: Mercurial Distributed SCM (version 3.8.3) ================================================================================ TEST configureCLanguage from PETSc.options.languages(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 7 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "Jun, 05, 2016" #define PETSC_VERSION_GIT "v3.7.2" #define PETSC_VERSION_DATE_GIT "2016-06-05 12:07:54 -0500" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/petscclone.py:20) This is a tarball installation ================================================================================ TEST configureArchitecture from PETSc.options.arch(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/arch.py:25) TESTING: configureArchitecture from PETSc.options.arch(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-linux2-c-opt"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:74) TESTING: saveReconfigure from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:74) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:67) TESTING: cleanInstallDir from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:67) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:51) TESTING: configureInstallDir from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:51) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:87) TESTING: restoreReconfigure from PETSc.options.installDir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/installDir.py:87) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1592) TESTING: printEnvVariables from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1592) **** printenv **** CRAY_MPICH_BASEDIR=/opt/cray/pe/mpt/7.4.0/gni CRAY_LIBSCI_BASE_DIR=/opt/cray/pe/libsci/16.06.1 CPU=x86_64 PE_PETSC_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/petsc/3.7.0.0/complex/@PRGENV@/@PE_PETSC_DEFAULT_GENCOMPS@/@PE_PETSC_DEFAULT_TARGET@/lib/pkgconfig INTEL_PATH=/opt/intel/compilers_and_libraries PE_LIBSCI_GENCOMPILERS_CRAY_x86_64=8.3 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_mic_knl=85 HISTSIZE=1000 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_x86_64=150 CRAY_SHMEM_VER=7.4.0 CRAY_LIBSCI_VERSION=16.06.1 JAVA_HOME=/usr/lib64/jvm/java craype_already_loaded=0 PE_LIBSCI_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/16.06.1/@PRGENV@/@PE_LIBSCI_GENCOMPS@/@PE_LIBSCI_TARGET@/lib/pkgconfig FPATH=:/opt/cray/pe/modules/3.2.10.4/init/sh_funcs/no_redirect PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf-hdf5parallel/4.4.0/@PRGENV@/@PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig PE_HDF5_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5/1.8.16/@PRGENV@/@PE_HDF5_DEFAULT_GENCOMPS@/lib/pkgconfig XDG_SESSION_ID=706 PE_TRILINOS_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/trilinos/12.6.3.0/@PRGENV@/@PE_TRILINOS_DEFAULT_GENCOMPS@/@PE_TRILINOS_DEFAULT_TARGET@/lib/pkgconfig PE_SMA_DEFAULT_DIR_PGI_DEFAULT64=64 KSH_AUTOLOAD=1 PE_TPSL_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_SMA_DIR_CRAY_DEFAULT64=64 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_haswell=5.1 4.9 LESSOPEN=lessopen.sh %s CSHEDIT=emacs PE_TRILINOS_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 CRAY_UDREG_INCLUDE_OPTS=-I/opt/cray/udreg/2.3.2-4.6/include USER=gpau PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_x86_64=150 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1 4.9 JDK_HOME=/usr/lib64/jvm/java PE_LIBSCI_DEFAULT_GENCOMPS_INTEL_mic_knl=150 PE_HDF5_DEFAULT_GENCOMPS_GNU=51 49 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 CRAY_LIBSCI_DIR=/opt/cray/pe/libsci/16.06.1 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 JAVA_BINDIR=/usr/lib64/jvm/java/bin INFOPATH=/opt/intel/documentation_2016/en/debugger//gdb-ia/info/:/opt/intel/documentation_2016/en/debugger//gdb-mic/info/:/opt/intel/documentation_2016/en/debugger//gdb-igfx/info/ PE_LIBSCI_DEFAULT_OMP_REQUIRES= PE_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/netcdf/4.4.0/@PRGENV@/@PE_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_HDF5_DEFAULT_GENCOMPILERS_INTEL=15.0 14.0 PE_MPICH_DEFAULT_FIXED_PRGENV=INTEL PE_HDF5_PARALLEL_DEFAULT_FIXED_PRGENV=CRAY PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_sandybridge=83 TMPDIR=/global/cscratch1/sd/gpau PE_PKGCONFIG_PRODUCTS_DEFAULT=PE_PAPI PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_INTEL=150 140 PE_LIBSCI_DEFAULT_OMP_REQUIRES_openmp=_mp XDG_DATA_DIRS=/usr/share PE_HDF5_PARALLEL_DEFAULT_GENCOMPS_GNU=51 49 _LMFILES_=/opt/modulefiles/modules/3.2.6.7:/usr/syscom/nsg/modulefiles/nsg/1.2.0:/opt/cray/pe/modulefiles/modules/3.2.10.4:/opt/modulefiles/intel/16.0.3.210:/opt/cray/pe/craype/2.5.5/modulefiles/craype-network-aries:/opt/cray/pe/modulefiles/craype/2.5.5:/opt/cray/pe/modulefiles/cray-libsci/16.06.1:/opt/cray/ari/modulefiles/udreg/2.3.2-4.6:/opt/cray/ari/modulefiles/ugni/6.0.12-2.1:/opt/cray/pe/ari/modulefiles/pmi/5.0.10-1.0000.11050.0.0.ari:/opt/cray/ari/modulefiles/dmapp/7.1.0-12.37:/opt/cray/ari/modulefiles/gni-headers/5.0.7-3.1:/opt/cray/ari/modulefiles/xpmem/0.1-4.5:/opt/cray/ari/modulefiles/job/1.5.5-3.58:/opt/cray/ari/modulefiles/dvs/2.5_0.9.0-2.155:/opt/cray/ari/modulefiles/alps/6.1.3-17.12:/opt/cray/ari/modulefiles/rca/1.0.0-6.21:/opt/cray/pe/modulefiles/atp/2.0.2:/opt/cray/pe/modulefiles/PrgEnv-intel/6.0.3:/opt/cray/pe/craype/2.5.5/modulefiles/craype-haswell:/opt/cray/pe/modulefiles/cray-shmem/7.4.0:/opt/cray/pe/modulefiles/cray-mpich/7.4.0:/usr/common/software/modulefiles/darshan/3.0.1:/usr/common/software/modulefiles/cmake/3.3.2:/usr/common/software/modulefiles/mercurial/3.8.3 MODULE_VERSION=3.2.10.4 LIBSCI_VERSION=16.06.1 CRAY_XPMEM_INCLUDE_OPTS=-I/opt/cray/xpmem/0.1-4.5/include PE_LIBSCI_GENCOMPS_GNU_mic_knl=51 FC=/opt/cray/pe/craype/2.5.5/bin/ftn PE_MPICH_DEFAULT_GENCOMPS_GNU=51 49 HOME=/global/homes/g/gpau CRAY_SHMEM_BASEDIR=/opt/cray/pe/mpt/7.4.0/gni BASH_ENV=/global/homes/g/gpau/.bashrc PE_LIBSCI_GENCOMPS_INTEL_x86_64=150 PE_GA_DEFAULT_FIXED_PRGENV=CRAY INTEL DVS_MAXNODES=1__ PE_GA_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_FORTRAN_PKGCONFIG_LIBS=mpichf90 MODULEPATH=/opt/cray/pe/ari/modulefiles:/opt/cray/ari/modulefiles:/opt/cray/pe/craype/2.5.5/modulefiles:/opt/cray/pe/modulefiles:/opt/cray/modulefiles:/opt/modulefiles:/usr/common/software/modulefiles:/usr/syscom/nsg/modulefiles:/usr/syscom/nsg/opt/modulefiles:/usr/common/das/modulefiles:/usr/common/ftg/modulefiles:/opt/cray/craype/default/modulefiles PE_PAPI_DEFAULT_ACCEL_LIBS_nvidia35=,-lcupti,-lcudart,-lcuda NNTPSERVER=news ATP_IGNORE_SIGTERM=1 HOST=cori05 PE_NETCDF_HDF5PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU BASH_FUNC_module()=() { eval `/opt/cray/pe/modules/3.2.10.4/bin/modulecmd bash $*` } PE_MPICH_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 INPUTRC=/etc/inputrc PE_MPICH_MODULE_NAME=cray-mpich MAN_POSIXLY_CORRECT=1 MFLAGS=-w GDB_CROSS=/opt/intel/debugger_2016/gdb/intel64_mic/bin/gdb-mic PE_FFTW_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/fftw/3.3.4.8/@PE_FFTW_DEFAULT_TARGET@/lib/pkgconfig PE_PETSC_DEFAULT_GENCOMPS_INTEL_haswell=150 NERSC_HOST=cori MAKELEVEL=3 INTEL_MINOR_VERSION=3.210 PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.7.0/@PRGENV@/@PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS@/lib/pkgconfig JRE_HOME=/usr/lib64/jvm/java/jre PE_TPSL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/16.06.1/@PRGENV@/@PE_TPSL_DEFAULT_GENCOMPS@/@PE_TPSL_DEFAULT_TARGET@/lib/pkgconfig PE_SMA_COMPFLAG= PE_HDF5_DEFAULT_GENCOMPS_INTEL=150 140 PE_LIBSCI_DEFAULT_GENCOMPS_GNU_x86_64=51 49 PE_LIBSCI_REQUIRED_PRODUCTS=PE_MPICH PE_HDF5_DEFAULT_FIXED_PRGENV=CRAY LIBGL_ALWAYS_INDIRECT=1 PE_SMA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.4.0/gni/sma@PE_SMA_DEFAULT_DIR_DEFAULT64@/lib64/pkgconfig MAKEFLAGS=w PE_TPSL_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_MPICH_PKGCONFIG_VARIABLES=PE_MPICH_NV_LIBS_@accelerator@:PE_MPICH_MULTITHREADED_LIBS_@multithreaded@ LIBSCI_BASE_DIR=/opt/cray/pe/libsci/16.06.1 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 ATP_POST_LINK_OPTS=-Wl,-L/opt/cray/pe/atp/2.0.2/libApp/ COLORTERM=1 PE_SMA_FORTRAN_PKGCONFIG_LIBS=smaf PE_TPSL_64_DEFAULT_GENCOMPS_GNU_sandybridge=51 49 PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/hdf5-parallel/1.8.16/@PRGENV@/@PE_HDF5_PARALLEL_DEFAULT_GENCOMPS@/lib/pkgconfig DAALROOT=/opt/intel/compilers_and_libraries_2016.3.210/linux/daal PE_GA_DEFAULT_VOLATILE_PRGENV=GNU OLDPWD=/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source LOADEDMODULES=modules/3.2.6.7:nsg/1.2.0:modules/3.2.10.4:intel/16.0.3.210:craype-network-aries:craype/2.5.5:cray-libsci/16.06.1:udreg/2.3.2-4.6:ugni/6.0.12-2.1:pmi/5.0.10-1.0000.11050.0.0.ari:dmapp/7.1.0-12.37:gni-headers/5.0.7-3.1:xpmem/0.1-4.5:job/1.5.5-3.58:dvs/2.5_0.9.0-2.155:alps/6.1.3-17.12:rca/1.0.0-6.21:atp/2.0.2:PrgEnv-intel/6.0.3:craype-haswell:cray-shmem/7.4.0:cray-mpich/7.4.0:darshan/3.0.1:cmake/3.3.2:mercurial/3.8.3 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 PE_PETSC_DEFAULT_GENCOMPS_INTEL_sandybridge=150 PE_PAPI_DEFAULT_PKGCONFIG_VARIABLES=PE_PAPI_ACCEL_LIBS_@accelerator@ CRAY_LD_LIBRARY_PATH=/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib:/opt/cray/pe/mpt/7.4.0/gni/sma/lib64:/opt/cray/pe/mpt/7.4.0/gni/sma64/lib64:/opt/cray/rca/1.0.0-6.21/lib64:/opt/cray/alps/6.1.3-17.12/lib64:/opt/cray/xpmem/0.1-4.5/lib64:/opt/cray/dmapp/7.1.0-12.37/lib64:/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64:/opt/cray/ugni/6.0.12-2.1/lib64:/opt/cray/udreg/2.3.2-4.6/lib64:/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib PE_TRILINOS_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PE_LIBSCI_DEFAULT_VOLATILE_PRGENV=CRAY GNU INTEL PE_PAPI_DEFAULT_ACCEL_LIBS= LESS=-M -I -R PE_TPSL_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1 4.9 PE_LIBSCI_GENCOMPILERS_GNU_x86_64=5.1 4.9 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 CRAYPE_NETWORK_TARGET=aries USERMODULES=/opt/cray/pe/modules/3.2.10.4/init/.usermodules:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi:acml:alps:apprentice:apprentice2:atp:blcr:cce:chapel:cray-ccdb:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-lgdb:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-compat:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-snplauncher:cray-tpsl:cray-trilinos:craypat:craype:craypkg-gen:cudatoolkit:ddt:fftw:ga:gcc:hdf5:hdf5-parallel:intel:iobuf:java:lgdb:libfast:libsci_acc:mpich1:netcdf:netcdf-hdf5parallel:netcdf-nofsync:netcdf-nofsync-hdf5parallel:ntk:onesided:papi:parallel-netcdf:pathscale:perftools:perftools-lite:petsc:petsc-complex:pgi:pmi:stat:totalview:tpsl:trilinos:xt-asyncpe:xt-craypat:xt-lgdb:xt-libsci:xt-mpich2:xt-mpt:xt-papi:xt-shmem:xt-totalview:/etc/opt/cray/pe/modules/site_usermodules XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB CRAY_CPU_TARGET=haswell PE_PKGCONFIG_PRODUCTS=PE_MPICH:PE_SMA:PE_LIBSCI CRAY_MPICH2_DIR=/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0 PE_LIBSCI_MODULE_NAME=cray-libsci/16.06.1 PE_FFTW_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH PELOCAL_PRGENV=true PE_TPSL_DEFAULT_GENCOMPS_INTEL_x86_64=150 TARGETMODULES=/opt/cray/pe/modules/3.2.10.4/init/.targetmodules:craype-abudhabi:craype-abudhabi-cu:craype-accel-host:craype-accel-nvidia20:craype-accel-nvidia30:craype-accel-nvidia35:craype-barcelona:craype-broadwell:craype-haswell:craype-hugepages128K:craype-hugepages128M:craype-hugepages16M:craype-hugepages256M:craype-hugepages2M:craype-hugepages32M:craype-hugepages4M:craype-hugepages512K:craype-hugepages512M:craype-hugepages64M:craype-hugepages8M:craype-intel-knc:craype-interlagos:craype-interlagos-cu:craype-istanbul:craype-ivybridge:craype-mc12:craype-mc8:craype-mic-knl:craype-network-aries:craype-network-gemini:craype-network-infiniband:craype-network-none:craype-network-seastar:craype-sandybridge:craype-shanghai:craype-target-compute_node:craype-target-local_host:craype-target-native:craype-xeon:xtpe-barcelona:xtpe-interlagos:xtpe-interlagos-cu:xtpe-istanbul:xtpe-mc12:xtpe-mc8:xtpe-network-gemini:xtpe-network-seastar:xtpe-shanghai:xtpe-target-native:xtpe-xeon:/etc/opt/cray/pe/modules/site_targetmodules PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_mic_knl=85 CRAY_DMAPP_POST_LINK_OPTS=-L/opt/cray/dmapp/7.1.0-12.37/lib64 LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.xz=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32: PE_SMA_DEFAULT_COMPFLAG= PE_PETSC_DEFAULT_GENCOMPS_GNU_x86_64=51 49 JAVA_ROOT=/usr/lib64/jvm/java PE_TPSL_DEFAULT_GENCOMPS_CRAY_sandybridge=83 CPATH=/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/include:/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/include:/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/include:/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/include MODULE_VERSION_STACK=3.2.10.4 PE_MPICH_PKGCONFIG_LIBS=mpich SHLVL=4 CRAY_ALPS_INCLUDE_OPTS=-I/opt/cray/alps/6.1.3-17.12/include PE_MPICH_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_PKGCONFIG_VARIABLES=PE_LIBSCI_OMP_REQUIRES_@openmp@ DISPLAY=localhost:39.0 CRAY_XPMEM_POST_LINK_OPTS=-L/opt/cray/xpmem/0.1-4.5/lib64 PETSC_DIR=/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source PE_PETSC_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_TPSL CLASSPATH=/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/daal.jar XTPE_NETWORK_TARGET=aries PE_LIBSCI_GENCOMPS_INTEL_mic_knl=150 PE_PETSC_DEFAULT_GENCOMPS_INTEL_x86_64=150 LS_OPTIONS=-N --color=none -T 0 LIBRARY_PATH=/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64:/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4:/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin PE_HDF5_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 CRAY_SHMEM_ROOTDIR=/opt/cray/pe/mpt/7.4.0 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_sandybridge=150 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_x86_64=83 INTEL_LICENSE_FILE=28518@dmv1.nersc.gov:28518@dmv.nersc.gov IPPROOT=/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp PE_FFTW_DEFAULT_TARGET_interlagos=interlagos MPM_LAUNCHER=/opt/intel/debugger_2016/mpm/mic/bin/start_mpm.sh PE_TRILINOS_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1 4.9 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1 4.9 PE_MPICH_DEFAULT_GENCOMPS_CRAY=83 PE_PETSC_DEFAULT_GENCOMPS_CRAY_sandybridge=83 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 ATP_HOME=/opt/cray/pe/atp/2.0.2 DVS_INCLUDE_OPTS=-I/opt/cray/dvs/2.5_0.9.0-2.155/include PE_TPSL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI intel_already_loaded=0 CRAY_UGNI_POST_LINK_OPTS=-L/opt/cray/ugni/6.0.12-2.1/lib64 SHMEM_ABORT_ON_ERROR=1 PKG_CONFIG_PATH_DEFAULT=/opt/cray/pe/papi/5.4.3.2/lib64/pkgconfig PE_SMA_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.4.0/gni/sma@PE_SMA_DIR_DEFAULT64@/lib64/pkgconfig PE_PARALLEL_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_CXX_PKGCONFIG_LIBS=mpichcxx PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_mic_knl=5.1 SSH_TTY=/dev/pts/34 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1 4.9 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 CVS_RSH=ssh PE_PARALLEL_NETCDF_DEFAULT_FIXED_PRGENV=CRAY INTEL PE_FFTW_DEFAULT_TARGET_broadwell=broadwell I_MPI_ROOT=/opt/intel/compilers_and_libraries_2016.3.210/linux/mpi PE_MPICH_GENCOMPILERS_GNU=5.1 4.9 NSG_HOME=/usr/syscom/nsg PE_TPSL_DEFAULT_GENCOMPS_GNU_x86_64=51 49 SSH_CLIENT=128.55.160.242 45153 22 LOGNAME=gpau PE_MPICH_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.4.0/gni/mpich-@PRGENV@@PE_MPICH_DEFAULT_DIR_DEFAULT64@/@PE_MPICH_DEFAULT_GENCOMPS@/lib/pkgconfig PATH=/usr/common/software/mercurial/3.8.3/bin:/usr/common/software/cmake/3.3.2//bin:/usr/common/software/darshan/3.0.1/bin:/usr/common/usg/bin:/usr/common/mss/bin:/usr/common/nsg/bin:/opt/cray/pe/mpt/7.4.0/gni/bin:/opt/cray/rca/1.0.0-6.21/bin:/opt/cray/alps/6.1.3-17.12/sbin:/opt/cray/job/1.5.5-3.58/bin:/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin:/opt/cray/pe/craype/2.5.5/bin:/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64:/opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin:/opt/intel/debugger_2016/gdb/intel64_mic/bin:/opt/cray/pe/modules/3.2.10.4/bin:/usr/syscom/nsg/sbin:/usr/syscom/nsg/bin:/opt/modules/3.2.6.7/bin:/global/homes/g/gpau/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/cray/pe/bin PE_PETSC_DEFAULT_GENCOMPS_CRAY_interlagos=83 PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_haswell=150 PE_HDF5_PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH CRAY_PRE_COMPILE_OPTS=-hnetwork=aries INTEL_PYTHONHOME=/opt/intel/debugger_2016/python/intel64/ MPICH_DIR=/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 PE_LIBSCI_OMP_REQUIRES= PE_INTEL_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.7.0/INTEL/15.0/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.4.0/INTEL/15.0/lib/pkgconfig:/opt/cray/pe/netcdf/4.4.0/INTEL/15.0/lib/pkgconfig:/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.6/INTEL/15.0/lib/pkgconfig GDBSERVER_MIC=/opt/intel/debugger_2016/gdb/targets/mic/bin/gdbserver PE_MPICH_FIXED_PRGENV=INTEL PE_LIBSCI_GENCOMPS_GNU_x86_64=51 49 PE_SMA_DEFAULT_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ PE_PKGCONFIG_LIBS=darshan-runtime:mpich:sma:AtpSigHandler:cray-rca:libsci_mpi:libsci PE_TRILINOS_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.5 PE_SMA_DEFAULT_DIR_CRAY_DEFAULT64=64 PE_LIBSCI_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1 4.9 CRAYPE_DIR=/opt/cray/pe/craype/2.5.5 INTEL_MAJOR_VERSION=16.0 PE_MPICH_TARGET_VAR_nvidia35=-lcudart PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 CRAY_PMI_INCLUDE_OPTS=-I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include MANPATH=/usr/common/software/cmake/3.3.2//man:/usr/common/usg/man:/usr/common/mss/man:/usr/common/nsg/man:/opt/cray/pe/mpt/7.4.0/gni/man/mpich:/opt/cray/pe/mpt/7.4.0/gni/man/shmem:/opt/cray/pe/atp/2.0.2/man:/opt/cray/alps/6.1.3-17.12/man:/opt/cray/job/1.5.5-3.58/man:/opt/cray/pe/libsci/16.06.1/man:/opt/cray/pe/man/csmlversion:/opt/cray/pe/craype/2.5.5/man:/opt/intel/man/common:/opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/man:/opt/intel/documentation_2016/en/debugger//gdb-ia/man/:/opt/intel/documentation_2016/en/debugger//gdb-mic/man/:/opt/intel/documentation_2016/en/debugger//gdb-igfx/man/:/opt/cray/pe/modules/3.2.10.4/share/man:/usr/syscom/nsg/man:/opt/modules/3.2.6.7/man:/usr/local/man:/usr/share/man:/opt/cray/share/man:/opt/cray/pe/man:/opt/cray/share/man PE_TPSL_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1 4.9 PROFILEREAD=true PE_PETSC_DEFAULT_GENCOMPS_GNU_sandybridge=51 49 PE_NETCDF_HDF5PARALLEL_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5_PARALLEL:PE_MPICH PE_TPSL_64_DEFAULT_GENCOMPS_GNU_interlagos=51 49 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_interlagos=5.1 4.9 PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 MKLROOT=/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl HOSTNAME=cori05 PE_FFTW_DEFAULT_TARGET_mic_knl=mic_knl PE_LIBSCI_PKGCONFIG_LIBS=libsci_mpi:libsci PE_TPSL_DEFAULT_GENCOMPS_INTEL_sandybridge=150 MACHTYPE=x86_64-suse-linux PE_NETCDF_HDF5PARALLEL_DEFAULT_FIXED_PRGENV=CRAY INTEL CRAY_MPICH_DIR=/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0 MINICOM=-c on PE_TPSL_64_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_LIBSCI PE_MPICH_NV_LIBS= PE_SMA_PKGCONFIG_LIBS=sma PKGCONFIG_ENABLED=1 PE_LIBSCI_GENCOMPILERS_CRAY_mic_knl=8.5 PE_TPSL_64_DEFAULT_GENCOMPS_GNU_haswell=51 49 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_TRILINOS_DEFAULT_GENCOMPS_GNU_x86_64=51 49 DVS_VERSION=0.9.0 PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 LIBRARYMODULES=/opt/cray/pe/modules/3.2.10.4/init/.librarymodules:acml:alps:cray-dwarf:cray-fftw:cray-ga:cray-hdf5:cray-hdf5-parallel:cray-libsci:cray-libsci_acc:cray-mpich:cray-mpich-abi:cray-mpich2:cray-netcdf:cray-netcdf-hdf5parallel:cray-parallel-netcdf:cray-petsc:cray-petsc-complex:cray-shmem:cray-tpsl:cray-trilinos:cudatoolkit:fftw:ga:hdf5:hdf5-parallel:iobuf:libfast:netcdf:netcdf-hdf5parallel:ntk:onesided:papi:petsc:petsc-complex:pmi:tpsl:trilinos:xt-libsci:xt-mpich2:xt-mpt:xt-papi:/etc/opt/cray/pe/modules/site_librarymodules MODULESHOME=/opt/cray/pe/modules/3.2.10.4 PE_LIBSCI_DEFAULT_GENCOMPILERS_CRAY_x86_64=8.3 PE_TPSL_DEFAULT_GENCOMPS_CRAY_haswell=83 PE_PETSC_DEFAULT_GENCOMPS_CRAY_haswell=83 PE_MPICH_NV_LIBS_nvidia35=-lcudart PE_LIBSCI_GENCOMPS_CRAY_x86_64=83 PE_MPICH_CXX_PKGCONFIG_LIBS=mpichcxx XDG_CONFIG_DIRS=/etc/xdg PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 PE_NETCDF_DEFAULT_GENCOMPS_GNU=51 49 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_haswell=5.1 4.9 PAGER=less NO_AT_BRIDGE=1 PE_GA_DEFAULT_GENCOMPS_GNU=51 49 LIBGL_DEBUG=quiet CRAY_PMI_POST_LINK_OPTS=-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 ATP_MRNET_COMM_PATH=/opt/cray/pe/atp/2.0.2/libexec/atp_mrnet_commnode_wrapper CRAY_MPICH2_VER=7.4.0 PE_LIBSCI_GENCOMPILERS_INTEL_x86_64=15.0 LD_LIBRARY_PATH=/usr/common/software/darshan/3.0.1/lib:/opt/cray/job/1.5.5-3.58/lib64:/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin:/opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/lib:/opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64:/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64:/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64:/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4:/opt/intel/debugger_2016/libipt/intel64/lib:/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin:/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin:/usr/syscom/nsg/lib FORT_BUFFERED=yes G_BROKEN_FILENAMES=1 PE_HDF5_PARALLEL_DEFAULT_GENCOMPILERS_INTEL=15.0 14.0 CC=/opt/cray/pe/craype/2.5.5/bin/cc PE_TPSL_DEFAULT_GENCOMPS_INTEL_interlagos=150 PE_TPSL_64_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1 4.9 PE_TPSL_DEFAULT_GENCOMPS_GNU_sandybridge=51 49 PE_LIBSCI_VOLATILE_PRGENV=CRAY GNU INTEL GPG_TTY=/dev/pts/34 FROM_HEADER= LESSCLOSE=lessclose.sh %s %s PE_MPICH_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.4.0/gni/mpich-@PRGENV@@PE_MPICH_DIR_DEFAULT64@/@PE_MPICH_GENCOMPS@/lib/pkgconfig CRAY_ALPS_POST_LINK_OPTS=-L/opt/cray/alps/6.1.3-17.12/lib64 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 PE_MPICH_DEFAULT_GENCOMPILERS_CRAY=8.3 MORE=-sl PE_PETSC_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 PE_GA_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/ga/5.3.0.6/@PRGENV@/@PE_GA_DEFAULT_GENCOMPS@/lib/pkgconfig HOSTTYPE=x86_64 CRAYPE_VERSION=2.5.5 PE_SMA_COMPFLAG_GNU=-fcray-pointer XDG_RUNTIME_DIR=/run/user/43040 TERM=xterm PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 PE_LIBSCI_GENCOMPS_CRAY_mic_knl=85 PYTHONPATH=/usr/common/software/mercurial/3.8.3/lib64/python2.6/site-packages CRAY_GNI_HEADERS_INCLUDE_OPTS=-I/opt/cray/gni-headers/5.0.7-3.1/include PE_PKG_CONFIG_PATH=/opt/cray/pe/cti/1.0.1/lib/pkgconfig PE_CRAY_DEFAULT_FIXED_PKGCONFIG_PATH=/opt/cray/pe/parallel-netcdf/1.7.0/CRAY/8.3/lib/pkgconfig:/opt/cray/pe/netcdf-hdf5parallel/4.4.0/CRAY/8.3/lib/pkgconfig:/opt/cray/pe/netcdf/4.4.0/CRAY/8.3/lib/pkgconfig:/opt/cray/pe/hdf5-parallel/1.8.16/CRAY/8.3/lib/pkgconfig:/opt/cray/pe/hdf5/1.8.16/CRAY/8.3/lib/pkgconfig:/opt/cray/pe/ga/5.3.0.6/CRAY/8.3/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_x86_64=x86_64 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_haswell=15.0 LESSKEY=/etc/lesskey.bin MERCURIAL_HOME=/usr/common/software/mercurial/3.8.3 PYTHONSTARTUP=/etc/pythonstart PWD=/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source PE_PETSC_DEFAULT_GENCOMPS_CRAY_mic_knl=85 PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_haswell=8.3 PE_SMA_DEFAULT_COMPFLAG_GNU=-fcray-pointer RCLOCAL_BASEOPTS=true PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_mic_knl=8.5 INTEL_VERSION=16.0.3.210 PE_LIBSCI_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/libsci/16.06.1/@PRGENV@/@PE_LIBSCI_DEFAULT_GENCOMPS@/@PE_LIBSCI_DEFAULT_TARGET@/lib/pkgconfig PE_FFTW_DEFAULT_TARGET_haswell=haswell PE_FFTW_DEFAULT_TARGET_sandybridge=sandybridge SHELL=/bin/bash PE_HDF5_PARALLEL_DEFAULT_VOLATILE_PRGENV=GNU INTEL PE_LIBSCI_GENCOMPILERS_INTEL_mic_knl=15.0 PE_PETSC_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64 LESS_ADVANCED_PREPROCESSOR=no PE_HDF5_DEFAULT_VOLATILE_PRGENV=GNU INTEL PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 PRGENVMODULES=/opt/cray/pe/modules/3.2.10.4/init/.prgenvmodules:PrgEnv-cray:PrgEnv-gnu:PrgEnv-intel:PrgEnv-pathscale:PrgEnv-pgi PE_TPSL_DEFAULT_GENCOMPILERS_CRAY_interlagos=8.3 DMAPP_ABORT_ON_ERROR=1 CRAY_SHMEM_DIR=/opt/cray/pe/mpt/7.4.0/gni/sma PE_NETCDF_DEFAULT_VOLATILE_PRGENV=GNU PE_TPSL_64_DEFAULT_GENCOMPILERS_CRAY_sandybridge=8.3 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_sandybridge=5.1 4.9 MPICH_ABORT_ON_ERROR=1 PE_ENV=INTEL PE_LIBSCI_DEFAULT_GENCOMPS_GNU_mic_knl=51 PE_PRODUCT_LIST=CRAYPE_HASWELL:CRAY_RCA:CRAY_ALPS:DVS:CRAY_XPMEM:CRAY_DMAPP:CRAY_PMI:CRAY_UGNI:CRAY_UDREG:CRAY_LIBSCI:CRAYPE:INTEL PE_MPICH_VOLATILE_PRGENV=CRAY GNU PE_PETSC_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_PETSC_DEFAULT_GENCOMPS_GNU_interlagos=51 49 PE_PETSC_DEFAULT_GENCOMPS_GNU_haswell=51 49 SDK_HOME=/usr/lib64/jvm/java CXX=/opt/cray/pe/craype/2.5.5/bin/CC PE_MPICH_GENCOMPILERS_CRAY=8.3 PE_MPICH_GENCOMPS_CRAY=83 CRAY_RCA_POST_LINK_OPTS=-L/opt/cray/rca/1.0.0-6.21/lib64 -lrca PE_MPICH_TARGET_VAR_nvidia20=-lcudart MAIL=/var/mail/gpau CSHRCREAD=true SSH_CONNECTION=128.55.160.242 45153 128.55.209.23 22 MPICH_MPIIO_DVS_MAXNODES=32 PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 PE_MPICH_DIR_CRAY_DEFAULT64=64 PE_TPSL_DEFAULT_GENCOMPILERS_GNU_haswell=5.1 4.9 PE_LIBSCI_DEFAULT_GENCOMPS_CRAY_x86_64=83 PE_PARALLEL_NETCDF_DEFAULT_GENCOMPS_GNU=51 49 CRAY_UGNI_INCLUDE_OPTS=-I/opt/cray/ugni/6.0.12-2.1/include PE_PETSC_DEFAULT_GENCOMPS_INTEL_interlagos=150 PE_PKGCONFIG_DEFAULT_PRODUCTS=PE_TRILINOS:PE_TPSL_64:PE_TPSL:PE_PETSC:PE_PARALLEL_NETCDF:PE_NETCDF_HDF5PARALLEL:PE_NETCDF:PE_MPICH:PE_LIBSCI:PE_HDF5_PARALLEL:PE_HDF5:PE_GA:PE_FFTW PE_PAPI_DEFAULT_TARGET_VAR_nvidia35=,-lcupti,-lcudart,-lcuda PKG_CONFIG_PATH=/usr/common/software/darshan/3.0.1/lib/pkgconfig:/opt/cray/rca/1.0.0-6.21/lib64/pkgconfig:/opt/cray/alps/6.1.3-17.12/lib64/pkgconfig:/opt/cray/xpmem/0.1-4.5/lib64/pkgconfig:/opt/cray/gni-headers/5.0.7-3.1/lib64/pkgconfig:/opt/cray/dmapp/7.1.0-12.37/lib64/pkgconfig:/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64/pkgconfig:/opt/cray/ugni/6.0.12-2.1/lib64/pkgconfig:/opt/cray/udreg/2.3.2-4.6/lib64/pkgconfig:/opt/cray/pe/craype/2.5.5/pkg-config:/opt/cray/pe/iobuf/2.0.6/lib/pkgconfig:/opt/cray/pe/atp/2.0.2/lib/pkgconfig CRAY_MPICH_ROOTDIR=/opt/cray/pe/mpt/7.4.0 XNLSPATH=/usr/share/X11/nls _=/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/configure WINDOWMANAGER= PE_TPSL_DEFAULT_GENCOMPS_GNU_haswell=51 49 TOOLMODULES=/opt/cray/pe/modules/3.2.10.4/init/.toolmodules:apprentice:apprentice2:atp:chapel:cray-lgdb:cray-snplauncher:craypat:craypkg-gen:ddt:gdb:iobuf:papi:perftools:perftools-lite:stat:totalview:xt-craypat:xt-lgdb:xt-papi:xt-totalview:/etc/opt/cray/pe/modules/site_toolmodules PE_TRILINOS_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH:PE_HDF5_PARALLEL:PE_NETCDF_HDF5PARALLEL:PE_LIBSCI:PE_TPSL CRAY_DMAPP_INCLUDE_OPTS=-I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/gni-headers/5.0.7-3.1/include PE_TPSL_64_DEFAULT_GENCOMPS_INTEL_interlagos=150 PE_TPSL_64_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_mic_knl=15.0 QT_SYSTEM_DIR=/usr/share/desktop-data PE_MPICH_NV_LIBS_nvidia20=-lcudart MIC_LD_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/mic:/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/mic:/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/mic:/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/mic:/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/mic PE_TPSL_DEFAULT_GENCOMPS_CRAY_mic_knl=85 PE_NETCDF_DEFAULT_FIXED_PRGENV=CRAY INTEL MIC_LIBRARY_PATH=/opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/mic/lib:/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/mic:/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/mic PE_INTEL_FIXED_PKGCONFIG_PATH=/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPS_INTEL_haswell=150 PE_TPSL_DEFAULT_GENCOMPS_GNU_interlagos=51 49 PE_LIBSCI_DEFAULT_REQUIRED_PRODUCTS=PE_MPICH OSTYPE=linux PE_NETCDF_DEFAULT_REQUIRED_PRODUCTS=PE_HDF5 PE_NETCDF_HDF5PARALLEL_DEFAULT_GENCOMPS_GNU=51 49 PE_TRILINOS_DEFAULT_GENCOMPS_INTEL_x86_64=150 PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_interlagos=15.0 TBBROOT=/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb PE_SMA_MODULE_NAME=cray-shmem NLSPATH=/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/locale/%l_%t/%N:/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/locale/%l_%t/%N:/opt/intel/debugger_2016/gdb/intel64_mic/share/locale/%l_%t/%N:/opt/intel/debugger_2016/gdb/intel64/share/locale/%l_%t/%N PE_MPICH_GENCOMPS_GNU=51 49 CRAY_RCA_INCLUDE_OPTS=-I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include PE_PETSC_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 PE_TRILINOS_DEFAULT_GENCOMPS_CRAY_x86_64=85 PE_TPSL_64_DEFAULT_GENCOMPS_CRAY_haswell=83 CRAY_LIBSCI_PREFIX_DIR=/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64 TZ=US/Pacific PE_PARALLEL_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_TPSL_64_DEFAULT_VOLATILE_PKGCONFIG_PATH=/opt/cray/pe/tpsl/16.06.1/@PRGENV@64/@PE_TPSL_64_DEFAULT_GENCOMPS@/@PE_TPSL_64_DEFAULT_TARGET@/lib/pkgconfig PE_TPSL_DEFAULT_GENCOMPILERS_INTEL_sandybridge=15.0 PE_MPICH_DEFAULT_VOLATILE_PRGENV=CRAY GNU PE_SMA_PKGCONFIG_VARIABLES=PE_SMA_COMPFLAG_@prgenv@ CRAY_PRGENVINTEL=loaded PE_MPICH_MULTITHREADED_LIBS_multithreaded=_mt PE_TPSL_64_DEFAULT_VOLATILE_PRGENV=CRAY CRAY64 GNU GNU64 INTEL INTEL64 PE_LIBSCI_DEFAULT_GENCOMPILERS_INTEL_x86_64=15.0 PE_LIBSCI_OMP_REQUIRES_openmp=_mp PE_MPICH_FORTRAN_PKGCONFIG_LIBS=mpichf90 PE_NETCDF_DEFAULT_GENCOMPILERS_GNU=5.1 4.9 PE_LIBSCI_GENCOMPILERS_GNU_mic_knl=5.1 CRAY_SITE_LIST_DIR=/etc/opt/cray/pe/modules RCLOCAL_PRGENV=true PE_SMA_DIR_PGI_DEFAULT64=64 PE_PETSC_DEFAULT_GENCOMPILERS_GNU_x86_64=5.1 4.9 SCRATCH=/global/cscratch1/sd/gpau PE_TPSL_64_DEFAULT_GENCOMPS_GNU_x86_64=51 49 PE_LIBSCI_DEFAULT_PKGCONFIG_VARIABLES=PE_LIBSCI_DEFAULT_OMP_REQUIRES_@openmp@ CRAY_UDREG_POST_LINK_OPTS=-L/opt/cray/udreg/2.3.2-4.6/lib64 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1599) TESTING: resetEnvCompilers from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1599) CC (set to /opt/cray/pe/craype/2.5.5/bin/cc) found in environment variables - ignoring since also set on command line CXX (set to /opt/cray/pe/craype/2.5.5/bin/CC) found in environment variables - ignoring since also set on command line FC (set to /opt/cray/pe/craype/2.5.5/bin/ftn) found in environment variables - ignoring since also set on command line =============================================================================== ***** WARNING: MAKEFLAGS (set to w) found in environment variables - ignoring use ./configure MAKEFLAGS=$MAKEFLAGS if you really want to use that value ****** =============================================================================== ================================================================================ TEST checkEnvCompilers from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1629) TESTING: checkEnvCompilers from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1629) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1564) TESTING: checkMPICompilerOverride from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1564) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1583) TESTING: requireMpiLdPath from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1583) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:417) TESTING: checkVendor from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:417) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:427) TESTING: checkInitialFlags from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:427) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:553) TESTING: checkCCompiler from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:553) Locate a functional C compiler Checking for program /opt/cray/pe/craype/2.5.5/bin/cc...found Defined make macro "CC" to "/opt/cray/pe/craype/2.5.5/bin/cc" Pushing language C All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:586) TESTING: checkCPreprocessor from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:586) Locate a functional C preprocessor Checking for program /opt/cray/pe/craype/2.5.5/bin/cc...found Defined make macro "CPP" to "/opt/cray/pe/craype/2.5.5/bin/cc -E" Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 25 "/usr/include/stdlib.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 33 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 42 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 65 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 83 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 96 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 # 56 "/usr/include/stdlib.h" 3 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 82 "/usr/include/stdlib.h" 3 # 94 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 273 "/usr/include/stdlib.h" 3 extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) atoi (const char *__nptr) { return (int) strtol (__nptr, (char **) ((void*)0), 10); } extern __inline __attribute__ ((__gnu_inline__)) long int __attribute__ ((__nothrow__ , __leaf__)) atol (const char *__nptr) { return strtol (__nptr, (char **) ((void*)0), 10); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) long long int __attribute__ ((__nothrow__ , __leaf__)) atoll (const char *__nptr) { return strtoll (__nptr, (char **) ((void*)0), 10); } extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 315 "/usr/include/stdlib.h" 2 3 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 25 "/usr/include/alloca.h" 2 3 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 551 "/usr/include/stdlib.h" 3 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 573 "/usr/include/stdlib.h" 3 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 633 "/usr/include/stdlib.h" 3 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 656 "/usr/include/stdlib.h" 3 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 710 "/usr/include/stdlib.h" 3 extern int system (const char *__command) ; # 727 "/usr/include/stdlib.h" 3 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; # 1 "/usr/include/bits/stdlib-bsearch.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) void * bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) { size_t __l, __u, __idx; const void *__p; int __comparison; __l = 0; __u = __nmemb; while (__l < __u) { __idx = (__l + __u) / 2; __p = (void *) (((const char *) __base) + (__idx * __size)); __comparison = (*__compar) (__key, __p); if (__comparison < 0) __u = __idx; else if (__comparison > 0) __l = __idx + 1; else return (void *) __p; } return ((void*)0); } # 761 "/usr/include/stdlib.h" 2 3 extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 935 "/usr/include/stdlib.h" 3 # 946 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) double __attribute__ ((__nothrow__ , __leaf__)) atof (const char *__nptr) { return strtod (__nptr, (char **) ((void*)0)); } # 956 "/usr/include/stdlib.h" 2 3 # 964 "/usr/include/stdlib.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:627) TESTING: checkCUDACompiler from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:627) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:667) TESTING: checkCUDAPreprocessor from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:667) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:779) TESTING: checkCxxCompiler from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:779) Locate a functional Cxx compiler Checking for program /opt/cray/pe/craype/2.5.5/bin/CC...found Defined make macro "CXX" to "/opt/cray/pe/craype/2.5.5/bin/CC" Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:817) TESTING: checkCxxPreprocessor from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:817) Locate a functional Cxx preprocessor Checking for program /opt/cray/pe/craype/2.5.5/bin/CC...found Defined make macro "CXXCPP" to "/opt/cray/pe/craype/2.5.5/bin/CC -E" Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.8/cstdlib" 1 3 # 40 "/usr/include/c++/4.8/cstdlib" 3 # 1 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 4 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 2 3 # 1672 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 1744 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 1776 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 1789 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 1801 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 namespace std { typedef unsigned long size_t; typedef long ptrdiff_t; } # 1910 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 1958 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 1978 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 1986 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 2029 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 2055 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 2083 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 3 # 1 "/usr/include/c++/4.8/x86_64-suse-linux/bits/os_defines.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 40 "/usr/include/c++/4.8/x86_64-suse-linux/bits/os_defines.h" 2 3 # 2098 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.8/x86_64-suse-linux/bits/cpu_defines.h" 1 3 # 2101 "/usr/include/c++/4.8/x86_64-suse-linux/bits/c++config.h" 2 3 # 42 "/usr/include/c++/4.8/cstdlib" 2 3 # 71 "/usr/include/c++/4.8/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 33 "/usr/include/stdlib.h" 2 3 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 # 42 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 65 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 83 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 96 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 # 56 "/usr/include/stdlib.h" 3 # 74 "/usr/include/stdlib.h" 3 # 82 "/usr/include/stdlib.h" 3 # 94 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 236 "/usr/include/stdlib.h" 2 3 extern long int strtol_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern unsigned long int strtoul_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern long long int strtoll_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); __extension__ extern unsigned long long int strtoull_l (const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))); extern double strtod_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern float strtof_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern long double strtold_l (const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))); extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__leaf__)) atoi (const char *__nptr) throw () { return (int) strtol (__nptr, (char **) __null, 10); } extern __inline __attribute__ ((__gnu_inline__)) long int __attribute__ ((__leaf__)) atol (const char *__nptr) throw () { return strtol (__nptr, (char **) __null, 10); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) long long int __attribute__ ((__leaf__)) atoll (const char *__nptr) throw () { return strtoll (__nptr, (char **) __null, 10); } extern char *l64a (long int __n) throw () ; extern long int a64l (const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 extern "C" { typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 55 "/usr/include/sys/types.h" 3 typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 93 "/usr/include/sys/types.h" 3 typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef long int __fd_mask; typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern "C" { extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 extern "C" { __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw () __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__leaf__)) gnu_dev_major (unsigned long long int __dev) throw () { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__leaf__)) gnu_dev_minor (unsigned long long int __dev) throw () { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw () { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 } # 315 "/usr/include/stdlib.h" 2 3 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 25 "/usr/include/alloca.h" 2 3 extern "C" { extern void *alloca (size_t __size) throw (); } # 493 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void *aligned_alloc (size_t __alignment, size_t __size) throw () __attribute__ ((__malloc__)) __attribute__ ((__alloc_size__ (2))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *secure_getenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))); extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (const char *__command) ; extern char *canonicalize_file_name (const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *realpath (const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (const void *, const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (const void *, const void *, void *); extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; # 1 "/usr/include/bits/stdlib-bsearch.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) void * bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) { size_t __l, __u, __idx; const void *__p; int __comparison; __l = 0; __u = __nmemb; while (__l < __u) { __idx = (__l + __u) / 2; __p = (void *) (((const char *) __base) + (__idx * __size)); __comparison = (*__compar) (__key, __p); if (__comparison < 0) __u = __idx; else if (__comparison > 0) __l = __idx + 1; else return (void *) __p; } return __null; } # 761 "/usr/include/stdlib.h" 2 3 extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) throw (); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) throw (); extern int wctomb (char *__s, wchar_t __wchar) throw (); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) double __attribute__ ((__leaf__)) atof (const char *__nptr) throw () { return strtod (__nptr, (char **) __null); } # 956 "/usr/include/stdlib.h" 2 3 # 964 "/usr/include/stdlib.h" 3 } # 73 "/usr/include/c++/4.8/cstdlib" 2 3 # 113 "/usr/include/c++/4.8/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } } # 195 "/usr/include/c++/4.8/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 228 "/usr/include/c++/4.8/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:934) TESTING: checkFortranCompiler from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:934) Locate a functional Fortran compiler Checking for program /opt/cray/pe/craype/2.5.5/bin/ftn...found Defined make macro "FC" to "/opt/cray/pe/craype/2.5.5/bin/ftn" Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:955) TESTING: checkFortranComments from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:955) Make sure fortran comment "!" works Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1072) TESTING: checkLargeFileIO from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1072) ================================================================================ TEST checkArchiver from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1171) TESTING: checkArchiver from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1171) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.25.0 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.25.0 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/common/software/mercurial/3.8.3/bin/ar...not found Checking for program /usr/common/software/cmake/3.3.2//bin/ar...not found Checking for program /usr/common/software/darshan/3.0.1/bin/ar...not found Checking for program /usr/common/usg/bin/ar...not found Checking for program /usr/common/mss/bin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/ar...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/ar...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/ar...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/ar...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/ar...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/ar...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/ar...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/ar...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/ar...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/ar...not found Checking for program /usr/syscom/nsg/sbin/ar...not found Checking for program /usr/syscom/nsg/bin/ar...not found Checking for program /opt/modules/3.2.6.7/bin/ar...not found Checking for program /global/homes/g/gpau/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/common/software/mercurial/3.8.3/bin/ranlib...not found Checking for program /usr/common/software/cmake/3.3.2//bin/ranlib...not found Checking for program /usr/common/software/darshan/3.0.1/bin/ranlib...not found Checking for program /usr/common/usg/bin/ranlib...not found Checking for program /usr/common/mss/bin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/ranlib...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/ranlib...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/ranlib...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/ranlib...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/ranlib...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/ranlib...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/ranlib...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/ranlib...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/ranlib...not found Checking for program /usr/syscom/nsg/sbin/ranlib...not found Checking for program /usr/syscom/nsg/bin/ranlib...not found Checking for program /opt/modules/3.2.6.7/bin/ranlib...not found Checking for program /global/homes/g/gpau/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconf1.a /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconf1.a Possible ERROR while running ranlib: stderr: /usr/bin/ranlib: invalid option -- 'c' Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.25.0 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar (GNU Binutils; SUSE Linux Enterprise 12) 2.25.0 Copyright (C) 2014 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/common/software/mercurial/3.8.3/bin/ar...not found Checking for program /usr/common/software/cmake/3.3.2//bin/ar...not found Checking for program /usr/common/software/darshan/3.0.1/bin/ar...not found Checking for program /usr/common/usg/bin/ar...not found Checking for program /usr/common/mss/bin/ar...not found Checking for program /usr/common/nsg/bin/ar...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/ar...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/ar...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/ar...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/ar...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/ar...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/ar...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/ar...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/ar...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/ar...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/ar...not found Checking for program /usr/syscom/nsg/sbin/ar...not found Checking for program /usr/syscom/nsg/bin/ar...not found Checking for program /opt/modules/3.2.6.7/bin/ar...not found Checking for program /global/homes/g/gpau/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/common/software/mercurial/3.8.3/bin/ranlib...not found Checking for program /usr/common/software/cmake/3.3.2//bin/ranlib...not found Checking for program /usr/common/software/darshan/3.0.1/bin/ranlib...not found Checking for program /usr/common/usg/bin/ranlib...not found Checking for program /usr/common/mss/bin/ranlib...not found Checking for program /usr/common/nsg/bin/ranlib...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/ranlib...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/ranlib...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/ranlib...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/ranlib...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/ranlib...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/ranlib...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/ranlib...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/ranlib...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/ranlib...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/ranlib...not found Checking for program /usr/syscom/nsg/sbin/ranlib...not found Checking for program /usr/syscom/nsg/bin/ranlib...not found Checking for program /opt/modules/3.2.6.7/bin/ranlib...not found Checking for program /global/homes/g/gpau/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconf1.a /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconf1.a Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1283) TESTING: checkSharedLinker from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1283) Check that the linker can produce shared libraries Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Checking shared linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "LD_SHARED" to "/usr/bin/ar" Trying C compiler flag Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Executing: /usr/bin/ar cr /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconftest.a /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o ; /usr/bin/ranlib /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconftest.a Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -lconftest Using shared linker /usr/bin/ar with flags [] and library extension a Executing: uname -s stdout: Linux ================================================================================ TEST checkPIC from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1031) TESTING: checkPIC from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1031) Determine the PIC option for each compiler Skip checking PIC options on user request ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1372) TESTING: checkSharedLinkerPaths from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1372) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: /opt/cray/pe/craype/2.5.5/bin/cc -V Trying C linker flag -Wl,-rpath, Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -Wl,-rpath,/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: /opt/cray/pe/craype/2.5.5/bin/cc -V Trying Cxx linker flag -Wl,-rpath, Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -Wl,-rpath,/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: /opt/cray/pe/craype/2.5.5/bin/cc -V Trying FC linker flag -Wl,-rpath, Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -Wl,-rpath,/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1407) TESTING: checkLibC from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1407) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking ================================================================================ TEST checkDynamicLinker from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1456) TESTING: checkDynamicLinker from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1456) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 23 "/usr/include/dlfcn.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 25 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/include/bits/dlfcn.h" 1 3 # 28 "/usr/include/dlfcn.h" 2 3 # 50 "/usr/include/dlfcn.h" 3 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 78 "/usr/include/dlfcn.h" 3 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 186 "/usr/include/dlfcn.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker /usr/bin/ar using flags [] Checking for program /usr/bin/ar...found Defined make macro "DYNAMICLINKER" to "/usr/bin/ar" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /usr/bin/ar -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconftest.so /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: /usr/bin/ar: creating /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconftest.so Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o: In function `main': conftest.c:(.text+0x36): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Using dynamic linker /usr/bin/ar with flags [] and library extension so ================================================================================ TEST output from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1508) TESTING: output from config.setCompilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/setCompilers.py:1508) Output module data as defines and substitutions Substituting "CC" with "/opt/cray/pe/craype/2.5.5/bin/cc" Substituting "CFLAGS" with " " Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/opt/cray/pe/craype/2.5.5/bin/cc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/opt/cray/pe/craype/2.5.5/bin/CC" Substituting "CXX_CXXFLAGS" with "" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/opt/cray/pe/craype/2.5.5/bin/CC -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/opt/cray/pe/craype/2.5.5/bin/ftn" Substituting "FFLAGS" with "" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "" ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/indexTypes.py:31) Defined make macro "PETSC_INDEX_SIZE" to "32" ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "" and code [] Defined make macro "BUILDSHAREDLIB" to "no" Defined "HAVE_SHARED_LIBRARIES" to "1" Shared libraries - disabled ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilerFlags.py:72) TESTING: configureCompilerFlags from config.compilerFlags(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilerFlags.py:72) Get the default compiler flags Trying C compiler flag -O Trying Cxx compiler flag -O Trying FC compiler flag -O Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O Popping language C Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Popping language Cxx Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -O Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/cc --version stdout: icc (ICC) 16.0.3 20160415 Copyright (C) 1985-2016 Intel Corporation. All rights reserved. getCompilerVersion: /opt/cray/pe/craype/2.5.5/bin/cc icc (ICC) 16.0.3 20160415 Executing: /opt/cray/pe/craype/2.5.5/bin/cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. =============================================================================== ***** WARNING: Using default optimization C flags -O You might consider manually setting optimal optimization flags for your system with COPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== Executing: /opt/cray/pe/craype/2.5.5/bin/CC --version stdout: icpc (ICC) 16.0.3 20160415 Copyright (C) 1985-2016 Intel Corporation. All rights reserved. getCompilerVersion: /opt/cray/pe/craype/2.5.5/bin/CC icpc (ICC) 16.0.3 20160415 Executing: /opt/cray/pe/craype/2.5.5/bin/CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. =============================================================================== ***** WARNING: Using default C++ optimization flags -O You might consider manually setting optimal optimization flags for your system with CXXOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== Executing: /opt/cray/pe/craype/2.5.5/bin/ftn --version stdout: ifort (IFORT) 16.0.3 20160415 Copyright (C) 1985-2016 Intel Corporation. All rights reserved. getCompilerVersion: /opt/cray/pe/craype/2.5.5/bin/ftn ifort (IFORT) 16.0.3 20160415 Executing: /opt/cray/pe/craype/2.5.5/bin/ftn --help stdout: Usage: ftn [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/ftn --help stdout: Usage: ftn [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. Executing: /opt/cray/pe/craype/2.5.5/bin/ftn --help stdout: Usage: ftn [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. =============================================================================== ***** WARNING: Using default FORTRAN optimization flags -O You might consider manually setting optimal optimization flags for your system with FOPTFLAGS="optimization flags" see config/examples/arch-*-opt.py for examples =============================================================================== ================================================================================ TEST configureDebugging from PETSc.options.debugging(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== Executing: /opt/cray/pe/craype/2.5.5/bin/cc --help stdout: Usage: cc [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. ================================================================================ TEST checkRestrict from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: /opt/cray/pe/craype/2.5.5/bin/cc -V Pushing language C All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c(5): error: expected a ";" float * restrict x;; ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:317) TESTING: checkCFormatting from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:317) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:328) TESTING: checkDynamicLoadFlag from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:328) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o: In function `main': conftest.c:(.text+0x3c): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Defined "HAVE_RTLD_LAZY" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o: In function `main': conftest.c:(.text+0x3c): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Defined "HAVE_RTLD_NOW" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o: In function `main': conftest.c:(.text+0x39): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Defined "HAVE_RTLD_LOCAL" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o: In function `main': conftest.c:(.text+0x3c): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:168) TESTING: checkCLibraries from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:168) Determines the libraries needed to link with C Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -v -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: icc version 16.0.3 (gcc version 4.8.0 compatibility) /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mcpcom -mGLOB_em64t=TRUE -mP1OPT_version=16.0-intel64 -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=480 "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include -I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/alps/6.1.3-17.12/include -I/opt/cray/xpmem/0.1-4.5/include -I/opt/cray/gni-headers/5.0.7-3.1/include -I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include -I/opt/cray/ugni/6.0.12-2.1/include -I/opt/cray/udreg/2.3.2-4.6/include -I/opt/cray/wlm_detect/1.1.0-4.2/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include -xCORE-AVX2 -static -D__CRAYXC -D__CRAY_HASWELL -D__CRAYXT_COMPUTE_LINUX_TARGET -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -v -O -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/lib64 -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts -lfmpich -lmpichcxx -Wl,--start-group -ldarshan -ldarshan-stubs -Wl,--end-group -lz -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -lpthread -lsma -lpmi -ldmapp -lpthread -lsci_intel_mpi -lsci_intel -lm -ldl -lmpich_intel -lrt -lugni -lpthread -lpmi -lm -ldl -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lxpmem -lugni -lpthread -ludreg -lsci_intel -lm -ldl -Wl,--as-needed,-limf,--no-as-needed -Wl,--as-needed,-lm,--no-as-needed -Wl,--as-needed,-lifcore,--no-as-needed -Wl,--as-needed,-lifport,--no-as-needed -Wl,--as-needed,-lpthread,--no-as-needed" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/iccecVFwgas_.s -mGLOB_dashboard_use_source_name -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -mIPOPT_activate -mGLOB_product_id_code=0x22006d91 -mGLOB_extended_instructions=0x4000 -mGLOB_advanced_optim=TRUE -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mP2OPT_disam_type_based_disam=2 -mP2OPT_disam_assume_ansi_c -mP2OPT_checked_disam_ansi_alias=TRUE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=icc0105857089433fevnf -mGLOB_opt_level=2 -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/iccslisGccgS1 -mIPOPT_mo_global_data -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/iccscriptHcW74L "-mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o" "--build-id" "-static" "-m" "elf_x86_64" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/lib64" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-o" "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/" "-L/lib/../lib64" "-L/lib/../lib64/" "-L/usr/lib/../lib64" "-L/usr/lib/../lib64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../" "-L/lib64" "-L/lib/" "-L/usr/lib64" "-L/usr/lib" "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o" "-ldl" "@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts" "-lfmpich" "-lmpichcxx" "--start-group" "-ldarshan" "-ldarshan-stubs" "--end-group" "-lz" "--no-as-needed" "-lAtpSigHandler" "-lAtpSigHCommData" "--undefined=_ATP_Data_Globals" "--undefined=__atpHandlerInstall" "-lpthread" "-lsma" "-lpmi" "-ldmapp" "-lpthread" "-lsci_intel_mpi" "-lsci_intel" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "-lmpich_intel" "-lrt" "-lugni" "-lpthread" "-lpmi" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "-lpmi" "-lpthread" "-lalpslli" "-lpthread" "-lwlm_detect" "-lalpsutil" "-lpthread" "-lrca" "-lxpmem" "-lugni" "-lpthread" "-ludreg" "-lsci_intel" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "--as-needed" "-limf" "--no-as-needed" "--as-needed" "-lm" "--no-as-needed" "--as-needed" "-lifcore" "--no-as-needed" "--as-needed" "-lifport" "--no-as-needed" "--as-needed" "-lpthread" "--no-as-needed" "-limf" "-lsvml" "-lirng" "-lm" "-lipgo" "-ldecimal" "-lgcc" "-lgcc_eh" "-lirc" "-lsvml" "-lc" "-lgcc" "-lgcc_eh" "-lirc_s" "-ldl" "-lc" "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_iccefnfFy.o -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/iccwarchQfpehZ -mGLOB_linker_version=2.25.0 -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/icctempfilerVJtEJ -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_iccefnfFy.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.c /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -mIPOPT_object_files=T -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/iccalisfB2N32 -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/iccelisdppggN -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/icceobj2KGPsx -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/iccllis5l6uFh ld /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o --build-id -static -m elf_x86_64 -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/lib64 -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts -lfmpich -lmpichcxx --start-group -ldarshan -ldarshan-stubs --end-group -lz --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lpthread -lsma -lpmi -ldmapp -lpthread -lsci_intel_mpi -lsci_intel -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl -lmpich_intel -lrt -lugni -lpthread -lpmi -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lxpmem -lugni -lpthread -ludreg -lsci_intel -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl --as-needed -limf --no-as-needed --as-needed -lm --no-as-needed --as-needed -lifcore --no-as-needed --as-needed -lifport --no-as-needed --as-needed -lpthread --no-as-needed -limf -lsvml -lirng -lm -lipgo -ldecimal -lgcc -lgcc_eh -lirc -lsvml -lc -lgcc -lgcc_eh -lirc_s -ldl -lc /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o Popping language C compilers: Checking arg icc compilers: Unknown arg icc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 16.0.3 compilers: Unknown arg 16.0.3 compilers: Checking arg (gcc compilers: Unknown arg (gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.0 compilers: Unknown arg 4.8.0 compilers: Checking arg compatibility) compilers: Unknown arg compatibility) compilers: Checking arg /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mcpcom compilers: Unknown arg /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mcpcom compilers: Checking arg -mGLOB_em64t=TRUE compilers: Unknown arg -mGLOB_em64t=TRUE compilers: Checking arg -mP1OPT_version=16.0-intel64 compilers: Unknown arg -mP1OPT_version=16.0-intel64 compilers: Checking arg -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=480 compilers: Unknown arg -mGLOB_gcc_version=480 compilers: Checking arg "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include compilers: Unknown arg "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include compilers: Checking arg -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include compilers: Unknown arg -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include compilers: Checking arg -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include compilers: Unknown arg -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include compilers: Checking arg -I/opt/cray/rca/1.0.0-6.21/include compilers: Unknown arg -I/opt/cray/rca/1.0.0-6.21/include compilers: Checking arg -I/opt/cray/alps/6.1.3-17.12/include compilers: Unknown arg -I/opt/cray/alps/6.1.3-17.12/include compilers: Checking arg -I/opt/cray/xpmem/0.1-4.5/include compilers: Unknown arg -I/opt/cray/xpmem/0.1-4.5/include compilers: Checking arg -I/opt/cray/gni-headers/5.0.7-3.1/include compilers: Unknown arg -I/opt/cray/gni-headers/5.0.7-3.1/include compilers: Checking arg -I/opt/cray/dmapp/7.1.0-12.37/include compilers: Unknown arg -I/opt/cray/dmapp/7.1.0-12.37/include compilers: Checking arg -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include compilers: Unknown arg -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include compilers: Checking arg -I/opt/cray/ugni/6.0.12-2.1/include compilers: Unknown arg -I/opt/cray/ugni/6.0.12-2.1/include compilers: Checking arg -I/opt/cray/udreg/2.3.2-4.6/include compilers: Unknown arg -I/opt/cray/udreg/2.3.2-4.6/include compilers: Checking arg -I/opt/cray/wlm_detect/1.1.0-4.2/include compilers: Unknown arg -I/opt/cray/wlm_detect/1.1.0-4.2/include compilers: Checking arg -I/opt/cray/krca/1.0.0-3.55/include compilers: Unknown arg -I/opt/cray/krca/1.0.0-3.55/include compilers: Checking arg -I/opt/cray-hss-devel/8.0.0/include compilers: Unknown arg -I/opt/cray-hss-devel/8.0.0/include compilers: Checking arg -xCORE-AVX2 compilers: Unknown arg -xCORE-AVX2 compilers: Checking arg -static compilers: Unknown arg -static compilers: Checking arg -D__CRAYXC compilers: Unknown arg -D__CRAYXC compilers: Checking arg -D__CRAY_HASWELL compilers: Unknown arg -D__CRAY_HASWELL compilers: Checking arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Unknown arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Found library directory: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Found library directory: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Found library directory: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Found library directory: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Found library directory: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Found library directory: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Found library directory: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Found library directory: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Found library directory: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Found library directory: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/lib64 compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Found library directory: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Unknown arg -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg -lfmpich compilers: Found library : -lfmpich compilers: Checking arg -lmpichcxx compilers: Found library : -lmpichcxx compilers: Checking arg -Wl,--start-group compilers: Unknown arg -Wl,--start-group compilers: Checking arg -ldarshan compilers: Found library : -ldarshan compilers: Checking arg -ldarshan-stubs compilers: Found library : -ldarshan-stubs compilers: Checking arg -Wl,--end-group compilers: Unknown arg -Wl,--end-group compilers: Checking arg -lz compilers: Found library : -lz compilers: Checking arg -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData compilers: Unknown arg -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData compilers: Checking arg -Wl,--undefined=_ATP_Data_Globals compilers: Unknown arg -Wl,--undefined=_ATP_Data_Globals compilers: Checking arg -Wl,--undefined=__atpHandlerInstall compilers: Unknown arg -Wl,--undefined=__atpHandlerInstall compilers: Checking arg -lpthread compilers: Found library : -lpthread compilers: Checking arg -lsma compilers: Found library : -lsma compilers: Checking arg -lpmi compilers: Found library : -lpmi compilers: Checking arg -ldmapp compilers: Found library : -ldmapp compilers: Checking arg -lpthread compilers: Checking arg -lsci_intel_mpi compilers: Found library : -lsci_intel_mpi compilers: Checking arg -lsci_intel compilers: Found library : -lsci_intel compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lmpich_intel compilers: Found library : -lmpich_intel compilers: Checking arg -lrt compilers: Found library : -lrt compilers: Checking arg -lugni compilers: Found library : -lugni compilers: Checking arg -lpthread compilers: Checking arg -lpmi compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lpmi compilers: Checking arg -lpthread compilers: Checking arg -lalpslli compilers: Found library : -lalpslli compilers: Checking arg -lpthread compilers: Checking arg -lwlm_detect compilers: Found library : -lwlm_detect compilers: Checking arg -lalpsutil compilers: Found library : -lalpsutil compilers: Checking arg -lpthread compilers: Checking arg -lrca compilers: Found library : -lrca compilers: Checking arg -lxpmem compilers: Found library : -lxpmem compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -ludreg compilers: Found library : -ludreg compilers: Checking arg -lsci_intel compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -Wl,--as-needed,-limf,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-limf,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lm,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lm,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lifcore,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lifcore,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lifport,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lifport,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lpthread,--no-as-needed" compilers: Unknown arg -Wl,--as-needed,-lpthread,--no-as-needed compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 compilers: Unknown arg -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 compilers: Checking arg -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/iccecVFwgas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/iccecVFwgas_.s compilers: Checking arg -mGLOB_dashboard_use_source_name compilers: Unknown arg -mGLOB_dashboard_use_source_name compilers: Checking arg -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Unknown arg -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_product_id_code=0x22006d91 compilers: Unknown arg -mGLOB_product_id_code=0x22006d91 compilers: Checking arg -mGLOB_extended_instructions=0x4000 compilers: Unknown arg -mGLOB_extended_instructions=0x4000 compilers: Checking arg -mGLOB_advanced_optim=TRUE compilers: Unknown arg -mGLOB_advanced_optim=TRUE compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mP2OPT_disam_type_based_disam=2 compilers: Unknown arg -mP2OPT_disam_type_based_disam=2 compilers: Checking arg -mP2OPT_disam_assume_ansi_c compilers: Unknown arg -mP2OPT_disam_assume_ansi_c compilers: Checking arg -mP2OPT_checked_disam_ansi_alias=TRUE compilers: Unknown arg -mP2OPT_checked_disam_ansi_alias=TRUE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mGLOB_opt_report_use_source_name compilers: Unknown arg -mGLOB_opt_report_use_source_name compilers: Checking arg -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Unknown arg -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=1 compilers: Unknown arg -mGLOB_offload_mode=1 compilers: Checking arg -mP2OPT_offload_unique_var_string=icc0105857089433fevnf compilers: Unknown arg -mP2OPT_offload_unique_var_string=icc0105857089433fevnf compilers: Checking arg -mGLOB_opt_level=2 compilers: Unknown arg -mGLOB_opt_level=2 compilers: Checking arg -mP2OPT_hlo_level=2 compilers: Unknown arg -mP2OPT_hlo_level=2 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so compilers: Checking arg -mPGOPTI_gen_threadsafe_level=0 compilers: Unknown arg -mPGOPTI_gen_threadsafe_level=0 compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/iccslisGccgS1 compilers: Unknown arg -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/iccslisGccgS1 compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/iccscriptHcW74L compilers: Unknown arg -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/iccscriptHcW74L compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-static" compilers: Unknown arg -static compilers: Checking arg "-m" compilers: Unknown arg -m compilers: Checking arg "elf_x86_64" compilers: Unknown arg elf_x86_64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Found library directory: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Found library directory: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Found library directory: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Found library directory: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Found library directory: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Found library directory: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Found library directory: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Found library directory: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Found library directory: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Found library directory: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Found library directory: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest" compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/" compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/" compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/lib/../lib64/" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/" compilers: Found library directory: -L/usr/x86_64-suse-linux/lib compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../" compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib/" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o" compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg "-ldl" compilers: Checking arg "@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts" compilers: Unknown arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg "-lfmpich" compilers: Checking arg "-lmpichcxx" compilers: Checking arg "--start-group" compilers: Unknown arg --start-group compilers: Checking arg "-ldarshan" compilers: Checking arg "-ldarshan-stubs" compilers: Checking arg "--end-group" compilers: Unknown arg --end-group compilers: Checking arg "-lz" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-lAtpSigHandler" compilers: Found library : -lAtpSigHandler compilers: Checking arg "-lAtpSigHCommData" compilers: Found library : -lAtpSigHCommData compilers: Checking arg "--undefined=_ATP_Data_Globals" compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg "--undefined=__atpHandlerInstall" compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg "-lpthread" compilers: Checking arg "-lsma" compilers: Checking arg "-lpmi" compilers: Checking arg "-ldmapp" compilers: Checking arg "-lpthread" compilers: Checking arg "-lsci_intel_mpi" compilers: Checking arg "-lsci_intel" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-limf" compilers: Found library : -limf compilers: Checking arg "-lm" compilers: Checking arg "-ldl" compilers: Checking arg "-lmpich_intel" compilers: Checking arg "-lrt" compilers: Checking arg "-lugni" compilers: Checking arg "-lpthread" compilers: Checking arg "-lpmi" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-limf" compilers: Checking arg "-lm" compilers: Checking arg "-ldl" compilers: Checking arg "-lpmi" compilers: Checking arg "-lpthread" compilers: Checking arg "-lalpslli" compilers: Checking arg "-lpthread" compilers: Checking arg "-lwlm_detect" compilers: Checking arg "-lalpsutil" compilers: Checking arg "-lpthread" compilers: Checking arg "-lrca" compilers: Checking arg "-lxpmem" compilers: Checking arg "-lugni" compilers: Checking arg "-lpthread" compilers: Checking arg "-ludreg" compilers: Checking arg "-lsci_intel" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-limf" compilers: Checking arg "-lm" compilers: Checking arg "-ldl" compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-limf" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lm" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lifcore" compilers: Found library : -lifcore compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lifport" compilers: Found library : -lifport compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lpthread" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-limf" compilers: Checking arg "-lsvml" compilers: Found library : -lsvml compilers: Checking arg "-lirng" compilers: Found library : -lirng compilers: Checking arg "-lm" compilers: Checking arg "-lipgo" compilers: Found library : -lipgo compilers: Checking arg "-ldecimal" compilers: Found library : -ldecimal compilers: Checking arg "-lgcc" compilers: Skipping system library: -lgcc compilers: Checking arg "-lgcc_eh" compilers: Found library : -lgcc_eh compilers: Checking arg "-lirc" compilers: Found library : -lirc compilers: Checking arg "-lsvml" compilers: Checking arg "-lc" compilers: Skipping system library: -lc compilers: Checking arg "-lgcc" compilers: Skipping system library: -lgcc compilers: Checking arg "-lgcc_eh" compilers: Checking arg "-lirc_s" compilers: Found library : -lirc_s compilers: Checking arg "-ldl" compilers: Checking arg "-lc" compilers: Skipping system library: -lc compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o"" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_iccefnfFy.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_iccefnfFy.o compilers: Checking arg -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/iccwarchQfpehZ compilers: Unknown arg -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/iccwarchQfpehZ compilers: Checking arg -mGLOB_linker_version=2.25.0 compilers: Unknown arg -mGLOB_linker_version=2.25.0 compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/icctempfilerVJtEJ compilers: Unknown arg -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/icctempfilerVJtEJ compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_iccefnfFy.o compilers: Unknown arg -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_iccefnfFy.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.c compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.c compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/iccalisfB2N32 compilers: Unknown arg -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/iccalisfB2N32 compilers: Checking arg -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/iccelisdppggN compilers: Unknown arg -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/iccelisdppggN compilers: Checking arg -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/icceobj2KGPsx compilers: Unknown arg -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/icceobj2KGPsx compilers: Checking arg -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/iccllis5l6uFh compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/iccllis5l6uFh compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -static compilers: Unknown arg -static compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Found library directory: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Found library directory: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Found library directory: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Found library directory: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Found library directory: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Found library directory: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Found library directory: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Found library directory: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Found library directory: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Found library directory: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/lib64 compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Found library directory: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/ compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/ compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/lib/../lib64/ compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/ compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/ compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/ compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/ compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/ compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/ compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/ compilers: Found library directory: -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../ compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib/ compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Checking arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Unknown arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg -lfmpich compilers: Checking arg -lmpichcxx compilers: Checking arg --start-group compilers: Unknown arg --start-group compilers: Checking arg -ldarshan compilers: Checking arg -ldarshan-stubs compilers: Checking arg --end-group compilers: Unknown arg --end-group compilers: Checking arg -lz compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg -lpthread compilers: Checking arg -lsma compilers: Checking arg -lpmi compilers: Checking arg -ldmapp compilers: Checking arg -lpthread compilers: Checking arg -lsci_intel_mpi compilers: Checking arg -lsci_intel compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lmpich_intel compilers: Checking arg -lrt compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -lpmi compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lpmi compilers: Checking arg -lpthread compilers: Checking arg -lalpslli compilers: Checking arg -lpthread compilers: Checking arg -lwlm_detect compilers: Checking arg -lalpsutil compilers: Checking arg -lpthread compilers: Checking arg -lrca compilers: Checking arg -lxpmem compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -ludreg compilers: Checking arg -lsci_intel compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -limf compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lm compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lifcore compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lifport compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lpthread compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -limf compilers: Checking arg -lsvml compilers: Checking arg -lirng compilers: Checking arg -lm compilers: Checking arg -lipgo compilers: Checking arg -ldecimal compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_eh compilers: Checking arg -lirc compilers: Checking arg -lsvml compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_eh compilers: Checking arg -lirc_s compilers: Checking arg -ldl compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Libraries needed to link C code with another linker: ['-ldl', '-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64', '-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib', '-L/global/common/cori/software/darshan/3.0.1/lib', '-L/opt/cray/rca/1.0.0-6.21/lib64', '-L/opt/cray/alps/6.1.3-17.12/lib64', '-L/opt/cray/xpmem/0.1-4.5/lib64', '-L/opt/cray/dmapp/7.1.0-12.37/lib64', '-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64', '-L/opt/cray/ugni/6.0.12-2.1/lib64', '-L/opt/cray/udreg/2.3.2-4.6/lib64', '-L/opt/cray/pe/atp/2.0.2/libApp', '-L/opt/cray/wlm_detect/1.1.0-4.2/lib64', '-lfmpich', '-lmpichcxx', '-ldarshan', '-ldarshan-stubs', '-lz', '-lpthread', '-lsma', '-lpmi', '-ldmapp', '-lsci_intel_mpi', '-lsci_intel', '-lmpich_intel', '-lrt', '-lugni', '-lalpslli', '-lwlm_detect', '-lalpsutil', '-lrca', '-lxpmem', '-ludreg', '-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64', '-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib', '-L/global/common/cori/software/darshan/3.0.1/lib', '-L/opt/cray/rca/1.0.0-6.21/lib64', '-L/opt/cray/alps/6.1.3-17.12/lib64', '-L/opt/cray/xpmem/0.1-4.5/lib64', '-L/opt/cray/dmapp/7.1.0-12.37/lib64', '-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64', '-L/opt/cray/ugni/6.0.12-2.1/lib64', '-L/opt/cray/udreg/2.3.2-4.6/lib64', '-L/opt/cray/pe/atp/2.0.2/libApp', '-L/opt/cray/wlm_detect/1.1.0-4.2/lib64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/usr/lib64/gcc/x86_64-suse-linux/4.8', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/usr/x86_64-suse-linux/lib', '-lAtpSigHandler', '-lAtpSigHCommData', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-limf', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-lifcore', '-lifport', '-lsvml', '-lirng', '-lipgo', '-ldecimal', '-lgcc_eh', '-lirc', '-lirc_s', '-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64', '-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib', '-L/global/common/cori/software/darshan/3.0.1/lib', '-L/opt/cray/rca/1.0.0-6.21/lib64', '-L/opt/cray/alps/6.1.3-17.12/lib64', '-L/opt/cray/xpmem/0.1-4.5/lib64', '-L/opt/cray/dmapp/7.1.0-12.37/lib64', '-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64', '-L/opt/cray/ugni/6.0.12-2.1/lib64', '-L/opt/cray/udreg/2.3.2-4.6/lib64', '-L/opt/cray/pe/atp/2.0.2/libApp', '-L/opt/cray/wlm_detect/1.1.0-4.2/lib64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/usr/lib64/gcc/x86_64-suse-linux/4.8', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/usr/x86_64-suse-linux/lib', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin'] compilers: Check that C libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1359) TESTING: checkDependencyGenerationFlag from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1359) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -MMD -MP /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -MMD -MP /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Trying FC compiler flag -MMD -MP Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Rejected FC compiler flag -MMD because no dependency file (/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.d) was generated Trying FC compiler flag -xMMD Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Rejected FC compiler flag -MD because no dependency file (/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.d) was generated Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -MMD -MP /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-MP' Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '-MP' Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -MMD /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -xMMD /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: ifort: command line error: Unrecognized keyword 'MMD' for option '-x' Source: program main end Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to ifort: command line error: Unrecognized keyword 'MMD' for option '-x' PETSc Error: No output file produced Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -qmakedep=gcc /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-qmakedep=gcc' Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '-qmakedep=gcc' Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -MD /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Popping language FC ================================================================================ TEST checkC99Flag from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1405) TESTING: checkC99Flag from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1405) Check for -std=c99 or equivalent flag Accepted C99 compile flag: -std=c99 Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c(11): error: expected an expression for (int i=0; i<2; i++){ ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c(11): error: identifier "i" is undefined for (int i=0; i<2; i++){ ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c(11): error: expected an expression for (int i=0; i<2; i++){ ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c(11): error: identifier "i" is undefined for (int i=0; i<2; i++){ ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c (code 2) PETSc Error: No output file produced Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -std=c99 /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { float x[2],y; y = FLT_ROUNDS; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/CC --help stdout: Usage: CC [options] file... Options: -[no]-add-rpath Controls whether or not '-Wl,-rpath' options are added for all pkg-config generated '-L' options. This can be useful to 'lock in' specific versions of libraries at runtime for dynamically linked applications. (Off by default.) -[no-]as-needed Controls whether or not '-l' options provided by the driver will be wrapped with '-Wl,--as-needed' and '-Wl,--no-as-needed' when possible to minimize unnecessary dependencies when linking dynamically. (On by default.) --[no-]craype-buildtools-check controls whether or not CrayPE attempts to detect that it was called via configure and switch to 'native' link mode. There is a slight performance hit using this option. (On by default.) --cray-bypass-pkgconfig Disable linking PE libraries via pkg-config. --cray-print-opts[=option] Print the results generated by pkg-config. options: all print include and library information. cflags print include information. cray_ld_library_path print a dynamically generated CRAY_LD_LIBRARY_PATH. libs Print library information. pcfiles Print the pcfiles that pkg-config will be called with. pkg_config_path Print PKG_CONFIG_PATH used. variables Print the variables definitions that pkg-config will be called with. -craype-verbose Print the command which is forwarded to compiler invocation. -default64 PGI: Passes the -i8 and -r8 options to the compiler. The -i8 option directs the compiler to use 64 bits for the data sizeof default integer and logical operations. The -r8 option directs the compiler to use 64 bits for the data size of default real variables. CCE:Passes the -sdefault64 option to the compiler. For CCE, the ftn command will also recognize the -sdefault64 option and perform the same functionality as the -default64 option. The -default64 option also arranges that appropriate 64-bit versions of the MPI & SHMEM libraries are used. -dynamic Directs the compiler driver to link dynamic libraries at runtime, rather than linking static libraries in at compile time. The linker stores the internal name of the dynamic library in the executable file. The actual library that is loaded at runtime must have the same internal name but, may differ from the filename of the library found at link time. This option is used to create dynamically linked executable files and may not be used with the -static or -shared options. -[no]-gcc-rpath Controls whether or not '-Wl,-rpath=/opt/cray/pe/gcc-libs' is added to the link line when dynamically linking using gcc. This enables a user to run such an application without setting LD_LIBRARY_PATH or loading a gcc module. (On by default.) -help Print a description of the options understood by the craype driver. -shared Creates a library which may be dynamically linked at runtime. -static Directs the linker to use the static version of the libraries, not the dynamic version of the libraries, to create an executable file. (This is the default.) -target-accel=[ACCELERATOR] Set the desired accelerator target. -target-cpu=[CPU] Set the desired cpu optimization. The appropriate optimization flag will be passed to the compiler, and matching libraries will be linked in. -target-network=[NETWORK] Set the desired network target. OpenMP support: -homp Enables OpenMP and links in OpenMP libraries when possible using CCE. (This is the default.) -hnoomp Disables OpenMP and links in non-OpenMP libraries when using CCE. -fopenmp Enables OpenMP and links in OpenMP libraries when possible using GNU. -openmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -mp Enables OpenMP and links in OpenMP libraries when possible using PGI. -Mnoopenmp Disables OpenMP and links in non-OpenMP libraries when using PGI. -qopenmp Enables OpenMP and links in OpenMP libraries when possible when using Intel. -qno-openmp Disables OpenMP and links in non-OpenMP libraries when possible when using Intel. ================================================================================ TEST checkRestrict from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Executing: /opt/cray/pe/craype/2.5.5/bin/cc -V Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc(5): error: expected a ";" float * restrict x;; ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc (code 2) Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:368) TESTING: checkCxxNamespace from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:368) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:341) TESTING: checkCxxOptionalExtensions from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:341) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:426) TESTING: checkCxxLibraries from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:426) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -v -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: stderr: icpc version 16.0.3 (gcc version 4.8.0 compatibility) /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mcpcom -mGLOB_em64t=TRUE -mP1OPT_version=16.0-intel64 -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=480 "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include -I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/alps/6.1.3-17.12/include -I/opt/cray/xpmem/0.1-4.5/include -I/opt/cray/gni-headers/5.0.7-3.1/include -I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include -I/opt/cray/ugni/6.0.12-2.1/include -I/opt/cray/udreg/2.3.2-4.6/include -I/opt/cray/wlm_detect/1.1.0-4.2/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include -xCORE-AVX2 -static -D__CRAYXC -D__CRAY_HASWELL -D__CRAYXT_COMPUTE_LINUX_TARGET -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -v -O -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/lib64 -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts -lfmpich -lmpichcxx -Wl,--start-group -ldarshan -ldarshan-stubs -Wl,--end-group -lz -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -lpthread -lmpichcxx_intel -lrt -lugni -lpthread -lpmi -lm -ldl -lsma -lpmi -ldmapp -lpthread -lsci_intel_mpi -lsci_intel -lm -ldl -lmpich_intel -lrt -lugni -lpthread -lpmi -lm -ldl -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lxpmem -lugni -lpthread -ludreg -lsci_intel -lm -ldl -Wl,--as-needed,-lstdc++,--no-as-needed -Wl,--as-needed,-limf,--no-as-needed -Wl,--as-needed,-lm,--no-as-needed -Wl,--as-needed,-lifcore,--no-as-needed -Wl,--as-needed,-lifport,--no-as-needed -Wl,--as-needed,-lpthread,--no-as-needed" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/icpc6KkSDCas_.s -mGLOB_dashboard_use_source_name -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -mIPOPT_activate -mGLOB_product_id_code=0x22006d8e -mGLOB_extended_instructions=0x4000 -mGLOB_advanced_optim=TRUE -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mP2OPT_disam_type_based_disam=2 -mP2OPT_disam_assume_ansi_c -mP2OPT_checked_disam_ansi_alias=TRUE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=icpc0101287353117ZEmn5p -mGLOB_opt_level=2 -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/icpcslisigBt9P -mIPOPT_mo_global_data -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/icpcscriptF6q2i6 "-mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o" "--build-id" "-static" "-m" "elf_x86_64" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/x86_64-suse-linux/lib" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/x86_64-suse-linux/lib" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/lib64" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-o" "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/" "-L/lib/../lib64" "-L/lib/../lib64/" "-L/usr/lib/../lib64" "-L/usr/lib/../lib64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../" "-L/lib64" "-L/lib/" "-L/usr/lib64" "-L/usr/lib" "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o" "-ldl" "-lfmpich" "-lmpichcxx" "-ldarshan" "-ldarshan-stubs" "-lz" "-lpthread" "-lsma" "-lpmi" "-ldmapp" "-lsci_intel_mpi" "-lsci_intel" "-lmpich_intel" "-lrt" "-lugni" "-lalpslli" "-lwlm_detect" "-lalpsutil" "-lrca" "-lxpmem" "-ludreg" "-lAtpSigHandler" "-lAtpSigHCommData" "-limf" "-lifcore" "-lifport" "-lsvml" "-lirng" "-lipgo" "-ldecimal" "-lgcc_eh" "-lirc" "-lirc_s" "-ldl" "@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts" "-lfmpich" "-lmpichcxx" "--start-group" "-ldarshan" "-ldarshan-stubs" "--end-group" "-lz" "--no-as-needed" "-lAtpSigHandler" "-lAtpSigHCommData" "--undefined=_ATP_Data_Globals" "--undefined=__atpHandlerInstall" "-lpthread" "-lmpichcxx_intel" "-lrt" "-lugni" "-lpthread" "-lpmi" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "-lsma" "-lpmi" "-ldmapp" "-lpthread" "-lsci_intel_mpi" "-lsci_intel" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "-lmpich_intel" "-lrt" "-lugni" "-lpthread" "-lpmi" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "-lpmi" "-lpthread" "-lalpslli" "-lpthread" "-lwlm_detect" "-lalpsutil" "-lpthread" "-lrca" "-lxpmem" "-lugni" "-lpthread" "-ludreg" "-lsci_intel" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "--as-needed" "-lstdc++" "--no-as-needed" "--as-needed" "-limf" "--no-as-needed" "--as-needed" "-lm" "--no-as-needed" "--as-needed" "-lifcore" "--no-as-needed" "--as-needed" "-lifport" "--no-as-needed" "--as-needed" "-lpthread" "--no-as-needed" "-limf" "-lsvml" "-lirng" "-lstdc++" "-lm" "-lipgo" "-ldecimal" "-lstdc++" "-lgcc" "-lgcc_eh" "-lirc" "-lsvml" "-lc" "-lgcc" "-lgcc_eh" "-lirc_s" "-ldl" "-lc" "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_icpc8F1xhh.o -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/icpcwarchxoYfVY -mGLOB_linker_version=2.25.0 -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/icpctempfilep27qff -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_icpc8F1xhh.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.c /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -mIPOPT_object_files=T -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/icpcalisfUmSyN -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/icpcelisAy8LH3 -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/icpceobj7gMQQj -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/icpcllisWZi5Zz ld /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o --build-id -static -m elf_x86_64 -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/lib64 -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -lAtpSigHandler -lAtpSigHCommData -limf -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -ldl @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts -lfmpich -lmpichcxx --start-group -ldarshan -ldarshan-stubs --end-group -lz --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lpthread -lmpichcxx_intel -lrt -lugni -lpthread -lpmi -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl -lsma -lpmi -ldmapp -lpthread -lsci_intel_mpi -lsci_intel -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl -lmpich_intel -lrt -lugni -lpthread -lpmi -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lxpmem -lugni -lpthread -ludreg -lsci_intel -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl --as-needed -lstdc++ --no-as-needed --as-needed -limf --no-as-needed --as-needed -lm --no-as-needed --as-needed -lifcore --no-as-needed --as-needed -lifport --no-as-needed --as-needed -lpthread --no-as-needed -limf -lsvml -lirng -lstdc++ -lm -lipgo -ldecimal -lstdc++ -lgcc -lgcc_eh -lirc -lsvml -lc -lgcc -lgcc_eh -lirc_s -ldl -lc /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o Popping language Cxx compilers: Checking arg icpc compilers: Unknown arg icpc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 16.0.3 compilers: Unknown arg 16.0.3 compilers: Checking arg (gcc compilers: Unknown arg (gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.8.0 compilers: Unknown arg 4.8.0 compilers: Checking arg compatibility) compilers: Unknown arg compatibility) compilers: Checking arg /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mcpcom compilers: Unknown arg /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mcpcom compilers: Checking arg -mGLOB_em64t=TRUE compilers: Unknown arg -mGLOB_em64t=TRUE compilers: Checking arg -mP1OPT_version=16.0-intel64 compilers: Unknown arg -mP1OPT_version=16.0-intel64 compilers: Checking arg -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=480 compilers: Unknown arg -mGLOB_gcc_version=480 compilers: Checking arg "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include compilers: Unknown arg "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include compilers: Checking arg -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include compilers: Unknown arg -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include compilers: Checking arg -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include compilers: Unknown arg -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include compilers: Checking arg -I/opt/cray/rca/1.0.0-6.21/include compilers: Unknown arg -I/opt/cray/rca/1.0.0-6.21/include compilers: Checking arg -I/opt/cray/alps/6.1.3-17.12/include compilers: Unknown arg -I/opt/cray/alps/6.1.3-17.12/include compilers: Checking arg -I/opt/cray/xpmem/0.1-4.5/include compilers: Unknown arg -I/opt/cray/xpmem/0.1-4.5/include compilers: Checking arg -I/opt/cray/gni-headers/5.0.7-3.1/include compilers: Unknown arg -I/opt/cray/gni-headers/5.0.7-3.1/include compilers: Checking arg -I/opt/cray/dmapp/7.1.0-12.37/include compilers: Unknown arg -I/opt/cray/dmapp/7.1.0-12.37/include compilers: Checking arg -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include compilers: Unknown arg -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include compilers: Checking arg -I/opt/cray/ugni/6.0.12-2.1/include compilers: Unknown arg -I/opt/cray/ugni/6.0.12-2.1/include compilers: Checking arg -I/opt/cray/udreg/2.3.2-4.6/include compilers: Unknown arg -I/opt/cray/udreg/2.3.2-4.6/include compilers: Checking arg -I/opt/cray/wlm_detect/1.1.0-4.2/include compilers: Unknown arg -I/opt/cray/wlm_detect/1.1.0-4.2/include compilers: Checking arg -I/opt/cray/krca/1.0.0-3.55/include compilers: Unknown arg -I/opt/cray/krca/1.0.0-3.55/include compilers: Checking arg -I/opt/cray-hss-devel/8.0.0/include compilers: Unknown arg -I/opt/cray-hss-devel/8.0.0/include compilers: Checking arg -xCORE-AVX2 compilers: Unknown arg -xCORE-AVX2 compilers: Checking arg -static compilers: Unknown arg -static compilers: Checking arg -D__CRAYXC compilers: Unknown arg -D__CRAYXC compilers: Checking arg -D__CRAY_HASWELL compilers: Unknown arg -D__CRAY_HASWELL compilers: Checking arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Unknown arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Found library directory: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Found library directory: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Found library directory: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Found library directory: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Found library directory: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Found library directory: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Found library directory: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Found library directory: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Found library directory: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Found library directory: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Found library directory: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -lfmpich compilers: Found library: -lfmpich Library already in C list so skipping in C++ compilers: Checking arg -lmpichcxx compilers: Found library: -lmpichcxx Library already in C list so skipping in C++ compilers: Checking arg -ldarshan compilers: Found library: -ldarshan Library already in C list so skipping in C++ compilers: Checking arg -ldarshan-stubs compilers: Found library: -ldarshan-stubs Library already in C list so skipping in C++ compilers: Checking arg -lz compilers: Found library: -lz Library already in C list so skipping in C++ compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in C++ compilers: Checking arg -lsma compilers: Found library: -lsma Library already in C list so skipping in C++ compilers: Checking arg -lpmi compilers: Found library: -lpmi Library already in C list so skipping in C++ compilers: Checking arg -ldmapp compilers: Found library: -ldmapp Library already in C list so skipping in C++ compilers: Checking arg -lsci_intel_mpi compilers: Found library: -lsci_intel_mpi Library already in C list so skipping in C++ compilers: Checking arg -lsci_intel compilers: Found library: -lsci_intel Library already in C list so skipping in C++ compilers: Checking arg -lmpich_intel compilers: Found library: -lmpich_intel Library already in C list so skipping in C++ compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in C++ compilers: Checking arg -lugni compilers: Found library: -lugni Library already in C list so skipping in C++ compilers: Checking arg -lalpslli compilers: Found library: -lalpslli Library already in C list so skipping in C++ compilers: Checking arg -lwlm_detect compilers: Found library: -lwlm_detect Library already in C list so skipping in C++ compilers: Checking arg -lalpsutil compilers: Found library: -lalpsutil Library already in C list so skipping in C++ compilers: Checking arg -lrca compilers: Found library: -lrca Library already in C list so skipping in C++ compilers: Checking arg -lxpmem compilers: Found library: -lxpmem Library already in C list so skipping in C++ compilers: Checking arg -ludreg compilers: Found library: -ludreg Library already in C list so skipping in C++ compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/x86_64-suse-linux/lib compilers: Found library directory: -L/usr/x86_64-suse-linux/lib compilers: Checking arg -lAtpSigHandler compilers: Found library: -lAtpSigHandler Library already in C list so skipping in C++ compilers: Checking arg -lAtpSigHCommData compilers: Found library: -lAtpSigHCommData Library already in C list so skipping in C++ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Found library: -limf Library already in C list so skipping in C++ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -lifcore compilers: Found library: -lifcore Library already in C list so skipping in C++ compilers: Checking arg -lifport compilers: Found library: -lifport Library already in C list so skipping in C++ compilers: Checking arg -lsvml compilers: Found library: -lsvml Library already in C list so skipping in C++ compilers: Checking arg -lirng compilers: Found library: -lirng Library already in C list so skipping in C++ compilers: Checking arg -lipgo compilers: Found library: -lipgo Library already in C list so skipping in C++ compilers: Checking arg -ldecimal compilers: Found library: -ldecimal Library already in C list so skipping in C++ compilers: Checking arg -lgcc_eh compilers: Found library: -lgcc_eh Library already in C list so skipping in C++ compilers: Checking arg -lirc compilers: Found library: -lirc Library already in C list so skipping in C++ compilers: Checking arg -lirc_s compilers: Found library: -lirc_s Library already in C list so skipping in C++ compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -ldl compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/lib64 compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Unknown arg -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg -lfmpich compilers: Checking arg -lmpichcxx compilers: Checking arg -Wl,--start-group compilers: Unknown arg -Wl,--start-group compilers: Checking arg -ldarshan compilers: Checking arg -ldarshan-stubs compilers: Checking arg -Wl,--end-group compilers: Unknown arg -Wl,--end-group compilers: Checking arg -lz compilers: Checking arg -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData compilers: Unknown arg -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData compilers: Checking arg -Wl,--undefined=_ATP_Data_Globals compilers: Unknown arg -Wl,--undefined=_ATP_Data_Globals compilers: Checking arg -Wl,--undefined=__atpHandlerInstall compilers: Unknown arg -Wl,--undefined=__atpHandlerInstall compilers: Checking arg -lpthread compilers: Checking arg -lmpichcxx_intel compilers: Found library: -lmpichcxx_intel compilers: Checking arg -lrt compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -lpmi compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lsma compilers: Checking arg -lpmi compilers: Checking arg -ldmapp compilers: Checking arg -lpthread compilers: Checking arg -lsci_intel_mpi compilers: Checking arg -lsci_intel compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lmpich_intel compilers: Checking arg -lrt compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -lpmi compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lpmi compilers: Checking arg -lpthread compilers: Checking arg -lalpslli compilers: Checking arg -lpthread compilers: Checking arg -lwlm_detect compilers: Checking arg -lalpsutil compilers: Checking arg -lpthread compilers: Checking arg -lrca compilers: Checking arg -lxpmem compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -ludreg compilers: Checking arg -lsci_intel compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -Wl,--as-needed,-lstdc++,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lstdc++,--no-as-needed compilers: Checking arg -Wl,--as-needed,-limf,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-limf,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lm,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lm,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lifcore,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lifcore,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lifport,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lifport,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lpthread,--no-as-needed" compilers: Unknown arg -Wl,--as-needed,-lpthread,--no-as-needed compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 compilers: Unknown arg -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 compilers: Checking arg -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/icpc6KkSDCas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/icpc6KkSDCas_.s compilers: Checking arg -mGLOB_dashboard_use_source_name compilers: Unknown arg -mGLOB_dashboard_use_source_name compilers: Checking arg -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Unknown arg -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_product_id_code=0x22006d8e compilers: Unknown arg -mGLOB_product_id_code=0x22006d8e compilers: Checking arg -mGLOB_extended_instructions=0x4000 compilers: Unknown arg -mGLOB_extended_instructions=0x4000 compilers: Checking arg -mGLOB_advanced_optim=TRUE compilers: Unknown arg -mGLOB_advanced_optim=TRUE compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mP2OPT_disam_type_based_disam=2 compilers: Unknown arg -mP2OPT_disam_type_based_disam=2 compilers: Checking arg -mP2OPT_disam_assume_ansi_c compilers: Unknown arg -mP2OPT_disam_assume_ansi_c compilers: Checking arg -mP2OPT_checked_disam_ansi_alias=TRUE compilers: Unknown arg -mP2OPT_checked_disam_ansi_alias=TRUE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mGLOB_opt_report_use_source_name compilers: Unknown arg -mGLOB_opt_report_use_source_name compilers: Checking arg -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Unknown arg -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=1 compilers: Unknown arg -mGLOB_offload_mode=1 compilers: Checking arg -mP2OPT_offload_unique_var_string=icpc0101287353117ZEmn5p compilers: Unknown arg -mP2OPT_offload_unique_var_string=icpc0101287353117ZEmn5p compilers: Checking arg -mGLOB_opt_level=2 compilers: Unknown arg -mGLOB_opt_level=2 compilers: Checking arg -mP2OPT_hlo_level=2 compilers: Unknown arg -mP2OPT_hlo_level=2 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so compilers: Checking arg -mPGOPTI_gen_threadsafe_level=0 compilers: Unknown arg -mPGOPTI_gen_threadsafe_level=0 compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/icpcslisigBt9P compilers: Unknown arg -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/icpcslisigBt9P compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/icpcscriptF6q2i6 compilers: Unknown arg -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/icpcscriptF6q2i6 compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-static" compilers: Unknown arg -static compilers: Checking arg "-m" compilers: Unknown arg -m compilers: Checking arg "elf_x86_64" compilers: Unknown arg elf_x86_64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/usr/x86_64-suse-linux/lib" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/usr/x86_64-suse-linux/lib" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest" compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/" compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/lib/../lib64/" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../" compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib/" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o" compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg "-ldl" compilers: Checking arg "-lfmpich" compilers: Checking arg "-lmpichcxx" compilers: Checking arg "-ldarshan" compilers: Checking arg "-ldarshan-stubs" compilers: Checking arg "-lz" compilers: Checking arg "-lpthread" compilers: Checking arg "-lsma" compilers: Checking arg "-lpmi" compilers: Checking arg "-ldmapp" compilers: Checking arg "-lsci_intel_mpi" compilers: Checking arg "-lsci_intel" compilers: Checking arg "-lmpich_intel" compilers: Checking arg "-lrt" compilers: Checking arg "-lugni" compilers: Checking arg "-lalpslli" compilers: Checking arg "-lwlm_detect" compilers: Checking arg "-lalpsutil" compilers: Checking arg "-lrca" compilers: Checking arg "-lxpmem" compilers: Checking arg "-ludreg" compilers: Checking arg "-lAtpSigHandler" compilers: Checking arg "-lAtpSigHCommData" compilers: Checking arg "-limf" compilers: Checking arg "-lifcore" compilers: Checking arg "-lifport" compilers: Checking arg "-lsvml" compilers: Checking arg "-lirng" compilers: Checking arg "-lipgo" compilers: Checking arg "-ldecimal" compilers: Checking arg "-lgcc_eh" compilers: Checking arg "-lirc" compilers: Checking arg "-lirc_s" compilers: Checking arg "-ldl" compilers: Checking arg "@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts" compilers: Unknown arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg "-lfmpich" compilers: Checking arg "-lmpichcxx" compilers: Checking arg "--start-group" compilers: Unknown arg --start-group compilers: Checking arg "-ldarshan" compilers: Checking arg "-ldarshan-stubs" compilers: Checking arg "--end-group" compilers: Unknown arg --end-group compilers: Checking arg "-lz" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-lAtpSigHandler" compilers: Checking arg "-lAtpSigHCommData" compilers: Checking arg "--undefined=_ATP_Data_Globals" compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg "--undefined=__atpHandlerInstall" compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg "-lpthread" compilers: Checking arg "-lmpichcxx_intel" compilers: Checking arg "-lrt" compilers: Checking arg "-lugni" compilers: Checking arg "-lpthread" compilers: Checking arg "-lpmi" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-limf" compilers: Checking arg "-lm" compilers: Checking arg "-ldl" compilers: Checking arg "-lsma" compilers: Checking arg "-lpmi" compilers: Checking arg "-ldmapp" compilers: Checking arg "-lpthread" compilers: Checking arg "-lsci_intel_mpi" compilers: Checking arg "-lsci_intel" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-limf" compilers: Checking arg "-lm" compilers: Checking arg "-ldl" compilers: Checking arg "-lmpich_intel" compilers: Checking arg "-lrt" compilers: Checking arg "-lugni" compilers: Checking arg "-lpthread" compilers: Checking arg "-lpmi" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-limf" compilers: Checking arg "-lm" compilers: Checking arg "-ldl" compilers: Checking arg "-lpmi" compilers: Checking arg "-lpthread" compilers: Checking arg "-lalpslli" compilers: Checking arg "-lpthread" compilers: Checking arg "-lwlm_detect" compilers: Checking arg "-lalpsutil" compilers: Checking arg "-lpthread" compilers: Checking arg "-lrca" compilers: Checking arg "-lxpmem" compilers: Checking arg "-lugni" compilers: Checking arg "-lpthread" compilers: Checking arg "-ludreg" compilers: Checking arg "-lsci_intel" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Checking arg "-limf" compilers: Checking arg "-lm" compilers: Checking arg "-ldl" compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lstdc++" compilers: Found library: -lstdc++ compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-limf" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lm" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lifcore" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lifport" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lpthread" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-limf" compilers: Checking arg "-lsvml" compilers: Checking arg "-lirng" compilers: Checking arg "-lstdc++" compilers: Checking arg "-lm" compilers: Checking arg "-lipgo" compilers: Checking arg "-ldecimal" compilers: Checking arg "-lstdc++" compilers: Checking arg "-lgcc" compilers: Skipping system library: -lgcc compilers: Checking arg "-lgcc_eh" compilers: Checking arg "-lirc" compilers: Checking arg "-lsvml" compilers: Checking arg "-lc" compilers: Skipping system library: -lc compilers: Checking arg "-lgcc" compilers: Skipping system library: -lgcc compilers: Checking arg "-lgcc_eh" compilers: Checking arg "-lirc_s" compilers: Checking arg "-ldl" compilers: Checking arg "-lc" compilers: Skipping system library: -lc compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o"" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_icpc8F1xhh.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_icpc8F1xhh.o compilers: Checking arg -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/icpcwarchxoYfVY compilers: Unknown arg -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/icpcwarchxoYfVY compilers: Checking arg -mGLOB_linker_version=2.25.0 compilers: Unknown arg -mGLOB_linker_version=2.25.0 compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/icpctempfilep27qff compilers: Unknown arg -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/icpctempfilep27qff compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_icpc8F1xhh.o compilers: Unknown arg -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_icpc8F1xhh.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.c compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.c compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/icpcalisfUmSyN compilers: Unknown arg -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/icpcalisfUmSyN compilers: Checking arg -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/icpcelisAy8LH3 compilers: Unknown arg -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/icpcelisAy8LH3 compilers: Checking arg -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/icpceobj7gMQQj compilers: Unknown arg -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/icpceobj7gMQQj compilers: Checking arg -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/icpcllisWZi5Zz compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/icpcllisWZi5Zz compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -static compilers: Unknown arg -static compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/lib64 compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/ compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/ compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/lib/../lib64/ compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/ compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/ compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../ compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib/ compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Checking arg -lfmpich compilers: Checking arg -lmpichcxx compilers: Checking arg -ldarshan compilers: Checking arg -ldarshan-stubs compilers: Checking arg -lz compilers: Checking arg -lpthread compilers: Checking arg -lsma compilers: Checking arg -lpmi compilers: Checking arg -ldmapp compilers: Checking arg -lsci_intel_mpi compilers: Checking arg -lsci_intel compilers: Checking arg -lmpich_intel compilers: Checking arg -lrt compilers: Checking arg -lugni compilers: Checking arg -lalpslli compilers: Checking arg -lwlm_detect compilers: Checking arg -lalpsutil compilers: Checking arg -lrca compilers: Checking arg -lxpmem compilers: Checking arg -ludreg compilers: Checking arg -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Checking arg -limf compilers: Checking arg -lifcore compilers: Checking arg -lifport compilers: Checking arg -lsvml compilers: Checking arg -lirng compilers: Checking arg -lipgo compilers: Checking arg -ldecimal compilers: Checking arg -lgcc_eh compilers: Checking arg -lirc compilers: Checking arg -lirc_s compilers: Checking arg -ldl compilers: Checking arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Unknown arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg -lfmpich compilers: Checking arg -lmpichcxx compilers: Checking arg --start-group compilers: Unknown arg --start-group compilers: Checking arg -ldarshan compilers: Checking arg -ldarshan-stubs compilers: Checking arg --end-group compilers: Unknown arg --end-group compilers: Checking arg -lz compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg -lpthread compilers: Checking arg -lmpichcxx_intel compilers: Checking arg -lrt compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -lpmi compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lsma compilers: Checking arg -lpmi compilers: Checking arg -ldmapp compilers: Checking arg -lpthread compilers: Checking arg -lsci_intel_mpi compilers: Checking arg -lsci_intel compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lmpich_intel compilers: Checking arg -lrt compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -lpmi compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg -lpmi compilers: Checking arg -lpthread compilers: Checking arg -lalpslli compilers: Checking arg -lpthread compilers: Checking arg -lwlm_detect compilers: Checking arg -lalpsutil compilers: Checking arg -lpthread compilers: Checking arg -lrca compilers: Checking arg -lxpmem compilers: Checking arg -lugni compilers: Checking arg -lpthread compilers: Checking arg -ludreg compilers: Checking arg -lsci_intel compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Checking arg -lm compilers: Checking arg -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lstdc++ compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -limf compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lm compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lifcore compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lifport compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lpthread compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -limf compilers: Checking arg -lsvml compilers: Checking arg -lirng compilers: Checking arg -lstdc++ compilers: Checking arg -lm compilers: Checking arg -lipgo compilers: Checking arg -ldecimal compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_eh compilers: Checking arg -lirc compilers: Checking arg -lsvml compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_eh compilers: Checking arg -lirc_s compilers: Checking arg -ldl compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64', '-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib', '-L/global/common/cori/software/darshan/3.0.1/lib', '-L/opt/cray/rca/1.0.0-6.21/lib64', '-L/opt/cray/alps/6.1.3-17.12/lib64', '-L/opt/cray/xpmem/0.1-4.5/lib64', '-L/opt/cray/dmapp/7.1.0-12.37/lib64', '-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64', '-L/opt/cray/ugni/6.0.12-2.1/lib64', '-L/opt/cray/udreg/2.3.2-4.6/lib64', '-L/opt/cray/pe/atp/2.0.2/libApp', '-L/opt/cray/wlm_detect/1.1.0-4.2/lib64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/usr/lib64/gcc/x86_64-suse-linux/4.8', '-L/usr/x86_64-suse-linux/lib', '-lmpichcxx_intel', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:383) TESTING: checkCxx11 from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:383) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: In file included from /usr/include/c++/4.8/random(35), from /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(4): /usr/include/c++/4.8/bits/c++0x_warning.h(32): error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(5): error: identifier "constexpr" is undefined template constexpr T Cubed( T x ) { return x*x*x; } ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(5): error: "T" is not a function or static data member template constexpr T Cubed( T x ) { return x*x*x; } ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(16): warning #12: parsing restarts here after previous syntax error /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(16): error: expected a ";" compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc (code 2) Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/include/c++/4.8/random(35), from /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(4): /usr/include/c++/4.8/bits/c++0x_warning.h(32): error: #error directive: This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(5): error: identifier "constexpr" is undefined template constexpr T Cubed( T x ) { return x*x*x; } ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(5): error: "T" is not a function or static data member template constexpr T Cubed( T x ) { return x*x*x; } ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(16): warning #12: parsing restarts here after previous syntax error /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc(16): error: expected a ";" compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc (code 2) PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:589) TESTING: checkFortranTypeSizes from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:589) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:648) TESTING: checkFortranNameMangling from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:648) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/confc.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:685) TESTING: checkFortranNameManglingDouble from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:685) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/confc.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o: In function `MAIN__': conftest.F:(.text+0x3c): undefined reference to `d1_chk_' Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:695) TESTING: checkFortranPreprocessor from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:695) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:719) TESTING: checkFortranDefineCompilerOption from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:719) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Defined make macro "FC_DEFINE_FLAG" to "-D" compilers: Fortran uses -D for defining macro Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O -DTesting /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC ================================================================================ TEST checkFortranLibraries from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:739) TESTING: checkFortranLibraries from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:739) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -V Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -v -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: stderr: ifort version 16.0.3 /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/fortcom -mGLOB_em64t=TRUE -mP1OPT_version=16.0-intel64 -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=480 "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include -I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/alps/6.1.3-17.12/include -I/opt/cray/xpmem/0.1-4.5/include -I/opt/cray/gni-headers/5.0.7-3.1/include -I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include -I/opt/cray/ugni/6.0.12-2.1/include -I/opt/cray/udreg/2.3.2-4.6/include -I/opt/cray/wlm_detect/1.1.0-4.2/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include -xCORE-AVX2 -static -D__CRAYXC -D__CRAY_HASWELL -D__CRAYXT_COMPUTE_LINUX_TARGET -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -v -O -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/lib64 -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts -lfmpich -lmpichcxx -Wl,--start-group -ldarshan -ldarshan-stubs -Wl,--end-group -lz -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData -Wl,--undefined=_ATP_Data_Globals -Wl,--undefined=__atpHandlerInstall -lpthread -lmpichf90_intel -lrt -lugni -lpmi -lm -lpthread -ldl -lsma -lpmi -lsma -lpmi -ldmapp -lpthread -lsci_intel_mpi -lsci_intel -lm -ldl -lmpich_intel -lrt -lugni -lpthread -lpmi -lm -ldl -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lxpmem -lugni -lpthread -ludreg -lsci_intel -lm -ldl -Wl,--as-needed,-limf,--no-as-needed -Wl,--as-needed,-lm,--no-as-needed -Wl,--as-needed,-lpthread,--no-as-needed" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/ifortvX5gYLas_.s -mGLOB_dashboard_use_source_name -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -mIPOPT_activate -mGLOB_product_id_code=0x22006d8f -mGLOB_extended_instructions=0x4000 -mGLOB_advanced_optim=TRUE -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mP2OPT_disam_type_based_disam=2 -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort0108663477152EFZ4k -mGLOB_opt_level=2 -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/ifortslisoVu57r -mIPOPT_mo_global_data -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/ifortscriptbd6ToT "-mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o" "--build-id" "-static" "-m" "elf_x86_64" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/x86_64-suse-linux/lib" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/x86_64-suse-linux/lib" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/opt/cray/dmapp/default/lib64" "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" "-L/global/common/cori/software/darshan/3.0.1/lib" "-L/opt/cray/rca/1.0.0-6.21/lib64" "-L/opt/cray/alps/6.1.3-17.12/lib64" "-L/opt/cray/xpmem/0.1-4.5/lib64" "-L/opt/cray/dmapp/7.1.0-12.37/lib64" "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" "-L/opt/cray/ugni/6.0.12-2.1/lib64" "-L/opt/cray/udreg/2.3.2-4.6/lib64" "-L/opt/cray/pe/atp/2.0.2/libApp" "-L/lib64" "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" "-o" "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest" "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin/for_main.o" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/" "-L/lib/../lib64" "-L/lib/../lib64/" "-L/usr/lib/../lib64" "-L/usr/lib/../lib64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/" "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../" "-L/lib64" "-L/lib/" "-L/usr/lib64" "-L/usr/lib" "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o" "-ldl" "-lfmpich" "-lmpichcxx" "-ldarshan" "-ldarshan-stubs" "-lz" "-lpthread" "-lsma" "-lpmi" "-ldmapp" "-lsci_intel_mpi" "-lsci_intel" "-lmpich_intel" "-lrt" "-lugni" "-lalpslli" "-lwlm_detect" "-lalpsutil" "-lrca" "-lxpmem" "-ludreg" "-lAtpSigHandler" "-lAtpSigHCommData" "-limf" "-lifcore" "-lifport" "-lsvml" "-lirng" "-lipgo" "-ldecimal" "-lgcc_eh" "-lirc" "-lirc_s" "-ldl" "@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts" "-lfmpich" "-lmpichcxx" "--start-group" "-ldarshan" "-ldarshan-stubs" "--end-group" "-lz" "--no-as-needed" "-lAtpSigHandler" "-lAtpSigHCommData" "--undefined=_ATP_Data_Globals" "--undefined=__atpHandlerInstall" "-lpthread" "-lmpichf90_intel" "-lrt" "-lugni" "-lpmi" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-lpthread" "-ldl" "-lsma" "-lpmi" "-lsma" "-lpmi" "-ldmapp" "-lpthread" "-lsci_intel_mpi" "-lsci_intel" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "-lmpich_intel" "-lrt" "-lugni" "-lpthread" "-lpmi" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "-lpmi" "-lpthread" "-lalpslli" "-lpthread" "-lwlm_detect" "-lalpsutil" "-lpthread" "-lrca" "-lxpmem" "-lugni" "-lpthread" "-ludreg" "-lsci_intel" "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" "-limf" "-lm" "-ldl" "--as-needed" "-limf" "--no-as-needed" "--as-needed" "-lm" "--no-as-needed" "--as-needed" "-lpthread" "--no-as-needed" "-lifport" "-lifcore" "-limf" "-lsvml" "-lm" "-lipgo" "-lirc" "-lpthread" "-lsvml" "-lc" "-lgcc" "-lgcc_eh" "-lirc_s" "-ldl" "-lc" "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o" "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_ifort9HjfyO.o -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/ifortwarchCxLMgK -mGLOB_linker_version=2.25.0 -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/iforttempfilexgeIHb -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_ifort9HjfyO.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -mIPOPT_object_files=T -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/ifortalisfFlg4G -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/ifortelisAtkuk8 -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/iforteobju60RAz -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/ifortlliscvopR0 ld /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o --build-id -static -m elf_x86_64 -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/lib64 -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest /opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin/for_main.o -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -ldl -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -lAtpSigHandler -lAtpSigHCommData -limf -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -ldl @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts -lfmpich -lmpichcxx --start-group -ldarshan -ldarshan-stubs --end-group -lz --no-as-needed -lAtpSigHandler -lAtpSigHCommData --undefined=_ATP_Data_Globals --undefined=__atpHandlerInstall -lpthread -lmpichf90_intel -lrt -lugni -lpmi -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -lpthread -ldl -lsma -lpmi -lsma -lpmi -ldmapp -lpthread -lsci_intel_mpi -lsci_intel -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl -lmpich_intel -lrt -lugni -lpthread -lpmi -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl -lpmi -lpthread -lalpslli -lpthread -lwlm_detect -lalpsutil -lpthread -lrca -lxpmem -lugni -lpthread -ludreg -lsci_intel -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -lm -ldl --as-needed -limf --no-as-needed --as-needed -lm --no-as-needed --as-needed -lpthread --no-as-needed -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lsvml -lc -lgcc -lgcc_eh -lirc_s -ldl -lc /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o Popping language FC compilers: Checking arg ifort compilers: Unknown arg ifort compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 16.0.3 compilers: Unknown arg 16.0.3 compilers: Checking arg /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/fortcom compilers: Unknown arg /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/fortcom compilers: Checking arg -mGLOB_em64t=TRUE compilers: Unknown arg -mGLOB_em64t=TRUE compilers: Checking arg -mP1OPT_version=16.0-intel64 compilers: Unknown arg -mP1OPT_version=16.0-intel64 compilers: Checking arg -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.diag compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=480 compilers: Unknown arg -mGLOB_gcc_version=480 compilers: Checking arg "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include compilers: Unknown arg "-mGLOB_options_string=-I/opt/cray/pe/mpt/7.4.0/gni/sma/include compilers: Checking arg -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include compilers: Found include directory: /opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include compilers: Checking arg -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include compilers: Found include directory: /opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include compilers: Checking arg -I/opt/cray/rca/1.0.0-6.21/include compilers: Found include directory: /opt/cray/rca/1.0.0-6.21/include compilers: Checking arg -I/opt/cray/alps/6.1.3-17.12/include compilers: Found include directory: /opt/cray/alps/6.1.3-17.12/include compilers: Checking arg -I/opt/cray/xpmem/0.1-4.5/include compilers: Found include directory: /opt/cray/xpmem/0.1-4.5/include compilers: Checking arg -I/opt/cray/gni-headers/5.0.7-3.1/include compilers: Found include directory: /opt/cray/gni-headers/5.0.7-3.1/include compilers: Checking arg -I/opt/cray/dmapp/7.1.0-12.37/include compilers: Found include directory: /opt/cray/dmapp/7.1.0-12.37/include compilers: Checking arg -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include compilers: Found include directory: /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include compilers: Checking arg -I/opt/cray/ugni/6.0.12-2.1/include compilers: Found include directory: /opt/cray/ugni/6.0.12-2.1/include compilers: Checking arg -I/opt/cray/udreg/2.3.2-4.6/include compilers: Found include directory: /opt/cray/udreg/2.3.2-4.6/include compilers: Checking arg -I/opt/cray/wlm_detect/1.1.0-4.2/include compilers: Found include directory: /opt/cray/wlm_detect/1.1.0-4.2/include compilers: Checking arg -I/opt/cray/krca/1.0.0-3.55/include compilers: Found include directory: /opt/cray/krca/1.0.0-3.55/include compilers: Checking arg -I/opt/cray-hss-devel/8.0.0/include compilers: Found include directory: /opt/cray-hss-devel/8.0.0/include compilers: Checking arg -xCORE-AVX2 compilers: Unknown arg -xCORE-AVX2 compilers: Checking arg -static compilers: Unknown arg -static compilers: Checking arg -D__CRAYXC compilers: Unknown arg -D__CRAYXC compilers: Checking arg -D__CRAY_HASWELL compilers: Unknown arg -D__CRAY_HASWELL compilers: Checking arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Unknown arg -D__CRAYXT_COMPUTE_LINUX_TARGET compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Found library directory: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Found library directory: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Found library directory: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Found library directory: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Found library directory: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Found library directory: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Found library directory: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Found library directory: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Found library directory: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Found library directory: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Found library directory: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Found library directory: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Found library directory: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -lfmpich compilers: Found library: -lfmpich Library already in C list so skipping in Fortran compilers: Checking arg -lmpichcxx compilers: Found library: -lmpichcxx Library already in C list so skipping in Fortran compilers: Checking arg -ldarshan compilers: Found library: -ldarshan Library already in C list so skipping in Fortran compilers: Checking arg -ldarshan-stubs compilers: Found library: -ldarshan-stubs Library already in C list so skipping in Fortran compilers: Checking arg -lz compilers: Found library: -lz Library already in C list so skipping in Fortran compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in Fortran compilers: Checking arg -lsma compilers: Found library: -lsma Library already in C list so skipping in Fortran compilers: Checking arg -lpmi compilers: Found library: -lpmi Library already in C list so skipping in Fortran compilers: Checking arg -ldmapp compilers: Found library: -ldmapp Library already in C list so skipping in Fortran compilers: Checking arg -lsci_intel_mpi compilers: Found library: -lsci_intel_mpi Library already in C list so skipping in Fortran compilers: Checking arg -lsci_intel compilers: Found library: -lsci_intel Library already in C list so skipping in Fortran compilers: Checking arg -lmpich_intel compilers: Found library: -lmpich_intel Library already in C list so skipping in Fortran compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in Fortran compilers: Checking arg -lugni compilers: Found library: -lugni Library already in C list so skipping in Fortran compilers: Checking arg -lalpslli compilers: Found library: -lalpslli Library already in C list so skipping in Fortran compilers: Checking arg -lwlm_detect compilers: Found library: -lwlm_detect Library already in C list so skipping in Fortran compilers: Checking arg -lalpsutil compilers: Found library: -lalpsutil Library already in C list so skipping in Fortran compilers: Checking arg -lrca compilers: Found library: -lrca Library already in C list so skipping in Fortran compilers: Checking arg -lxpmem compilers: Found library: -lxpmem Library already in C list so skipping in Fortran compilers: Checking arg -ludreg compilers: Found library: -ludreg Library already in C list so skipping in Fortran compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Found library directory: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Found library directory: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/x86_64-suse-linux/lib compilers: Found library directory: -L/usr/x86_64-suse-linux/lib compilers: Checking arg -lAtpSigHandler compilers: Found library: -lAtpSigHandler Library already in C list so skipping in Fortran compilers: Checking arg -lAtpSigHCommData compilers: Found library: -lAtpSigHCommData Library already in C list so skipping in Fortran compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Found library: -limf Library already in C list so skipping in Fortran compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -lifcore compilers: Found library: -lifcore Library already in C list so skipping in Fortran compilers: Checking arg -lifport compilers: Found library: -lifport Library already in C list so skipping in Fortran compilers: Checking arg -lsvml compilers: Found library: -lsvml Library already in C list so skipping in Fortran compilers: Checking arg -lirng compilers: Found library: -lirng Library already in C list so skipping in Fortran compilers: Checking arg -lipgo compilers: Found library: -lipgo Library already in C list so skipping in Fortran compilers: Checking arg -ldecimal compilers: Found library: -ldecimal Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_eh compilers: Found library: -lgcc_eh Library already in C list so skipping in Fortran compilers: Checking arg -lirc compilers: Found library: -lirc Library already in C list so skipping in Fortran compilers: Checking arg -lirc_s compilers: Found library: -lirc_s Library already in C list so skipping in Fortran compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/x86_64-suse-linux/lib compilers: Already in lflags so skipping: -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/lib64 compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Unknown arg -Wl,@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg -lfmpich compilers: Already in lflags: -lfmpich compilers: Checking arg -lmpichcxx compilers: Already in lflags: -lmpichcxx compilers: Checking arg -Wl,--start-group compilers: Unknown arg -Wl,--start-group compilers: Checking arg -ldarshan compilers: Already in lflags: -ldarshan compilers: Checking arg -ldarshan-stubs compilers: Already in lflags: -ldarshan-stubs compilers: Checking arg -Wl,--end-group compilers: Unknown arg -Wl,--end-group compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData compilers: Unknown arg -Wl,--no-as-needed,-lAtpSigHandler,-lAtpSigHCommData compilers: Checking arg -Wl,--undefined=_ATP_Data_Globals compilers: Unknown arg -Wl,--undefined=_ATP_Data_Globals compilers: Checking arg -Wl,--undefined=__atpHandlerInstall compilers: Unknown arg -Wl,--undefined=__atpHandlerInstall compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lmpichf90_intel compilers: Found library: -lmpichf90_intel compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lugni compilers: Already in lflags: -lugni compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lsma compilers: Already in lflags: -lsma compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -lsma compilers: Already in lflags: -lsma compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -ldmapp compilers: Already in lflags: -ldmapp compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lsci_intel_mpi compilers: Already in lflags: -lsci_intel_mpi compilers: Checking arg -lsci_intel compilers: Already in lflags: -lsci_intel compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpich_intel compilers: Already in lflags: -lmpich_intel compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lugni compilers: Already in lflags: -lugni compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lalpslli compilers: Already in lflags: -lalpslli compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lwlm_detect compilers: Already in lflags: -lwlm_detect compilers: Checking arg -lalpsutil compilers: Already in lflags: -lalpsutil compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lrca compilers: Already in lflags: -lrca compilers: Checking arg -lxpmem compilers: Already in lflags: -lxpmem compilers: Checking arg -lugni compilers: Already in lflags: -lugni compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -ludreg compilers: Already in lflags: -ludreg compilers: Checking arg -lsci_intel compilers: Already in lflags: -lsci_intel compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -Wl,--as-needed,-limf,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-limf,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lm,--no-as-needed compilers: Unknown arg -Wl,--as-needed,-lm,--no-as-needed compilers: Checking arg -Wl,--as-needed,-lpthread,--no-as-needed" compilers: Unknown arg -Wl,--as-needed,-lpthread,--no-as-needed compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 compilers: Unknown arg -mGLOB_compiler_bin_directory=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64 compilers: Checking arg -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/ifortvX5gYLas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/global/cscratch1/sd/gpau/ifortvX5gYLas_.s compilers: Checking arg -mGLOB_dashboard_use_source_name compilers: Unknown arg -mGLOB_dashboard_use_source_name compilers: Checking arg -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Unknown arg -mGLOB_dashboard_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_product_id_code=0x22006d8f compilers: Unknown arg -mGLOB_product_id_code=0x22006d8f compilers: Checking arg -mGLOB_extended_instructions=0x4000 compilers: Unknown arg -mGLOB_extended_instructions=0x4000 compilers: Checking arg -mGLOB_advanced_optim=TRUE compilers: Unknown arg -mGLOB_advanced_optim=TRUE compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mP2OPT_disam_type_based_disam=2 compilers: Unknown arg -mP2OPT_disam_type_based_disam=2 compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mGLOB_opt_report_use_source_name compilers: Unknown arg -mGLOB_opt_report_use_source_name compilers: Checking arg -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Unknown arg -mGLOB_opt_report_per_object_dir=/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mGLOB_offload_mode=1 compilers: Unknown arg -mGLOB_offload_mode=1 compilers: Checking arg -mP2OPT_offload_unique_var_string=ifort0108663477152EFZ4k compilers: Unknown arg -mP2OPT_offload_unique_var_string=ifort0108663477152EFZ4k compilers: Checking arg -mGLOB_opt_level=2 compilers: Unknown arg -mGLOB_opt_level=2 compilers: Checking arg -mP2OPT_hlo_level=2 compilers: Unknown arg -mP2OPT_hlo_level=2 compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libiml_attr.so compilers: Checking arg -mPGOPTI_gen_threadsafe_level=0 compilers: Unknown arg -mPGOPTI_gen_threadsafe_level=0 compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/ifortslisoVu57r compilers: Unknown arg -mIPOPT_source_files_list=/global/cscratch1/sd/gpau/ifortslisoVu57r compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/ifortscriptbd6ToT compilers: Unknown arg -mIPOPT_link_script_file=/global/cscratch1/sd/gpau/ifortscriptbd6ToT compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-static" compilers: Unknown arg -static compilers: Checking arg "-m" compilers: Unknown arg -m compilers: Checking arg "elf_x86_64" compilers: Unknown arg elf_x86_64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8" compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/x86_64-suse-linux/lib" compilers: Already in lflags so skipping: -L/usr/x86_64-suse-linux/lib compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8" compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/x86_64-suse-linux/lib" compilers: Already in lflags so skipping: -L/usr/x86_64-suse-linux/lib compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg "-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg "-L/opt/cray/dmapp/default/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg "-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib" compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg "-L/global/common/cori/software/darshan/3.0.1/lib" compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg "-L/opt/cray/rca/1.0.0-6.21/lib64" compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg "-L/opt/cray/alps/6.1.3-17.12/lib64" compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg "-L/opt/cray/xpmem/0.1-4.5/lib64" compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg "-L/opt/cray/dmapp/7.1.0-12.37/lib64" compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg "-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64" compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg "-L/opt/cray/ugni/6.0.12-2.1/lib64" compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg "-L/opt/cray/udreg/2.3.2-4.6/lib64" compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg "-L/opt/cray/pe/atp/2.0.2/libApp" compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/opt/cray/wlm_detect/1.1.0-4.2/lib64" compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest" compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin/for_main.o" compilers: Unknown arg /opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin/for_main.o compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/" compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64" compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/" compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/lib/../lib64/" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64/" compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/" compilers: Already in lflags so skipping: -L/usr/x86_64-suse-linux/lib compilers: Checking arg "-L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../" compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib/" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o" compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lfmpich" compilers: Already in lflags: -lfmpich compilers: Checking arg "-lmpichcxx" compilers: Already in lflags: -lmpichcxx compilers: Checking arg "-ldarshan" compilers: Already in lflags: -ldarshan compilers: Checking arg "-ldarshan-stubs" compilers: Already in lflags: -ldarshan-stubs compilers: Checking arg "-lz" compilers: Already in lflags: -lz compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lsma" compilers: Already in lflags: -lsma compilers: Checking arg "-lpmi" compilers: Already in lflags: -lpmi compilers: Checking arg "-ldmapp" compilers: Already in lflags: -ldmapp compilers: Checking arg "-lsci_intel_mpi" compilers: Already in lflags: -lsci_intel_mpi compilers: Checking arg "-lsci_intel" compilers: Already in lflags: -lsci_intel compilers: Checking arg "-lmpich_intel" compilers: Already in lflags: -lmpich_intel compilers: Checking arg "-lrt" compilers: Already in lflags: -lrt compilers: Checking arg "-lugni" compilers: Already in lflags: -lugni compilers: Checking arg "-lalpslli" compilers: Already in lflags: -lalpslli compilers: Checking arg "-lwlm_detect" compilers: Already in lflags: -lwlm_detect compilers: Checking arg "-lalpsutil" compilers: Already in lflags: -lalpsutil compilers: Checking arg "-lrca" compilers: Already in lflags: -lrca compilers: Checking arg "-lxpmem" compilers: Already in lflags: -lxpmem compilers: Checking arg "-ludreg" compilers: Already in lflags: -ludreg compilers: Checking arg "-lAtpSigHandler" compilers: Already in lflags: -lAtpSigHandler compilers: Checking arg "-lAtpSigHCommData" compilers: Already in lflags: -lAtpSigHCommData compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lifcore" compilers: Already in lflags: -lifcore compilers: Checking arg "-lifport" compilers: Already in lflags: -lifport compilers: Checking arg "-lsvml" compilers: Already in lflags: -lsvml compilers: Checking arg "-lirng" compilers: Already in lflags: -lirng compilers: Checking arg "-lipgo" compilers: Already in lflags: -lipgo compilers: Checking arg "-ldecimal" compilers: Already in lflags: -ldecimal compilers: Checking arg "-lgcc_eh" compilers: Already in lflags: -lgcc_eh compilers: Checking arg "-lirc" compilers: Already in lflags: -lirc compilers: Checking arg "-lirc_s" compilers: Already in lflags: -lirc_s compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "@/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts" compilers: Unknown arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg "-lfmpich" compilers: Already in lflags: -lfmpich compilers: Checking arg "-lmpichcxx" compilers: Already in lflags: -lmpichcxx compilers: Checking arg "--start-group" compilers: Unknown arg --start-group compilers: Checking arg "-ldarshan" compilers: Already in lflags: -ldarshan compilers: Checking arg "-ldarshan-stubs" compilers: Already in lflags: -ldarshan-stubs compilers: Checking arg "--end-group" compilers: Unknown arg --end-group compilers: Checking arg "-lz" compilers: Already in lflags: -lz compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-lAtpSigHandler" compilers: Already in lflags: -lAtpSigHandler compilers: Checking arg "-lAtpSigHCommData" compilers: Already in lflags: -lAtpSigHCommData compilers: Checking arg "--undefined=_ATP_Data_Globals" compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg "--undefined=__atpHandlerInstall" compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lmpichf90_intel" compilers: Already in lflags: -lmpichf90_intel compilers: Checking arg "-lrt" compilers: Already in lflags: -lrt compilers: Checking arg "-lugni" compilers: Already in lflags: -lugni compilers: Checking arg "-lpmi" compilers: Already in lflags: -lpmi compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lsma" compilers: Already in lflags: -lsma compilers: Checking arg "-lpmi" compilers: Already in lflags: -lpmi compilers: Checking arg "-lsma" compilers: Already in lflags: -lsma compilers: Checking arg "-lpmi" compilers: Already in lflags: -lpmi compilers: Checking arg "-ldmapp" compilers: Already in lflags: -ldmapp compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lsci_intel_mpi" compilers: Already in lflags: -lsci_intel_mpi compilers: Checking arg "-lsci_intel" compilers: Already in lflags: -lsci_intel compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lmpich_intel" compilers: Already in lflags: -lmpich_intel compilers: Checking arg "-lrt" compilers: Already in lflags: -lrt compilers: Checking arg "-lugni" compilers: Already in lflags: -lugni compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lpmi" compilers: Already in lflags: -lpmi compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lpmi" compilers: Already in lflags: -lpmi compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lalpslli" compilers: Already in lflags: -lalpslli compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lwlm_detect" compilers: Already in lflags: -lwlm_detect compilers: Checking arg "-lalpsutil" compilers: Already in lflags: -lalpsutil compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lrca" compilers: Already in lflags: -lrca compilers: Checking arg "-lxpmem" compilers: Already in lflags: -lxpmem compilers: Checking arg "-lugni" compilers: Already in lflags: -lugni compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-ludreg" compilers: Already in lflags: -ludreg compilers: Checking arg "-lsci_intel" compilers: Already in lflags: -lsci_intel compilers: Checking arg "-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin" compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-lifport" compilers: Already in lflags: -lifport compilers: Checking arg "-lifcore" compilers: Already in lflags: -lifcore compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lsvml" compilers: Already in lflags: -lsvml compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "-lipgo" compilers: Already in lflags: -lipgo compilers: Checking arg "-lirc" compilers: Already in lflags: -lirc compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lsvml" compilers: Already in lflags: -lsvml compilers: Checking arg "-lc" compilers: Found system library therefor skipping: -lc compilers: Checking arg "-lgcc" compilers: Found system library therefor skipping: -lgcc compilers: Checking arg "-lgcc_eh" compilers: Already in lflags: -lgcc_eh compilers: Checking arg "-lirc_s" compilers: Already in lflags: -lirc_s compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lc" compilers: Found system library therefor skipping: -lc compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Checking arg "/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o"" compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_ifort9HjfyO.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/global/cscratch1/sd/gpau/ipo_ifort9HjfyO.o compilers: Checking arg -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/ifortwarchCxLMgK compilers: Unknown arg -mIPOPT_whole_archive_fixup_file_name=/global/cscratch1/sd/gpau/ifortwarchCxLMgK compilers: Checking arg -mGLOB_linker_version=2.25.0 compilers: Unknown arg -mGLOB_linker_version=2.25.0 compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/iforttempfilexgeIHb compilers: Unknown arg -mGLOB_driver_tempfile_name=/global/cscratch1/sd/gpau/iforttempfilexgeIHb compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_ifort9HjfyO.o compilers: Unknown arg -mGLOB_obj_output_file=/global/cscratch1/sd/gpau/ipo_ifort9HjfyO.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=T compilers: Unknown arg -mIPOPT_object_files=T compilers: Checking arg -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/ifortalisfFlg4G compilers: Unknown arg -mIPOPT_assembly_files=/global/cscratch1/sd/gpau/ifortalisfFlg4G compilers: Checking arg -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/ifortelisAtkuk8 compilers: Unknown arg -mIPOPT_generated_tempfiles=/global/cscratch1/sd/gpau/ifortelisAtkuk8 compilers: Checking arg -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/iforteobju60RAz compilers: Unknown arg -mIPOPT_embedded_object_base_name=/global/cscratch1/sd/gpau/iforteobju60RAz compilers: Checking arg -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/ifortlliscvopR0 compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/global/cscratch1/sd/gpau/ifortlliscvopR0 compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crt1.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crti.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtbeginT.o compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -static compilers: Unknown arg -static compilers: Checking arg -m compilers: Unknown arg -m compilers: Checking arg elf_x86_64 compilers: Unknown arg elf_x86_64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/x86_64-suse-linux/lib compilers: Already in lflags so skipping: -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/x86_64-suse-linux/lib compilers: Already in lflags so skipping: -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 compilers: Checking arg -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/opt/cray/dmapp/default/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/default/lib64 compilers: Checking arg -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Already in lflags so skipping: -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib compilers: Checking arg -L/global/common/cori/software/darshan/3.0.1/lib compilers: Already in lflags so skipping: -L/global/common/cori/software/darshan/3.0.1/lib compilers: Checking arg -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Already in lflags so skipping: -L/opt/cray/rca/1.0.0-6.21/lib64 compilers: Checking arg -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Already in lflags so skipping: -L/opt/cray/alps/6.1.3-17.12/lib64 compilers: Checking arg -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Already in lflags so skipping: -L/opt/cray/xpmem/0.1-4.5/lib64 compilers: Checking arg -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Already in lflags so skipping: -L/opt/cray/dmapp/7.1.0-12.37/lib64 compilers: Checking arg -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Already in lflags so skipping: -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 compilers: Checking arg -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Already in lflags so skipping: -L/opt/cray/ugni/6.0.12-2.1/lib64 compilers: Checking arg -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Already in lflags so skipping: -L/opt/cray/udreg/2.3.2-4.6/lib64 compilers: Checking arg -L/opt/cray/pe/atp/2.0.2/libApp compilers: Already in lflags so skipping: -L/opt/cray/pe/atp/2.0.2/libApp compilers: Checking arg -L/lib64 compilers: Checking arg -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Already in lflags so skipping: -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest compilers: Checking arg /opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin/for_main.o compilers: Unknown arg /opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin/for_main.o compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/ compilers: Already in lflags so skipping: -L/usr/lib64/gcc/x86_64-suse-linux/4.8 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64 compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/ compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/lib/../lib64/ compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64/ compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/ compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/ compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/ compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/ compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/ compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/ compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/ compilers: Already in lflags so skipping: -L/usr/x86_64-suse-linux/lib compilers: Checking arg -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../ compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib/ compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Unknown arg /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lfmpich compilers: Already in lflags: -lfmpich compilers: Checking arg -lmpichcxx compilers: Already in lflags: -lmpichcxx compilers: Checking arg -ldarshan compilers: Already in lflags: -ldarshan compilers: Checking arg -ldarshan-stubs compilers: Already in lflags: -ldarshan-stubs compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lsma compilers: Already in lflags: -lsma compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -ldmapp compilers: Already in lflags: -ldmapp compilers: Checking arg -lsci_intel_mpi compilers: Already in lflags: -lsci_intel_mpi compilers: Checking arg -lsci_intel compilers: Already in lflags: -lsci_intel compilers: Checking arg -lmpich_intel compilers: Already in lflags: -lmpich_intel compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lugni compilers: Already in lflags: -lugni compilers: Checking arg -lalpslli compilers: Already in lflags: -lalpslli compilers: Checking arg -lwlm_detect compilers: Already in lflags: -lwlm_detect compilers: Checking arg -lalpsutil compilers: Already in lflags: -lalpsutil compilers: Checking arg -lrca compilers: Already in lflags: -lrca compilers: Checking arg -lxpmem compilers: Already in lflags: -lxpmem compilers: Checking arg -ludreg compilers: Already in lflags: -ludreg compilers: Checking arg -lAtpSigHandler compilers: Already in lflags: -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Already in lflags: -lAtpSigHCommData compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lifcore compilers: Already in lflags: -lifcore compilers: Checking arg -lifport compilers: Already in lflags: -lifport compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -lirng compilers: Already in lflags: -lirng compilers: Checking arg -lipgo compilers: Already in lflags: -lipgo compilers: Checking arg -ldecimal compilers: Already in lflags: -ldecimal compilers: Checking arg -lgcc_eh compilers: Already in lflags: -lgcc_eh compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -lirc_s compilers: Already in lflags: -lirc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Unknown arg @/global/common/cori/software/darshan/3.0.1/share/ld-opts/darshan-base-ld-opts compilers: Checking arg -lfmpich compilers: Already in lflags: -lfmpich compilers: Checking arg -lmpichcxx compilers: Already in lflags: -lmpichcxx compilers: Checking arg --start-group compilers: Unknown arg --start-group compilers: Checking arg -ldarshan compilers: Already in lflags: -ldarshan compilers: Checking arg -ldarshan-stubs compilers: Already in lflags: -ldarshan-stubs compilers: Checking arg --end-group compilers: Unknown arg --end-group compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lAtpSigHandler compilers: Already in lflags: -lAtpSigHandler compilers: Checking arg -lAtpSigHCommData compilers: Already in lflags: -lAtpSigHCommData compilers: Checking arg --undefined=_ATP_Data_Globals compilers: Unknown arg --undefined=_ATP_Data_Globals compilers: Checking arg --undefined=__atpHandlerInstall compilers: Unknown arg --undefined=__atpHandlerInstall compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lmpichf90_intel compilers: Already in lflags: -lmpichf90_intel compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lugni compilers: Already in lflags: -lugni compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lsma compilers: Already in lflags: -lsma compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -lsma compilers: Already in lflags: -lsma compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -ldmapp compilers: Already in lflags: -ldmapp compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lsci_intel_mpi compilers: Already in lflags: -lsci_intel_mpi compilers: Checking arg -lsci_intel compilers: Already in lflags: -lsci_intel compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lmpich_intel compilers: Already in lflags: -lmpich_intel compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -lugni compilers: Already in lflags: -lugni compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lpmi compilers: Already in lflags: -lpmi compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lalpslli compilers: Already in lflags: -lalpslli compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lwlm_detect compilers: Already in lflags: -lwlm_detect compilers: Checking arg -lalpsutil compilers: Already in lflags: -lalpsutil compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lrca compilers: Already in lflags: -lrca compilers: Checking arg -lxpmem compilers: Already in lflags: -lxpmem compilers: Checking arg -lugni compilers: Already in lflags: -lugni compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -ludreg compilers: Already in lflags: -ludreg compilers: Checking arg -lsci_intel compilers: Already in lflags: -lsci_intel compilers: Checking arg -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Already in lflags so skipping: -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lifport compilers: Already in lflags: -lifport compilers: Checking arg -lifcore compilers: Already in lflags: -lifcore compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lipgo compilers: Already in lflags: -lipgo compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lgcc_eh compilers: Already in lflags: -lgcc_eh compilers: Checking arg -lirc_s compilers: Already in lflags: -lirc_s compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/crtend.o compilers: Checking arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64', '-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib', '-L/global/common/cori/software/darshan/3.0.1/lib', '-L/opt/cray/rca/1.0.0-6.21/lib64', '-L/opt/cray/alps/6.1.3-17.12/lib64', '-L/opt/cray/xpmem/0.1-4.5/lib64', '-L/opt/cray/dmapp/7.1.0-12.37/lib64', '-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64', '-L/opt/cray/ugni/6.0.12-2.1/lib64', '-L/opt/cray/udreg/2.3.2-4.6/lib64', '-L/opt/cray/pe/atp/2.0.2/libApp', '-L/opt/cray/wlm_detect/1.1.0-4.2/lib64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/usr/lib64/gcc/x86_64-suse-linux/4.8', '-L/usr/x86_64-suse-linux/lib', '-lmpichf90_intel', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX compilers: Fortran libraries can be used from C++ Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1093) TESTING: checkFortranLinkingCxx from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1093) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/cxxobj.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/confc.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/cxxobj.o:(.eh_frame+0x11): undefined reference to `__gxx_personality_v0' /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/confc.o:(.eh_frame+0x11): undefined reference to `__gxx_personality_v0' Popping language FC Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/cxxobj.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/confc.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language FC compilers: Fortran can link C++ functions using the C++ compiler libraries ================================================================================ TEST checkFortran90 from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1128) TESTING: checkFortran90 from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1128) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1141) TESTING: checkFortran2003 from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1141) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1161) TESTING: checkFortran90Array from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1161) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/fooobj.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest stdout: arrays [0xa772a0 0xa772a0 0xa772a0] arrays [0xa77340 0xa773a0 0xa77340] pointers do not match! [0xad1140 0x9fc0] [0x817820] ERROR while running executable: Could not execute "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest": arrays [0xa772a0 0xa772a0 0xa772a0] arrays [0xa77340 0xa773a0 0xa77340] pointers do not match! [0xad1140 0x9fc0] [0x817820] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1248) TESTING: checkFortranModuleInclude from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1248) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/confdir -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/confdir -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/configtest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1314) TESTING: checkFortranModuleOutput from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1314) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -module /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/confdir -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1472) TESTING: setupFrameworkCompilers from config.compilers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/compilers.py:1472) ================================================================================ TEST configureClosure from config.utilities.closure(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure/conftest.c(6): error: expected an identifier int (^closure)(int);; ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.options.fortranCPP(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:105) Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/string.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 33 "/usr/include/string.h" 2 3 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 92 "/usr/include/string.h" 3 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 121 "/usr/include/string.h" 3 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 160 "/usr/include/string.h" 2 3 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 206 "/usr/include/string.h" 3 # 232 "/usr/include/string.h" 3 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 259 "/usr/include/string.h" 3 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 277 "/usr/include/string.h" 3 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 311 "/usr/include/string.h" 3 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 338 "/usr/include/string.h" 3 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 373 "/usr/include/string.h" 3 # 391 "/usr/include/string.h" 3 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 438 "/usr/include/string.h" 3 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 485 "/usr/include/string.h" 3 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 513 "/usr/include/string.h" 3 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 549 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 604 "/usr/include/string.h" 3 # 1 "/usr/include/bits/string.h" 1 3 # 629 "/usr/include/string.h" 2 3 # 1 "/usr/include/bits/string2.h" 1 3 # 632 "/usr/include/string.h" 2 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 25 "/usr/include/stdlib.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 33 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 42 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 65 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 83 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 96 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 # 56 "/usr/include/stdlib.h" 3 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 82 "/usr/include/stdlib.h" 3 # 94 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 273 "/usr/include/stdlib.h" 3 extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) atoi (const char *__nptr) { return (int) strtol (__nptr, (char **) ((void*)0), 10); } extern __inline __attribute__ ((__gnu_inline__)) long int __attribute__ ((__nothrow__ , __leaf__)) atol (const char *__nptr) { return strtol (__nptr, (char **) ((void*)0), 10); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) long long int __attribute__ ((__nothrow__ , __leaf__)) atoll (const char *__nptr) { return strtoll (__nptr, (char **) ((void*)0), 10); } extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 315 "/usr/include/stdlib.h" 2 3 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 25 "/usr/include/alloca.h" 2 3 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 551 "/usr/include/stdlib.h" 3 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 573 "/usr/include/stdlib.h" 3 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 633 "/usr/include/stdlib.h" 3 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 656 "/usr/include/stdlib.h" 3 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 710 "/usr/include/stdlib.h" 3 extern int system (const char *__command) ; # 727 "/usr/include/stdlib.h" 3 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; # 1 "/usr/include/bits/stdlib-bsearch.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) void * bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) { size_t __l, __u, __idx; const void *__p; int __comparison; __l = 0; __u = __nmemb; while (__l < __u) { __idx = (__l + __u) / 2; __p = (void *) (((const char *) __base) + (__idx * __size)); __comparison = (*__compar) (__key, __p); if (__comparison < 0) __u = __idx; else if (__comparison > 0) __l = __idx + 1; else return (void *) __p; } return ((void*)0); } # 761 "/usr/include/stdlib.h" 2 3 extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 935 "/usr/include/stdlib.h" 3 # 946 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) double __attribute__ ((__nothrow__ , __leaf__)) atof (const char *__nptr) { return strtod (__nptr, (char **) ((void*)0)); } # 956 "/usr/include/stdlib.h" 2 3 # 964 "/usr/include/stdlib.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 217 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 5 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/stat.h" 1 3 # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 38 "/usr/include/sys/stat.h" 2 3 # 61 "/usr/include/sys/stat.h" 3 # 80 "/usr/include/sys/stat.h" 3 # 102 "/usr/include/sys/stat.h" 3 # 1 "/usr/include/bits/stat.h" 1 3 # 39 "/usr/include/bits/stat.h" 3 struct stat { __dev_t st_dev; __ino_t st_ino; # 61 "/usr/include/bits/stat.h" 3 __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 __syscall_slong_t __glibc_reserved[3]; # 115 "/usr/include/bits/stat.h" 3 }; # 170 "/usr/include/bits/stat.h" 3 # 189 "/usr/include/bits/stat.h" 3 # 204 "/usr/include/bits/stat.h" 3 # 106 "/usr/include/sys/stat.h" 2 3 # 124 "/usr/include/sys/stat.h" 3 # 139 "/usr/include/sys/stat.h" 3 # 150 "/usr/include/sys/stat.h" 3 extern int stat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 232 "/usr/include/sys/stat.h" 3 extern int fstatat (int __fd, const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 251 "/usr/include/sys/stat.h" 3 # 258 "/usr/include/sys/stat.h" 3 extern int lstat (const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 281 "/usr/include/sys/stat.h" 3 extern int chmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (const char *__file, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)); extern int fchmodat (int __fd, const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__ , __leaf__)); extern int mkdir (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mknod (const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, const char *__path, __mode_t __mode) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, const char *__path, const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, const struct timespec __times[2]) __attribute__ ((__nothrow__ , __leaf__)); # 396 "/usr/include/sys/stat.h" 3 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))); # 430 "/usr/include/sys/stat.h" 3 # 442 "/usr/include/sys/stat.h" 3 extern int __xmknod (int __ver, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 5))); extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) stat (const char *__path, struct stat *__statbuf) { return __xstat (1, __path, __statbuf); } extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) lstat (const char *__path, struct stat *__statbuf) { return __lxstat (1, __path, __statbuf); } extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) fstat (int __fd, struct stat *__statbuf) { return __fxstat (1, __fd, __statbuf); } extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) fstatat (int __fd, const char *__filename, struct stat *__statbuf, int __flag) { return __fxstatat (1, __fd, __filename, __statbuf, __flag); } extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) mknod (const char *__path, __mode_t __mode, __dev_t __dev) { return __xmknod (0, __path, __mode, &__dev); } extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) mknodat (int __fd, const char *__path, __mode_t __mode, __dev_t __dev) { return __xmknodat (0, __fd, __path, __mode, &__dev); } # 531 "/usr/include/sys/stat.h" 3 # 6 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 28 "/usr/include/time.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 38 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 37 "/usr/include/bits/time.h" 3 # 58 "/usr/include/bits/time.h" 3 # 95 "/usr/include/bits/time.h" 3 # 42 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 217 "/usr/include/time.h" 3 # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 414 "/usr/include/time.h" 3 # 429 "/usr/include/time.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 typedef __time_t time_t; # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 26 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 28 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 37 "/usr/include/bits/time.h" 3 # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 30 "/usr/include/sys/time.h" 2 3 # 50 "/usr/include/sys/time.h" 3 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 157 "/usr/include/sys/time.h" 3 # 188 "/usr/include/sys/time.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 1 3 # 1 "/usr/include/math.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 27 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_val.h" 1 3 # 33 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_valf.h" 1 3 # 35 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_vall.h" 1 3 # 36 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/inf.h" 1 3 # 39 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/nan.h" 1 3 # 42 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/mathdef.h" 1 3 typedef float float_t; typedef double double_t; # 40 "/usr/include/bits/mathdef.h" 3 # 46 "/usr/include/math.h" 2 3 # 64 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern double acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 124 "/usr/include/bits/mathcalls.h" 3 extern double expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern float acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 124 "/usr/include/bits/mathcalls.h" 3 extern float expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); # 89 "/usr/include/math.h" 2 3 # 120 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern long double acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 124 "/usr/include/bits/mathcalls.h" 3 extern long double expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); # 133 "/usr/include/math.h" 2 3 extern int signgam; enum { FP_NAN = 0, FP_INFINITE = 1, FP_ZERO = 2, FP_SUBNORMAL = 3, FP_NORMAL = 4 }; # 219 "/usr/include/math.h" 3 # 231 "/usr/include/math.h" 3 # 243 "/usr/include/math.h" 3 # 259 "/usr/include/math.h" 3 # 271 "/usr/include/math.h" 3 # 298 "/usr/include/math.h" 3 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 351 "/usr/include/math.h" 3 # 363 "/usr/include/math.h" 3 # 381 "/usr/include/math.h" 3 # 400 "/usr/include/math.h" 3 # 423 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathinline.h" 1 3 # 119 "/usr/include/bits/mathinline.h" 3 extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) __signbitf (float __x) { int __m; __asm ("pmovmskb %1, %0" : "=r" (__m) : "x" (__x)); return (__m & 0x8) != 0; } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) __signbit (double __x) { int __m; __asm ("pmovmskb %1, %0" : "=r" (__m) : "x" (__x)); return (__m & 0x80) != 0; } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) __signbitl (long double __x) { __extension__ union { long double __l; int __i[3]; } __u = { __l: __x }; return (__u.__i[2] & 0x8000) != 0; } # 386 "/usr/include/bits/mathinline.h" 3 # 427 "/usr/include/math.h" 2 3 # 445 "/usr/include/math.h" 3 # 453 "/usr/include/math.h" 3 # 461 "/usr/include/math.h" 3 # 469 "/usr/include/math.h" 3 # 477 "/usr/include/math.h" 3 # 485 "/usr/include/math.h" 3 # 20 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 2 3 # 38 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 52 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 68 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 79 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 87 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 98 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 106 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 129 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 143 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 172 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 188 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 extern int fpclassifyf ( float __x ) ; extern int fpclassify ( double __x ) ; extern int fpclassifyd ( double __x ) ; extern int fpclassifyl ( long double __x ) ; extern int __fpclassifyf ( float __x ) ; extern int __fpclassify ( double __x ) ; extern int __fpclassifyd ( double __x ) ; extern int __fpclassifyl ( long double __x ) ; extern int isinff ( float __x ) ; extern int isinf ( double __x ) ; extern int isinfd ( double __x ) ; extern int isinfl ( long double __x ) ; extern int __isinff ( float __x ) ; extern int __isinf ( double __x ) ; extern int __isinfd ( double __x ) ; extern int __isinfl ( long double __x ) ; extern int isnanf ( float __x ) ; extern int isnan ( double __x ) ; extern int isnand ( double __x ) ; extern int isnanl ( long double __x ) ; extern int __isnanf ( float __x ) ; extern int __isnan ( double __x ) ; extern int __isnand ( double __x ) ; extern int __isnanl ( long double __x ) ; extern int isnormalf ( float __x ) ; extern int isnormal ( double __x ) ; extern int isnormald ( double __x ) ; extern int isnormall ( long double __x ) ; extern int __isnormalf ( float __x ) ; extern int __isnormal ( double __x ) ; extern int __isnormald ( double __x ) ; extern int __isnormall ( long double __x ) ; extern int isfinitef ( float __x ) ; extern int isfinite ( double __x ) ; extern int isfinited ( double __x ) ; extern int isfinitel ( long double __x ) ; extern int __isfinitef ( float __x ) ; extern int __isfinite ( double __x ) ; extern int __isfinited ( double __x ) ; extern int __isfinitel ( long double __x ) ; extern int finitef ( float __x ) ; extern int finite ( double __x ) ; extern int finited ( double __x ) ; extern int finitel ( long double __x ) ; extern int __finitef ( float __x ) ; extern int __finite ( double __x ) ; extern int __finited ( double __x ) ; extern int __finitel ( long double __x ) ; extern int signbitf ( float __x ) ; extern int signbit ( double __x ) ; extern int signbitd ( double __x ) ; extern int signbitl ( long double __x ) ; extern int __signbitf ( float __x ) ; extern int __signbit ( double __x ) ; extern int __signbitd ( double __x ) ; extern int __signbitl ( long double __x ) ; # 311 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 332 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 339 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 extern int isgreaterf( float __xf, float __yf ); extern int isgreater( double __xd, double __yd ); extern int isgreaterl( long double __xl, long double __yl ); extern int __isgreaterf( float __xf, float __yf ); extern int __isgreater( double __xd, double __yd ); extern int __isgreaterl( long double __xl, long double __yl ); extern int isgreaterequalf( float __xf, float __yf ); extern int isgreaterequal( double __xd, double __yd ); extern int isgreaterequall( long double __xl, long double __yl ); extern int __isgreaterequalf( float __xf, float __yf ); extern int __isgreaterequal( double __xd, double __yd ); extern int __isgreaterequall( long double __xl, long double __yl ); extern int islessf( float __xf, float __yf ); extern int isless( double __xd, double __yd ); extern int islessl( long double __xl, long double __yl ); extern int __islessf( float __xf, float __yf ); extern int __isless( double __xd, double __yd ); extern int __islessl( long double __xl, long double __yl ); extern int islessequalf( float __xf, float __yf ); extern int islessequal( double __xd, double __yd ); extern int islessequall( long double __xl, long double __yl ); extern int __islessequalf( float __xf, float __yf ); extern int __islessequal( double __xd, double __yd ); extern int __islessequall( long double __xl, long double __yl ); extern int islessgreaterf( float __xf, float __yf ); extern int islessgreater( double __xd, double __yd ); extern int islessgreaterl( long double __xl, long double __yl ); extern int __islessgreaterf( float __xf, float __yf ); extern int __islessgreater( double __xd, double __yd ); extern int __islessgreaterl( long double __xl, long double __yl ); extern int isunorderedf( float __xf, float __yf ); extern int isunordered( double __xd, double __yd ); extern int isunorderedl( long double __xl, long double __yl ); extern int __isunorderedf( float __xf, float __yf ); extern int __isunordered( double __xd, double __yd ); extern int __isunorderedl( long double __xl, long double __yl ); # 405 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 412 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 428 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 438 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 extern double cot( double __x ); extern float cotf( float __x ); extern long double cotl( long double __x ); extern double cosd( double __x ); extern float cosdf( float __x ); extern long double cosdl( long double __x ); extern double sind( double __x ); extern float sindf( float __x ); extern long double sindl( long double __x ); extern double tand( double __x ); extern float tandf( float __x ); extern long double tandl( long double __x ); extern double cotd( double __x ); extern float cotdf( float __x ); extern long double cotdl( long double __x ); extern double acosd( double __x ); extern float acosdf( float __x ); extern long double acosdl( long double __x ); extern double asind( double __x ); extern float asindf( float __x ); extern long double asindl( long double __x ); extern double atand( double __x ); extern float atandf( float __x ); extern long double atandl( long double __x ); extern double atand2( double __y, double __x ); extern float atand2f( float __y, float __x ); extern long double atand2l( long double __y, long double __x ); extern double atan2d( double __y, double __x ); extern float atan2df( float __y, float __x ); extern long double atan2dl( long double __y, long double __x ); extern void sincosd( double __x, double *__psin, double *__pcos ); extern void sincosdf( float __x, float *__psin, float *__pcos ); extern void sincosdl( long double __x, long double *__psin, long double *__pcos ); # 504 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 extern void sinhcosh( double __x, double *__psinh, double *__pcosh ); extern void sinhcoshf( float __x, float *__psinh, float *__pcosh ); extern void sinhcoshl( long double __x, long double *__psinh, long double *__pcosh ); # 518 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 545 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 559 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 600 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 623 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 642 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 653 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 662 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 extern double invsqrt( double __x ); extern float invsqrtf( float __x ); extern long double invsqrtl( long double __x ); # 681 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 extern double cdfnorm( double __x ); extern float cdfnormf( float __x ); extern double cdfnorminv( double __x ); extern float cdfnorminvf( float __x ); extern double erfinv( double __x ); extern float erfinvf( float __x ); extern long double erfinvl( long double __x ); extern double erfcinv( double __x ); extern float erfcinvf( float __x ); extern double gamma_r( double __x, int *__signgam ); extern float gammaf_r( float __x, int *__signgam ); extern long double gammal_r( long double __x, int *__signgam ); # 707 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 723 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 741 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 761 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 780 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 795 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 804 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 827 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 extern double annuity( double __x, double __y ); extern double compound( double __x, double __y ); extern float annuityf( float __x, float __y ); extern long double annuityl( long double __x, long double __y ); extern float compoundf( float __x, float __y ); extern long double compoundl( long double __x, long double __y ); # 847 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 865 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 876 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 917 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 938 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 1108 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 1122 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 typedef struct ____exception { int type; const char *name; double arg1; double arg2; double retval; } ___exception; # 1143 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 typedef struct ____exceptionf { int type; const char *name; float arg1; float arg2; float retval; } ___exceptionf; typedef struct ____exceptionl { int type; const char *name; long double arg1; long double arg2; long double retval; } ___exceptionl; extern int matherrf( struct ____exceptionf *__e ); extern int matherrl( struct ____exceptionl *__e ); # 1175 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 typedef int ( *___pmatherr )( struct ____exception *__e ); typedef int ( *___pmatherrf )( struct ____exceptionf *__e ); typedef int ( *___pmatherrl )( struct ____exceptionl *__e ); extern ___pmatherr __libm_setusermatherr( ___pmatherr __user_matherr ); extern ___pmatherrf __libm_setusermatherrf( ___pmatherrf __user_matherrf ); extern ___pmatherrl __libm_setusermatherrl( ___pmatherrl __user_matherrl ); # 1213 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 extern _LIB_VERSION_TYPE _LIB_VERSIONIMF; # 1227 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 1440 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATH_H" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/sys/uio.h" 1 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 217 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 24 "/usr/include/sys/uio.h" 2 3 # 1 "/usr/include/bits/uio.h" 1 3 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/sys/uio.h" 2 3 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 92 "/usr/include/sys/uio.h" 3 # 119 "/usr/include/sys/uio.h" 3 # 27 "/usr/include/sys/socket.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 29 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/bits/socket.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 28 "/usr/include/bits/socket.h" 2 3 typedef __socklen_t socklen_t; # 1 "/usr/include/bits/socket_type.h" 1 3 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/bits/socket.h" 2 3 # 84 "/usr/include/bits/socket.h" 3 # 129 "/usr/include/bits/socket.h" 3 # 141 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/bits/sockaddr.h" 1 3 typedef unsigned short int sa_family_t; # 147 "/usr/include/bits/socket.h" 2 3 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, # 184 "/usr/include/bits/socket.h" 3 MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 271 "/usr/include/bits/socket.h" 3 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); extern __inline __attribute__ ((__gnu_inline__)) struct cmsghdr * __attribute__ ((__nothrow__ , __leaf__)) __cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) { if ((size_t) __cmsg->cmsg_len < sizeof (struct cmsghdr)) return (struct cmsghdr *) 0; __cmsg = (struct cmsghdr *) ((unsigned char *) __cmsg + (((__cmsg->cmsg_len) + sizeof (size_t) - 1) & (size_t) ~(sizeof (size_t) - 1))); if ((unsigned char *) (__cmsg + 1) > ((unsigned char *) __mhdr->msg_control + __mhdr->msg_controllen) || ((unsigned char *) __cmsg + (((__cmsg->cmsg_len) + sizeof (size_t) - 1) & (size_t) ~(sizeof (size_t) - 1)) > ((unsigned char *) __mhdr->msg_control + __mhdr->msg_controllen))) return (struct cmsghdr *) 0; return __cmsg; } enum { SCM_RIGHTS = 0x01 }; # 318 "/usr/include/bits/socket.h" 3 # 343 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/asm/socket.h" 1 3 # 1 "/usr/include/asm-generic/socket.h" 1 3 # 1 "/usr/include/asm/sockios.h" 1 3 # 1 "/usr/include/asm-generic/sockios.h" 1 3 # 12 "/usr/include/asm-generic/sockios.h" 3 # 2 "/usr/include/asm/sockios.h" 2 3 # 5 "/usr/include/asm-generic/socket.h" 2 3 # 34 "/usr/include/asm-generic/socket.h" 3 # 2 "/usr/include/asm/socket.h" 2 3 # 346 "/usr/include/bits/socket.h" 2 3 # 377 "/usr/include/bits/socket.h" 3 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/sys/socket.h" 2 3 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 98 "/usr/include/sys/socket.h" 3 # 108 "/usr/include/sys/socket.h" 3 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 196 "/usr/include/sys/socket.h" 3 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 214 "/usr/include/sys/socket.h" 3 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 254 "/usr/include/sys/socket.h" 3 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 217 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 23 "/usr/include/malloc.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 24 "/usr/include/malloc.h" 2 3 # 1 "/usr/include/stdio.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 34 "/usr/include/stdio.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 36 "/usr/include/stdio.h" 2 3 struct _IO_FILE; typedef struct _IO_FILE FILE; typedef struct _IO_FILE __FILE; # 1 "/usr/include/libio.h" 1 3 # 1 "/usr/include/_G_config.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 16 "/usr/include/_G_config.h" 2 3 # 1 "/usr/include/wchar.h" 1 3 # 78 "/usr/include/wchar.h" 3 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 894 "/usr/include/wchar.h" 3 # 21 "/usr/include/_G_config.h" 2 3 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 43 "/usr/include/_G_config.h" 3 # 32 "/usr/include/libio.h" 2 3 # 46 "/usr/include/libio.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdarg.h" 1 3 # 119 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdarg.h" 3 typedef __builtin_va_list va_list; typedef __builtin_va_list __gnuc_va_list; # 50 "/usr/include/libio.h" 2 3 # 76 "/usr/include/libio.h" 3 # 85 "/usr/include/libio.h" 3 # 111 "/usr/include/libio.h" 3 # 123 "/usr/include/libio.h" 3 # 142 "/usr/include/libio.h" 3 struct _IO_jump_t; struct _IO_FILE; # 154 "/usr/include/libio.h" 3 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 177 "/usr/include/libio.h" 3 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 244 "/usr/include/libio.h" 3 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 293 "/usr/include/libio.h" 3 __off64_t _offset; # 302 "/usr/include/libio.h" 3 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 332 "/usr/include/libio.h" 3 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 384 "/usr/include/libio.h" 3 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 416 "/usr/include/libio.h" 3 # 430 "/usr/include/libio.h" 3 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 463 "/usr/include/libio.h" 3 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__ , __leaf__)); # 520 "/usr/include/libio.h" 3 # 75 "/usr/include/stdio.h" 2 3 typedef __gnuc_va_list va_list; # 86 "/usr/include/stdio.h" 3 typedef __off_t off_t; # 100 "/usr/include/stdio.h" 3 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 147 "/usr/include/stdio.h" 3 # 1 "/usr/include/bits/stdio_lim.h" 1 3 # 34 "/usr/include/bits/stdio_lim.h" 3 # 165 "/usr/include/stdio.h" 2 3 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (const char *__filename) __attribute__ ((__nothrow__ , __leaf__)); extern int rename (const char *__old, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern int renameat (int __oldfd, const char *__old, int __newfd, const char *__new) __attribute__ ((__nothrow__ , __leaf__)); extern FILE *tmpfile (void) ; # 203 "/usr/include/stdio.h" 3 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *tempnam (const char *__dir, const char *__pfx) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); extern int fflush_unlocked (FILE *__stream); # 264 "/usr/include/stdio.h" 3 extern FILE *fopen (const char *__restrict __filename, const char *__restrict __modes) ; extern FILE *freopen (const char *__restrict __filename, const char *__restrict __modes, FILE *__restrict __stream) ; # 295 "/usr/include/stdio.h" 3 # 303 "/usr/include/stdio.h" 3 extern FILE *fdopen (int __fd, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; # 316 "/usr/include/stdio.h" 3 extern FILE *fmemopen (void *__s, size_t __len, const char *__modes) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int fprintf (FILE *__restrict __stream, const char *__restrict __format, ...); extern int printf (const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 409 "/usr/include/stdio.h" 3 extern int vdprintf (int __fd, const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) ; extern int scanf (const char *__restrict __format, ...) ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __attribute__ ((__nothrow__ , __leaf__)); extern int fscanf (FILE *__restrict __stream, const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (const char *__restrict __s, const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__ , __leaf__)); # 462 "/usr/include/stdio.h" 3 extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); extern int vfscanf (FILE *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (const char *__restrict __s, const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 521 "/usr/include/stdio.h" 3 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) __attribute__ ((__deprecated__)); # 652 "/usr/include/stdio.h" 3 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (const char *__restrict __s, FILE *__restrict __stream); extern int puts (const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s); # 729 "/usr/include/stdio.h" 3 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream); extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 791 "/usr/include/stdio.h" 3 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, const fpos_t *__pos); # 815 "/usr/include/stdio.h" 3 # 823 "/usr/include/stdio.h" 3 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void perror (const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 extern int sys_nerr; extern const char *const sys_errlist[]; # 854 "/usr/include/stdio.h" 2 3 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern FILE *popen (const char *__command, const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__ , __leaf__)); # 907 "/usr/include/stdio.h" 3 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__ , __leaf__)); # 930 "/usr/include/stdio.h" 3 # 1 "/usr/include/bits/stdio.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) int vprintf (const char *__restrict __fmt, __gnuc_va_list __arg) { return vfprintf (stdout, __fmt, __arg); } extern __inline __attribute__ ((__gnu_inline__)) int getchar (void) { return _IO_getc (stdin); } extern __inline __attribute__ ((__gnu_inline__)) int fgetc_unlocked (FILE *__fp) { return (__builtin_expect (((__fp)->_IO_read_ptr >= (__fp)->_IO_read_end), 0) ? __uflow (__fp) : *(unsigned char *) (__fp)->_IO_read_ptr++); } extern __inline __attribute__ ((__gnu_inline__)) int getc_unlocked (FILE *__fp) { return (__builtin_expect (((__fp)->_IO_read_ptr >= (__fp)->_IO_read_end), 0) ? __uflow (__fp) : *(unsigned char *) (__fp)->_IO_read_ptr++); } extern __inline __attribute__ ((__gnu_inline__)) int getchar_unlocked (void) { return (__builtin_expect (((stdin)->_IO_read_ptr >= (stdin)->_IO_read_end), 0) ? __uflow (stdin) : *(unsigned char *) (stdin)->_IO_read_ptr++); } extern __inline __attribute__ ((__gnu_inline__)) int putchar (int __c) { return _IO_putc (__c, stdout); } extern __inline __attribute__ ((__gnu_inline__)) int fputc_unlocked (int __c, FILE *__stream) { return (__builtin_expect (((__stream)->_IO_write_ptr >= (__stream)->_IO_write_end), 0) ? __overflow (__stream, (unsigned char) (__c)) : (unsigned char) (*(__stream)->_IO_write_ptr++ = (__c))); } extern __inline __attribute__ ((__gnu_inline__)) int putc_unlocked (int __c, FILE *__stream) { return (__builtin_expect (((__stream)->_IO_write_ptr >= (__stream)->_IO_write_end), 0) ? __overflow (__stream, (unsigned char) (__c)) : (unsigned char) (*(__stream)->_IO_write_ptr++ = (__c))); } extern __inline __attribute__ ((__gnu_inline__)) int putchar_unlocked (int __c) { return (__builtin_expect (((stdout)->_IO_write_ptr >= (stdout)->_IO_write_end), 0) ? __overflow (stdout, (unsigned char) (__c)) : (unsigned char) (*(stdout)->_IO_write_ptr++ = (__c))); } # 120 "/usr/include/bits/stdio.h" 3 extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) feof_unlocked (FILE *__stream) { return (((__stream)->_flags & 0x10) != 0); } extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) ferror_unlocked (FILE *__stream) { return (((__stream)->_flags & 0x20) != 0); } # 167 "/usr/include/bits/stdio.h" 3 # 188 "/usr/include/bits/stdio.h" 3 # 935 "/usr/include/stdio.h" 2 3 # 942 "/usr/include/stdio.h" 3 # 25 "/usr/include/malloc.h" 2 3 # 33 "/usr/include/malloc.h" 3 extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *pvalloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__ , __leaf__)); # 109 "/usr/include/malloc.h" 3 # 119 "/usr/include/malloc.h" 3 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__ , __leaf__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void malloc_stats (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_info (int __options, FILE *__fp) __attribute__ ((__nothrow__ , __leaf__)); extern void *malloc_get_state (void) __attribute__ ((__nothrow__ , __leaf__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void (*volatile __malloc_initialize_hook) (void) __attribute__ ((__deprecated__)); extern void (*volatile __free_hook) (void *__ptr, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __malloc_hook)(size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __realloc_hook)(void *__ptr, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void *(*volatile __memalign_hook)(size_t __alignment, size_t __size, const void *) __attribute__ ((__deprecated__)); extern void (*volatile __after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 28 "/usr/include/time.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 38 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 37 "/usr/include/bits/time.h" 3 # 58 "/usr/include/bits/time.h" 3 # 95 "/usr/include/bits/time.h" 3 # 42 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 217 "/usr/include/time.h" 3 # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 414 "/usr/include/time.h" 3 # 429 "/usr/include/time.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "Direct.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "Direct.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "Direct.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/endian.h" 2 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 27 "/usr/include/strings.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 29 "/usr/include/strings.h" 2 3 extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); # 72 "/usr/include/strings.h" 3 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 100 "/usr/include/strings.h" 3 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((const)); extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 124 "/usr/include/strings.h" 2 3 extern int strcasecmp_l (const char *__s1, const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (const char *__s1, const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 23 "/usr/include/sched.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sched.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 29 "/usr/include/sched.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 typedef __time_t time_t; # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 33 "/usr/include/sched.h" 2 3 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 # 37 "/usr/include/bits/sched.h" 3 # 70 "/usr/include/bits/sched.h" 3 struct sched_param { int __sched_priority; }; # 93 "/usr/include/bits/sched.h" 3 struct __sched_param { int __sched_priority; }; typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[4096 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 165 "/usr/include/bits/sched.h" 3 # 184 "/usr/include/bits/sched.h" 3 # 195 "/usr/include/bits/sched.h" 3 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 42 "/usr/include/sched.h" 2 3 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 123 "/usr/include/sched.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "cxxabi.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "cxxabi.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "cxxabi.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/sys/sysinfo.h" 2 3 # 1 "/usr/include/linux/kernel.h" 1 3 # 1 "/usr/include/linux/sysinfo.h" 1 3 # 1 "/usr/include/linux/types.h" 1 3 # 1 "/usr/include/asm/types.h" 1 3 # 1 "/usr/include/asm-generic/types.h" 1 3 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 # 1 "/usr/include/asm/bitsperlong.h" 1 3 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 # 11 "/usr/include/asm/bitsperlong.h" 2 3 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 # 5 "/usr/include/asm/types.h" 2 3 # 5 "/usr/include/linux/types.h" 2 3 # 1 "/usr/include/linux/posix_types.h" 1 3 # 1 "/usr/include/linux/stddef.h" 1 3 # 5 "/usr/include/linux/posix_types.h" 2 3 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/asm/posix_types.h" 1 3 # 1 "/usr/include/asm/posix_types_64.h" 1 3 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/asm/posix_types_64.h" 2 3 # 7 "/usr/include/asm/posix_types.h" 2 3 # 36 "/usr/include/linux/posix_types.h" 2 3 # 9 "/usr/include/linux/types.h" 2 3 # 26 "/usr/include/linux/types.h" 3 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 # 25 "/usr/include/sys/sysinfo.h" 2 3 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/sys/wait.h" 2 3 # 1 "/usr/include/signal.h" 1 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 66 "/usr/include/bits/sigset.h" 3 # 98 "/usr/include/bits/sigset.h" 3 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 115 "/usr/include/bits/sigset.h" 3 extern __inline __attribute__ ((__gnu_inline__)) int __sigismember (const __sigset_t *__set, int __sig) { unsigned long int __mask = (((unsigned long int) 1) << (((__sig) - 1) % (8 * sizeof (unsigned long int)))); unsigned long int __word = (((__sig) - 1) / (8 * sizeof (unsigned long int))); return (__set->__val[__word] & __mask) ? 1 : 0; } extern __inline __attribute__ ((__gnu_inline__)) int __sigaddset ( __sigset_t *__set, int __sig) { unsigned long int __mask = (((unsigned long int) 1) << (((__sig) - 1) % (8 * sizeof (unsigned long int)))); unsigned long int __word = (((__sig) - 1) / (8 * sizeof (unsigned long int))); return ((__set->__val[__word] |= __mask), 0); } extern __inline __attribute__ ((__gnu_inline__)) int __sigdelset ( __sigset_t *__set, int __sig) { unsigned long int __mask = (((unsigned long int) 1) << (((__sig) - 1) % (8 * sizeof (unsigned long int)))); unsigned long int __word = (((__sig) - 1) / (8 * sizeof (unsigned long int))); return ((__set->__val[__word] &= ~__mask), 0); } # 33 "/usr/include/signal.h" 2 3 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/signal.h" 2 3 # 1 "/usr/include/bits/signum.h" 1 3 # 67 "/usr/include/bits/signum.h" 3 # 58 "/usr/include/signal.h" 2 3 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 76 "/usr/include/signal.h" 2 3 # 1 "/usr/include/bits/siginfo.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 25 "/usr/include/bits/siginfo.h" 2 3 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 49 "/usr/include/bits/siginfo.h" 3 # 58 "/usr/include/bits/siginfo.h" 3 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; short int si_addr_lsb; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 149 "/usr/include/bits/siginfo.h" 3 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR, BUS_MCEERR_AR, BUS_MCEERR_AO }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 300 "/usr/include/bits/siginfo.h" 3 typedef union pthread_attr_t pthread_attr_t; typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 # 122 "/usr/include/signal.h" 3 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); extern int __sigpause (int __sig_or_mask, int __is_sig); # 177 "/usr/include/signal.h" 3 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 242 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/sigaction.h" 1 3 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 68 "/usr/include/bits/sigaction.h" 3 # 246 "/usr/include/signal.h" 2 3 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; extern int sigvec (int __sig, const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/bits/sigcontext.h" 1 3 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 120 "/usr/include/bits/sigcontext.h" 3 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 333 "/usr/include/signal.h" 2 3 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 343 "/usr/include/signal.h" 2 3 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/bits/sigstack.h" 1 3 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 350 "/usr/include/signal.h" 2 3 # 1 "/usr/include/sys/ucontext.h" 1 3 # 1 "/usr/include/signal.h" 1 3 # 23 "/usr/include/sys/ucontext.h" 2 3 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 91 "/usr/include/sys/ucontext.h" 3 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 245 "/usr/include/sys/ucontext.h" 3 # 353 "/usr/include/signal.h" 2 3 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 383 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 388 "/usr/include/signal.h" 2 3 # 1 "/usr/include/bits/sigthread.h" 1 3 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 389 "/usr/include/signal.h" 2 3 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 30 "/usr/include/sys/wait.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 36 "/usr/include/sys/wait.h" 2 3 # 49 "/usr/include/sys/wait.h" 3 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 75 "/usr/include/sys/wait.h" 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 65 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 83 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 96 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 78 "/usr/include/sys/wait.h" 2 3 # 89 "/usr/include/sys/wait.h" 3 # 96 "/usr/include/sys/wait.h" 3 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; extern __pid_t wait (__WAIT_STATUS __stat_loc); extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); typedef __id_t id_t; # 1 "/usr/include/bits/siginfo.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 25 "/usr/include/bits/siginfo.h" 2 3 # 38 "/usr/include/bits/siginfo.h" 3 # 287 "/usr/include/bits/siginfo.h" 3 # 147 "/usr/include/sys/wait.h" 2 3 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 25 "/usr/include/stdlib.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 33 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 42 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 65 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 83 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 96 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 43 "/usr/include/stdlib.h" 2 3 # 56 "/usr/include/stdlib.h" 3 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 82 "/usr/include/stdlib.h" 3 # 94 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__ , __leaf__)) ; extern double atof (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (const char *__nptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern float strtof (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long double strtold (const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int strtol (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern unsigned long int strtoul (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtouq (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern long long int strtoll (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); __extension__ extern unsigned long long int strtoull (const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 273 "/usr/include/stdlib.h" 3 extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) atoi (const char *__nptr) { return (int) strtol (__nptr, (char **) ((void*)0), 10); } extern __inline __attribute__ ((__gnu_inline__)) long int __attribute__ ((__nothrow__ , __leaf__)) atol (const char *__nptr) { return strtol (__nptr, (char **) ((void*)0), 10); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) long long int __attribute__ ((__nothrow__ , __leaf__)) atoll (const char *__nptr) { return strtoll (__nptr, (char **) ((void*)0), 10); } extern char *l64a (long int __n) __attribute__ ((__nothrow__ , __leaf__)) ; extern long int a64l (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 315 "/usr/include/stdlib.h" 2 3 extern long int random (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__ , __leaf__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__ , __leaf__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__ , __leaf__)); extern double drand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; __extension__ unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/alloca.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 25 "/usr/include/alloca.h" 2 3 extern void *alloca (size_t __size) __attribute__ ((__nothrow__ , __leaf__)); # 493 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 530 "/usr/include/stdlib.h" 3 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); # 551 "/usr/include/stdlib.h" 3 extern void _Exit (int __status) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__noreturn__)); extern char *getenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 573 "/usr/include/stdlib.h" 3 extern int putenv (char *__string) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int setenv (const char *__name, const char *__value, int __replace) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *mktemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 633 "/usr/include/stdlib.h" 3 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 656 "/usr/include/stdlib.h" 3 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 710 "/usr/include/stdlib.h" 3 extern int system (const char *__command) ; # 727 "/usr/include/stdlib.h" 3 extern char *realpath (const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__ , __leaf__)) ; typedef int (*__compar_fn_t) (const void *, const void *); # 751 "/usr/include/stdlib.h" 3 extern void *bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; # 1 "/usr/include/bits/stdlib-bsearch.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) void * bsearch (const void *__key, const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) { size_t __l, __u, __idx; const void *__p; int __comparison; __l = 0; __u = __nmemb; while (__l < __u) { __idx = (__l + __u) / 2; __p = (void *) (((const char *) __base) + (__idx * __size)); __comparison = (*__compar) (__key, __p); if (__comparison < 0) __u = __idx; else if (__comparison > 0) __l = __idx + 1; else return (void *) __p; } return ((void*)0); } # 761 "/usr/include/stdlib.h" 2 3 extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (const char *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int mbtowc (wchar_t *__restrict __pwc, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__ , __leaf__)); extern size_t mbstowcs (wchar_t *__restrict __pwcs, const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern size_t wcstombs (char *__restrict __s, const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__ , __leaf__)); extern int rpmatch (const char *__response) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 935 "/usr/include/stdlib.h" 3 # 946 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/bits/stdlib-float.h" 1 3 extern __inline __attribute__ ((__gnu_inline__)) double __attribute__ ((__nothrow__ , __leaf__)) atof (const char *__nptr) { return strtod (__nptr, (char **) ((void*)0)); } # 956 "/usr/include/stdlib.h" 2 3 # 964 "/usr/include/stdlib.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 23 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/sched.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 29 "/usr/include/sched.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 typedef __time_t time_t; # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 33 "/usr/include/sched.h" 2 3 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 # 37 "/usr/include/bits/sched.h" 3 # 70 "/usr/include/bits/sched.h" 3 struct sched_param { int __sched_priority; }; # 93 "/usr/include/bits/sched.h" 3 struct __sched_param { int __sched_priority; }; typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[4096 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 165 "/usr/include/bits/sched.h" 3 # 184 "/usr/include/bits/sched.h" 3 # 195 "/usr/include/bits/sched.h" 3 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 42 "/usr/include/sched.h" 2 3 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 123 "/usr/include/sched.h" 3 # 24 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 38 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 37 "/usr/include/bits/time.h" 3 # 58 "/usr/include/bits/time.h" 3 # 95 "/usr/include/bits/time.h" 3 # 42 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 83 "/usr/include/time.h" 3 typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 178 "/usr/include/time.h" 3 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 217 "/usr/include/time.h" 3 # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 414 "/usr/include/time.h" 3 # 429 "/usr/include/time.h" 3 # 25 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 27 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/setjmp.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 27 "/usr/include/bits/setjmp.h" 2 3 typedef long int __jmp_buf[8]; # 28 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/pthread.h" 2 3 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 93 "/usr/include/pthread.h" 3 # 121 "/usr/include/pthread.h" 3 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 163 "/usr/include/pthread.h" 3 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; extern int pthread_create (pthread_t *__restrict __newthread, const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 277 "/usr/include/pthread.h" 3 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 434 "/usr/include/pthread.h" 3 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 465 "/usr/include/pthread.h" 3 # 474 "/usr/include/pthread.h" 3 # 494 "/usr/include/pthread.h" 3 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 668 "/usr/include/pthread.h" 3 # 691 "/usr/include/pthread.h" 3 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 703 "/usr/include/pthread.h" 3 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 742 "/usr/include/pthread.h" 3 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 892 "/usr/include/pthread.h" 3 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) pthread_equal (pthread_t __thread1, pthread_t __thread2) { return __thread1 == __thread2; } # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/setjmp.h" 2 3 # 1 "/usr/include/bits/setjmp.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 27 "/usr/include/bits/setjmp.h" 2 3 typedef long int __jmp_buf[8]; # 30 "/usr/include/setjmp.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 31 "/usr/include/setjmp.h" 2 3 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/sys/utsname.h" 2 3 # 1 "/usr/include/bits/utsname.h" 1 3 # 30 "/usr/include/sys/utsname.h" 2 3 # 46 "/usr/include/sys/utsname.h" 3 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; extern int uname (struct utsname *__name) __attribute__ ((__nothrow__ , __leaf__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 1 3 # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include-fixed/limits.h" 1 3 # 166 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include-fixed/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/limits.h" 2 3 # 113 "/usr/include/limits.h" 3 # 140 "/usr/include/limits.h" 3 # 1 "/usr/include/bits/posix1_lim.h" 1 3 # 154 "/usr/include/bits/posix1_lim.h" 3 # 1 "/usr/include/bits/local_lim.h" 1 3 # 36 "/usr/include/bits/local_lim.h" 3 # 1 "/usr/include/linux/limits.h" 1 3 # 17 "/usr/include/linux/limits.h" 3 # 39 "/usr/include/bits/local_lim.h" 2 3 # 161 "/usr/include/bits/posix1_lim.h" 2 3 # 144 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 86 "/usr/include/bits/posix2_lim.h" 3 # 148 "/usr/include/limits.h" 2 3 # 169 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include-fixed/limits.h" 2 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 2 3 # 79 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 3 # 109 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 3 # 133 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/fcntl.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 32 "/usr/include/fcntl.h" 2 3 # 1 "/usr/include/bits/fcntl.h" 1 3 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 59 "/usr/include/bits/fcntl.h" 3 # 1 "/usr/include/bits/fcntl-linux.h" 1 3 # 77 "/usr/include/bits/fcntl-linux.h" 3 # 102 "/usr/include/bits/fcntl-linux.h" 3 # 119 "/usr/include/bits/fcntl-linux.h" 3 # 136 "/usr/include/bits/fcntl-linux.h" 3 # 148 "/usr/include/bits/fcntl-linux.h" 3 # 174 "/usr/include/bits/fcntl-linux.h" 3 # 181 "/usr/include/bits/fcntl-linux.h" 3 # 193 "/usr/include/bits/fcntl-linux.h" 3 # 219 "/usr/include/bits/fcntl-linux.h" 3 # 226 "/usr/include/bits/fcntl-linux.h" 3 # 237 "/usr/include/bits/fcntl-linux.h" 3 # 256 "/usr/include/bits/fcntl-linux.h" 3 # 266 "/usr/include/bits/fcntl-linux.h" 3 # 280 "/usr/include/bits/fcntl-linux.h" 3 # 322 "/usr/include/bits/fcntl-linux.h" 3 # 396 "/usr/include/bits/fcntl-linux.h" 3 # 62 "/usr/include/bits/fcntl.h" 2 3 # 36 "/usr/include/fcntl.h" 2 3 typedef __mode_t mode_t; typedef __off_t off_t; typedef __pid_t pid_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 68 "/usr/include/fcntl.h" 2 3 # 1 "/usr/include/bits/stat.h" 1 3 # 39 "/usr/include/bits/stat.h" 3 struct stat { __dev_t st_dev; __ino_t st_ino; # 61 "/usr/include/bits/stat.h" 3 __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 __syscall_slong_t __glibc_reserved[3]; # 115 "/usr/include/bits/stat.h" 3 }; # 170 "/usr/include/bits/stat.h" 3 # 189 "/usr/include/bits/stat.h" 3 # 204 "/usr/include/bits/stat.h" 3 # 69 "/usr/include/fcntl.h" 2 3 # 84 "/usr/include/fcntl.h" 3 # 124 "/usr/include/fcntl.h" 3 # 154 "/usr/include/fcntl.h" 3 extern int fcntl (int __fd, int __cmd, ...); extern int open (const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 181 "/usr/include/fcntl.h" 3 extern int openat (int __fd, const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 208 "/usr/include/fcntl.h" 3 extern int creat (const char *__file, mode_t __mode) __attribute__ ((__nonnull__ (1))); # 227 "/usr/include/fcntl.h" 3 extern int lockf (int __fd, int __cmd, off_t __len); # 256 "/usr/include/fcntl.h" 3 extern int posix_fadvise (int __fd, off_t __offset, off_t __len, int __advise) __attribute__ ((__nothrow__ , __leaf__)); # 276 "/usr/include/fcntl.h" 3 extern int posix_fallocate (int __fd, off_t __offset, off_t __len); # 297 "/usr/include/fcntl.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/string.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 33 "/usr/include/string.h" 2 3 extern void *memcpy (void *__restrict __dest, const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, const void *__src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 92 "/usr/include/string.h" 3 extern void *memchr (const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 121 "/usr/include/string.h" 3 extern char *strcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 160 "/usr/include/string.h" 2 3 extern int strcoll_l (const char *__s1, const char *__s2, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (const char *__string, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 206 "/usr/include/string.h" 3 # 232 "/usr/include/string.h" 3 extern char *strchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 259 "/usr/include/string.h" 3 extern char *strrchr (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 277 "/usr/include/string.h" 3 extern size_t strcspn (const char *__s, const char *__reject) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 311 "/usr/include/string.h" 3 extern char *strpbrk (const char *__s, const char *__accept) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 338 "/usr/include/string.h" 3 extern char *strstr (const char *__haystack, const char *__needle) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); # 373 "/usr/include/string.h" 3 # 391 "/usr/include/string.h" 3 extern size_t strlen (const char *__s) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (const char *__string, size_t __maxlen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__ , __leaf__)); extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 438 "/usr/include/string.h" 3 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__ , __leaf__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (const void *__s1, const void *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 485 "/usr/include/string.h" 3 extern char *index (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 513 "/usr/include/string.h" 3 extern char *rindex (const char *__s, int __c) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int strcasecmp (const char *__s1, const char *__s2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (const char *__s1, const char *__s2, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 549 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, const char *__restrict __delim) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern char *__stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, const char *__restrict __src) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 604 "/usr/include/string.h" 3 # 1 "/usr/include/bits/string.h" 1 3 # 629 "/usr/include/string.h" 2 3 # 1 "/usr/include/bits/string2.h" 1 3 # 632 "/usr/include/string.h" 2 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/sys/times.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 56 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 29 "/usr/include/sys/times.h" 2 3 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__ , __leaf__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^: ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 1 3 # 74 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 3 # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include/stdint.h" 1 3 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 40 "/usr/include/bits/wchar.h" 3 # 48 "/usr/include/bits/wchar.h" 3 # 27 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 101 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 114 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 130 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 142 "/usr/include/stdint.h" 3 # 151 "/usr/include/stdint.h" 3 # 200 "/usr/include/stdint.h" 3 # 210 "/usr/include/stdint.h" 3 # 221 "/usr/include/stdint.h" 3 # 233 "/usr/include/stdint.h" 3 # 254 "/usr/include/stdint.h" 3 # 286 "/usr/include/stdint.h" 3 # 296 "/usr/include/stdint.h" 3 # 305 "/usr/include/stdint.h" 3 # 10 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include/stdint.h" 2 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 2 3 # 85 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/pwd.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/pwd.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 33 "/usr/include/pwd.h" 2 3 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 # 39 "/usr/include/stdio.h" 3 struct _IO_FILE; typedef struct _IO_FILE FILE; # 69 "/usr/include/stdio.h" 3 # 946 "/usr/include/stdio.h" 3 # 64 "/usr/include/pwd.h" 2 3 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (const char *__name); extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 182 "/usr/include/pwd.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 1 3 # 48 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 extern int __libm_flt_rounds (void) ; # 84 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 96 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 110 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 121 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 131 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 142 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 150 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 186 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 201 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 273 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 347 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/float.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 24 "/usr/include/sys/param.h" 2 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 217 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 26 "/usr/include/sys/param.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 1 3 # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include-fixed/limits.h" 1 3 # 166 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include-fixed/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 113 "/usr/include/limits.h" 3 # 140 "/usr/include/limits.h" 3 # 1 "/usr/include/bits/posix1_lim.h" 1 3 # 154 "/usr/include/bits/posix1_lim.h" 3 # 1 "/usr/include/bits/local_lim.h" 1 3 # 36 "/usr/include/bits/local_lim.h" 3 # 1 "/usr/include/linux/limits.h" 1 3 # 17 "/usr/include/linux/limits.h" 3 # 39 "/usr/include/bits/local_lim.h" 2 3 # 161 "/usr/include/bits/posix1_lim.h" 2 3 # 144 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 86 "/usr/include/bits/posix2_lim.h" 3 # 148 "/usr/include/limits.h" 2 3 # 169 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include-fixed/limits.h" 2 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 2 3 # 79 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 3 # 109 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 3 # 133 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/limits.h" 3 # 27 "/usr/include/sys/param.h" 2 3 # 1 "/usr/include/signal.h" 1 3 # 1 "/usr/include/bits/sigset.h" 1 3 # 33 "/usr/include/bits/sigset.h" 3 # 66 "/usr/include/bits/sigset.h" 3 # 98 "/usr/include/bits/sigset.h" 3 extern int __sigismember (const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 115 "/usr/include/bits/sigset.h" 3 extern __inline __attribute__ ((__gnu_inline__)) int __sigismember (const __sigset_t *__set, int __sig) { unsigned long int __mask = (((unsigned long int) 1) << (((__sig) - 1) % (8 * sizeof (unsigned long int)))); unsigned long int __word = (((__sig) - 1) / (8 * sizeof (unsigned long int))); return (__set->__val[__word] & __mask) ? 1 : 0; } extern __inline __attribute__ ((__gnu_inline__)) int __sigaddset ( __sigset_t *__set, int __sig) { unsigned long int __mask = (((unsigned long int) 1) << (((__sig) - 1) % (8 * sizeof (unsigned long int)))); unsigned long int __word = (((__sig) - 1) / (8 * sizeof (unsigned long int))); return ((__set->__val[__word] |= __mask), 0); } extern __inline __attribute__ ((__gnu_inline__)) int __sigdelset ( __sigset_t *__set, int __sig) { unsigned long int __mask = (((unsigned long int) 1) << (((__sig) - 1) % (8 * sizeof (unsigned long int)))); unsigned long int __word = (((__sig) - 1) / (8 * sizeof (unsigned long int))); return ((__set->__val[__word] &= ~__mask), 0); } # 33 "/usr/include/signal.h" 2 3 typedef __sig_atomic_t sig_atomic_t; # 53 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/signum.h" 1 3 # 67 "/usr/include/bits/signum.h" 3 # 58 "/usr/include/signal.h" 2 3 # 71 "/usr/include/signal.h" 3 # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 76 "/usr/include/signal.h" 2 3 # 1 "/usr/include/bits/siginfo.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 25 "/usr/include/bits/siginfo.h" 2 3 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 49 "/usr/include/bits/siginfo.h" 3 # 58 "/usr/include/bits/siginfo.h" 3 typedef __clock_t __sigchld_clock_t; typedef struct { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __sigchld_clock_t si_utime; __sigchld_clock_t si_stime; } _sigchld; struct { void *si_addr; short int si_addr_lsb; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; struct { void *_call_addr; int _syscall; unsigned int _arch; } _sigsys; } _sifields; } siginfo_t ; # 149 "/usr/include/bits/siginfo.h" 3 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR, BUS_MCEERR_AR, BUS_MCEERR_AO }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 300 "/usr/include/bits/siginfo.h" 3 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); pthread_attr_t *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 81 "/usr/include/signal.h" 2 3 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); # 114 "/usr/include/signal.h" 3 # 122 "/usr/include/signal.h" 3 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern int raise (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__ , __leaf__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__ , __leaf__)); extern void psignal (int __sig, const char *__s); extern void psiginfo (const siginfo_t *__pinfo, const char *__s); extern int __sigpause (int __sig_or_mask, int __is_sig); # 177 "/usr/include/signal.h" 3 extern int sigblock (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (const sigset_t *__set, int __signo) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 242 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/sigaction.h" 1 3 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 68 "/usr/include/bits/sigaction.h" 3 # 246 "/usr/include/signal.h" 2 3 extern int sigprocmask (int __how, const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__ , __leaf__)); extern int sigsuspend (const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__ , __leaf__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (const sigset_t *__restrict __set, siginfo_t *__restrict __info, const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, const union sigval __val) __attribute__ ((__nothrow__ , __leaf__)); extern const char *const _sys_siglist[65]; extern const char *const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; extern int sigvec (int __sig, const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/bits/sigcontext.h" 1 3 struct _fpx_sw_bytes { __uint32_t magic1; __uint32_t extended_size; __uint64_t xstate_bv; __uint32_t xstate_size; __uint32_t padding[7]; }; struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 120 "/usr/include/bits/sigcontext.h" 3 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { __uint64_t r8; __uint64_t r9; __uint64_t r10; __uint64_t r11; __uint64_t r12; __uint64_t r13; __uint64_t r14; __uint64_t r15; __uint64_t rdi; __uint64_t rsi; __uint64_t rbp; __uint64_t rbx; __uint64_t rdx; __uint64_t rax; __uint64_t rcx; __uint64_t rsp; __uint64_t rip; __uint64_t eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; __uint64_t err; __uint64_t trapno; __uint64_t oldmask; __uint64_t cr2; __extension__ union { struct _fpstate * fpstate; __uint64_t __fpstate_word; }; __uint64_t __reserved1 [8]; }; struct _xsave_hdr { __uint64_t xstate_bv; __uint64_t reserved1[2]; __uint64_t reserved2[5]; }; struct _ymmh_state { __uint32_t ymmh_space[64]; }; struct _xstate { struct _fpstate fpstate; struct _xsave_hdr xstate_hdr; struct _ymmh_state ymmh; }; # 333 "/usr/include/signal.h" 2 3 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 343 "/usr/include/signal.h" 2 3 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__ , __leaf__)); # 1 "/usr/include/bits/sigstack.h" 1 3 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 350 "/usr/include/signal.h" 2 3 # 1 "/usr/include/sys/ucontext.h" 1 3 # 1 "/usr/include/signal.h" 1 3 # 23 "/usr/include/sys/ucontext.h" 2 3 __extension__ typedef long long int greg_t; typedef greg_t gregset_t[23]; # 91 "/usr/include/sys/ucontext.h" 3 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; __extension__ unsigned long long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 245 "/usr/include/sys/ucontext.h" 3 # 353 "/usr/include/signal.h" 2 3 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__deprecated__)); extern int sigaltstack (const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__ , __leaf__)); # 383 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/sigthread.h" 1 3 extern int pthread_sigmask (int __how, const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__ , __leaf__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__ , __leaf__)); # 389 "/usr/include/signal.h" 2 3 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__ , __leaf__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__ , __leaf__)); # 29 "/usr/include/sys/param.h" 2 3 # 1 "/usr/include/bits/param.h" 1 3 # 1 "/usr/include/linux/param.h" 1 3 # 1 "/usr/include/asm/param.h" 1 3 # 1 "/usr/include/asm-generic/param.h" 1 3 # 2 "/usr/include/asm/param.h" 2 3 # 5 "/usr/include/linux/param.h" 2 3 # 29 "/usr/include/bits/param.h" 2 3 # 32 "/usr/include/sys/param.h" 2 3 # 62 "/usr/include/sys/param.h" 3 # 71 "/usr/include/sys/param.h" 3 # 97 "/usr/include/sys/param.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/netdb.h" 2 3 # 1 "/usr/include/netinet/in.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 1 3 # 74 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 3 # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include/stdint.h" 1 3 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 40 "/usr/include/bits/wchar.h" 3 # 48 "/usr/include/bits/wchar.h" 3 # 27 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 101 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 114 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 130 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 142 "/usr/include/stdint.h" 3 # 151 "/usr/include/stdint.h" 3 # 200 "/usr/include/stdint.h" 3 # 210 "/usr/include/stdint.h" 3 # 221 "/usr/include/stdint.h" 3 # 233 "/usr/include/stdint.h" 3 # 254 "/usr/include/stdint.h" 3 # 286 "/usr/include/stdint.h" 3 # 296 "/usr/include/stdint.h" 3 # 305 "/usr/include/stdint.h" 3 # 10 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include/stdint.h" 2 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 2 3 # 85 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 3 # 23 "/usr/include/netinet/in.h" 2 3 # 1 "/usr/include/sys/socket.h" 1 3 # 1 "/usr/include/sys/uio.h" 1 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 # 199 "/usr/include/sys/types.h" 3 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 217 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 24 "/usr/include/sys/uio.h" 2 3 # 1 "/usr/include/bits/uio.h" 1 3 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/sys/uio.h" 2 3 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 92 "/usr/include/sys/uio.h" 3 # 119 "/usr/include/sys/uio.h" 3 # 27 "/usr/include/sys/socket.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 29 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/bits/socket.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 28 "/usr/include/bits/socket.h" 2 3 typedef __socklen_t socklen_t; # 1 "/usr/include/bits/socket_type.h" 1 3 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/bits/socket.h" 2 3 # 84 "/usr/include/bits/socket.h" 3 # 129 "/usr/include/bits/socket.h" 3 # 141 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/bits/sockaddr.h" 1 3 typedef unsigned short int sa_family_t; # 147 "/usr/include/bits/socket.h" 2 3 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, # 184 "/usr/include/bits/socket.h" 3 MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 271 "/usr/include/bits/socket.h" 3 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); extern __inline __attribute__ ((__gnu_inline__)) struct cmsghdr * __attribute__ ((__nothrow__ , __leaf__)) __cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) { if ((size_t) __cmsg->cmsg_len < sizeof (struct cmsghdr)) return (struct cmsghdr *) 0; __cmsg = (struct cmsghdr *) ((unsigned char *) __cmsg + (((__cmsg->cmsg_len) + sizeof (size_t) - 1) & (size_t) ~(sizeof (size_t) - 1))); if ((unsigned char *) (__cmsg + 1) > ((unsigned char *) __mhdr->msg_control + __mhdr->msg_controllen) || ((unsigned char *) __cmsg + (((__cmsg->cmsg_len) + sizeof (size_t) - 1) & (size_t) ~(sizeof (size_t) - 1)) > ((unsigned char *) __mhdr->msg_control + __mhdr->msg_controllen))) return (struct cmsghdr *) 0; return __cmsg; } enum { SCM_RIGHTS = 0x01 }; # 318 "/usr/include/bits/socket.h" 3 # 343 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/asm/socket.h" 1 3 # 1 "/usr/include/asm-generic/socket.h" 1 3 # 1 "/usr/include/asm/sockios.h" 1 3 # 1 "/usr/include/asm-generic/sockios.h" 1 3 # 12 "/usr/include/asm-generic/sockios.h" 3 # 2 "/usr/include/asm/sockios.h" 2 3 # 5 "/usr/include/asm-generic/socket.h" 2 3 # 34 "/usr/include/asm-generic/socket.h" 3 # 2 "/usr/include/asm/socket.h" 2 3 # 346 "/usr/include/bits/socket.h" 2 3 # 377 "/usr/include/bits/socket.h" 3 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/sys/socket.h" 2 3 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 98 "/usr/include/sys/socket.h" 3 # 108 "/usr/include/sys/socket.h" 3 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 196 "/usr/include/sys/socket.h" 3 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 214 "/usr/include/sys/socket.h" 3 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 254 "/usr/include/sys/socket.h" 3 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 24 "/usr/include/netinet/in.h" 2 3 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/bits/in.h" 1 3 # 35 "/usr/include/bits/in.h" 3 # 67 "/usr/include/bits/in.h" 3 # 87 "/usr/include/bits/in.h" 3 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 146 "/usr/include/bits/in.h" 3 # 166 "/usr/include/bits/in.h" 3 # 178 "/usr/include/bits/in.h" 3 # 38 "/usr/include/netinet/in.h" 2 3 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135 }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 # 386 "/usr/include/netinet/in.h" 2 3 # 407 "/usr/include/netinet/in.h" 3 # 416 "/usr/include/netinet/in.h" 3 # 424 "/usr/include/netinet/in.h" 3 # 441 "/usr/include/netinet/in.h" 3 # 449 "/usr/include/netinet/in.h" 3 # 496 "/usr/include/netinet/in.h" 3 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 627 "/usr/include/netinet/in.h" 3 # 28 "/usr/include/netdb.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 1 3 # 74 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 3 # 85 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 3 # 29 "/usr/include/netdb.h" 2 3 # 1 "/usr/include/rpc/netdb.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 43 "/usr/include/rpc/netdb.h" 2 3 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__ , __leaf__)); extern void endrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbyname (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__ , __leaf__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbyname_r (const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__ , __leaf__)); # 33 "/usr/include/netdb.h" 2 3 # 41 "/usr/include/netdb.h" 3 # 1 "/usr/include/bits/netdb.h" 1 3 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 43 "/usr/include/netdb.h" 2 3 # 51 "/usr/include/netdb.h" 3 extern int *__h_errno_location (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 78 "/usr/include/netdb.h" 3 extern void herror (const char *__str) __attribute__ ((__nothrow__ , __leaf__)); extern const char *hstrerror (int __err_num) __attribute__ ((__nothrow__ , __leaf__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (const char *__name); extern struct hostent *gethostbyname2 (const char *__name, int __af); extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (const char *__name); extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (const char *__name, const char *__proto); extern struct servent *getservbyport (int __port, const char *__proto); extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (const char *__restrict __name, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (const char *__name); extern struct protoent *getprotobynumber (int __proto); extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int setnetgrent (const char *__netgroup); extern void endnetgrent (void); extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); extern int innetgr (const char *__netgroup, const char *__host, const char *__user, const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); extern int rcmd (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p); extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, const char *__restrict __locuser, const char *__restrict __remuser, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); extern int rexec (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p); extern int rexec_af (char **__restrict __ahost, int __rport, const char *__restrict __name, const char *__restrict __pass, const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); extern int ruserok (const char *__rhost, int __suser, const char *__remuser, const char *__locuser); extern int ruserok_af (const char *__rhost, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); extern int iruserok (uint32_t __raddr, int __suser, const char *__remuser, const char *__locuser); extern int iruserok_af (const void *__raddr, int __suser, const char *__remuser, const char *__locuser, sa_family_t __af); extern int rresvport (int *__alport); extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 596 "/usr/include/netdb.h" 3 # 616 "/usr/include/netdb.h" 3 # 638 "/usr/include/netdb.h" 3 # 656 "/usr/include/netdb.h" 3 extern int getaddrinfo (const char *__restrict __name, const char *__restrict __service, const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__ , __leaf__)); extern const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__ , __leaf__)); extern int getnameinfo (const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, int __flags); # 712 "/usr/include/netdb.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 23 "/usr/include/search.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 26 "/usr/include/search.h" 2 3 # 41 "/usr/include/search.h" 3 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__ , __leaf__)); extern void remque (void *__elem) __attribute__ ((__nothrow__ , __leaf__)); typedef int (*__compar_fn_t) (const void *, const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__ , __leaf__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__ , __leaf__)); extern void hdestroy (void) __attribute__ ((__nothrow__ , __leaf__)); # 111 "/usr/include/search.h" 3 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (const void *__key, void *const *__rootp, __compar_fn_t __compar); extern void *tdelete (const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (const void *__nodep, VISIT __value, int __level); extern void twalk (const void *__root, __action_fn_t __action); # 160 "/usr/include/search.h" 3 extern void *lfind (const void *__key, const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 1 3 # 43 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 1 3 # 1 "/usr/include/math.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 27 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_val.h" 1 3 # 33 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_valf.h" 1 3 # 35 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_vall.h" 1 3 # 36 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/inf.h" 1 3 # 39 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/nan.h" 1 3 # 42 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/mathdef.h" 1 3 typedef float float_t; typedef double double_t; # 40 "/usr/include/bits/mathdef.h" 3 # 46 "/usr/include/math.h" 2 3 # 64 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern double acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cos (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sin (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tan (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __tanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __acosh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __asinh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __atanh (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern double log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log10 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 124 "/usr/include/bits/mathcalls.h" 3 extern double expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log1p (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __logb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __log2 (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __significand (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nan (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __j1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __jn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y0 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __y1 (double) __attribute__ ((__nothrow__ , __leaf__)); extern double yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double __yn (int, double) __attribute__ ((__nothrow__ , __leaf__)); extern double erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erf (double) __attribute__ ((__nothrow__ , __leaf__)); extern double erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __erfc (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __tgamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double __gamma (double) __attribute__ ((__nothrow__ , __leaf__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern double rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __rint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lround (double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__ , __leaf__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__ , __leaf__)); extern double scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__ , __leaf__)); # 70 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern float acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cosf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __coshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern float logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log10f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 124 "/usr/include/bits/mathcalls.h" 3 extern float expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __logbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __log2f (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __significandf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nanf (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __j1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __jnf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y0f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __y1f (float) __attribute__ ((__nothrow__ , __leaf__)); extern float ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float __ynf (int, float) __attribute__ ((__nothrow__ , __leaf__)); extern float erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erff (float) __attribute__ ((__nothrow__ , __leaf__)); extern float erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __erfcf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __tgammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float __gammaf (float) __attribute__ ((__nothrow__ , __leaf__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern float rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __rintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__ , __leaf__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__ , __leaf__)); extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__ , __leaf__)); # 89 "/usr/include/math.h" 2 3 # 120 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern long double acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__ , __leaf__)); extern long double logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 124 "/usr/include/bits/mathcalls.h" 3 extern long double expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nanl (const char *__tagb) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __j1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y0l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __y1l (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double __gammal (long double) __attribute__ ((__nothrow__ , __leaf__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__ , __leaf__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__ , __leaf__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); __extension__ extern long long int llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__ , __leaf__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__ , __leaf__)); # 133 "/usr/include/math.h" 2 3 extern int signgam; enum { FP_NAN = 0, FP_INFINITE = 1, FP_ZERO = 2, FP_SUBNORMAL = 3, FP_NORMAL = 4 }; # 219 "/usr/include/math.h" 3 # 231 "/usr/include/math.h" 3 # 243 "/usr/include/math.h" 3 # 259 "/usr/include/math.h" 3 # 271 "/usr/include/math.h" 3 # 298 "/usr/include/math.h" 3 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 351 "/usr/include/math.h" 3 # 363 "/usr/include/math.h" 3 # 381 "/usr/include/math.h" 3 # 400 "/usr/include/math.h" 3 # 423 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathinline.h" 1 3 # 119 "/usr/include/bits/mathinline.h" 3 extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) __signbitf (float __x) { int __m; __asm ("pmovmskb %1, %0" : "=r" (__m) : "x" (__x)); return (__m & 0x8) != 0; } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) __signbit (double __x) { int __m; __asm ("pmovmskb %1, %0" : "=r" (__m) : "x" (__x)); return (__m & 0x80) != 0; } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) __signbitl (long double __x) { __extension__ union { long double __l; int __i[3]; } __u = { __l: __x }; return (__u.__i[2] & 0x8000) != 0; } # 386 "/usr/include/bits/mathinline.h" 3 # 427 "/usr/include/math.h" 2 3 # 445 "/usr/include/math.h" 3 # 453 "/usr/include/math.h" 3 # 461 "/usr/include/math.h" 3 # 469 "/usr/include/math.h" 3 # 477 "/usr/include/math.h" 3 # 485 "/usr/include/math.h" 3 # 20 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/math.h" 2 3 # 47 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 1 3 # 1 "/usr/include/complex.h" 1 3 # 1 "/usr/include/bits/mathdef.h" 1 3 # 29 "/usr/include/complex.h" 2 3 # 57 "/usr/include/complex.h" 3 # 70 "/usr/include/complex.h" 3 # 1 "/usr/include/bits/cmathcalls.h" 1 3 extern double _Complex cacos (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __cacos (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex casin (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __casin (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex catan (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __catan (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex ccos (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __ccos (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex csin (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __csin (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex ctan (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __ctan (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex cacosh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __cacosh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex casinh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __casinh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex catanh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __catanh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex ccosh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __ccosh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex csinh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __csinh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex ctanh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __ctanh (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex cexp (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __cexp (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex clog (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __clog (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex cpow (double _Complex __x, double _Complex __y) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __cpow (double _Complex __x, double _Complex __y) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex csqrt (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __csqrt (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double cabs (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __cabs (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double carg (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __carg (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex conj (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __conj (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex cproj (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double _Complex __cproj (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double cimag (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __cimag (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double creal (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern double __creal (double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); # 74 "/usr/include/complex.h" 2 3 # 1 "/usr/include/bits/cmathcalls.h" 1 3 extern float _Complex cacosf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __cacosf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex casinf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __casinf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex catanf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __catanf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex ccosf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __ccosf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex csinf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __csinf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex ctanf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __ctanf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex cacoshf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __cacoshf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex casinhf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __casinhf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex catanhf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __catanhf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex ccoshf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __ccoshf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex csinhf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __csinhf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex ctanhf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __ctanhf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex cexpf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __cexpf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex clogf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __clogf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex cpowf (float _Complex __x, float _Complex __y) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __cpowf (float _Complex __x, float _Complex __y) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex csqrtf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __csqrtf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float cabsf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __cabsf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float cargf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __cargf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex conjf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __conjf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex cprojf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float _Complex __cprojf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float cimagf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __cimagf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float crealf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern float __crealf (float _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); # 84 "/usr/include/complex.h" 2 3 # 96 "/usr/include/complex.h" 3 # 1 "/usr/include/bits/cmathcalls.h" 1 3 extern long double _Complex cacosl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __cacosl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex casinl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __casinl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex catanl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __catanl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex ccosl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __ccosl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex csinl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __csinl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex ctanl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __ctanl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex cacoshl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __cacoshl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex casinhl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __casinhl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex catanhl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __catanhl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex ccoshl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __ccoshl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex csinhl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __csinhl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex ctanhl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __ctanhl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex cexpl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __cexpl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex clogl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __clogl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex cpowl (long double _Complex __x, long double _Complex __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __cpowl (long double _Complex __x, long double _Complex __y) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex csqrtl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __csqrtl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double cabsl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cabsl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double cargl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cargl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex conjl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __conjl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex cprojl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double _Complex __cprojl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double cimagl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __cimagl (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double creall (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); extern long double __creall (long double _Complex __z) __attribute__ ((__nothrow__ , __leaf__)); # 103 "/usr/include/complex.h" 2 3 # 109 "/usr/include/complex.h" 3 # 23 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 2 3 # 59 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 73 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 90 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 101 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 128 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 extern double _Complex cis( double __x ); extern float _Complex cisf( float __x ); extern long double _Complex cisl( long double __x ); extern double _Complex cisd( double __x ); extern float _Complex cisdf( float __x ); extern long double _Complex cisdl( long double __x ); # 145 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 extern double _Complex cexp2( double _Complex __z ); extern float _Complex cexp2f( float _Complex __z ); extern long double _Complex cexp2l( long double _Complex __z ); extern double _Complex cexp10( double _Complex __z ); extern float _Complex cexp10f( float _Complex __z ); extern long double _Complex cexp10l( long double _Complex __z ); # 175 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 184 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 extern double _Complex clog2( double _Complex __z ); extern float _Complex clog2f( float _Complex __z ); extern long double _Complex clog2l( long double _Complex __z ); extern double _Complex clog10( double _Complex __z ); extern float _Complex clog10f( float _Complex __z ); extern long double _Complex clog10l( long double _Complex __z ); # 207 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 225 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 251 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 282 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 297 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/complex.h" 3 # 49 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 2 3 # 63 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 87 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 108 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 124 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 135 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 143 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 154 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 186 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 195 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 226 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 242 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern int fpclassifyf ( float __x ) ; extern int fpclassify ( double __x ) ; extern int fpclassifyd ( double __x ) ; extern int fpclassifyl ( long double __x ) ; extern int __fpclassifyf ( float __x ) ; extern int __fpclassify ( double __x ) ; extern int __fpclassifyd ( double __x ) ; extern int __fpclassifyl ( long double __x ) ; extern int isinff ( float __x ) ; extern int isinf ( double __x ) ; extern int isinfd ( double __x ) ; extern int isinfl ( long double __x ) ; extern int __isinff ( float __x ) ; extern int __isinf ( double __x ) ; extern int __isinfd ( double __x ) ; extern int __isinfl ( long double __x ) ; extern int isnanf ( float __x ) ; extern int isnan ( double __x ) ; extern int isnand ( double __x ) ; extern int isnanl ( long double __x ) ; extern int __isnanf ( float __x ) ; extern int __isnan ( double __x ) ; extern int __isnand ( double __x ) ; extern int __isnanl ( long double __x ) ; extern int isnormalf ( float __x ) ; extern int isnormal ( double __x ) ; extern int isnormald ( double __x ) ; extern int isnormall ( long double __x ) ; extern int __isnormalf ( float __x ) ; extern int __isnormal ( double __x ) ; extern int __isnormald ( double __x ) ; extern int __isnormall ( long double __x ) ; extern int isfinitef ( float __x ) ; extern int isfinite ( double __x ) ; extern int isfinited ( double __x ) ; extern int isfinitel ( long double __x ) ; extern int __isfinitef ( float __x ) ; extern int __isfinite ( double __x ) ; extern int __isfinited ( double __x ) ; extern int __isfinitel ( long double __x ) ; extern int finitef ( float __x ) ; extern int finite ( double __x ) ; extern int finited ( double __x ) ; extern int finitel ( long double __x ) ; extern int __finitef ( float __x ) ; extern int __finite ( double __x ) ; extern int __finited ( double __x ) ; extern int __finitel ( long double __x ) ; extern int signbitf ( float __x ) ; extern int signbit ( double __x ) ; extern int signbitd ( double __x ) ; extern int signbitl ( long double __x ) ; extern int __signbitf ( float __x ) ; extern int __signbit ( double __x ) ; extern int __signbitd ( double __x ) ; extern int __signbitl ( long double __x ) ; # 338 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 359 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 366 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern int isgreaterf( float __xf, float __yf ); extern int isgreater( double __xd, double __yd ); extern int isgreaterl( long double __xl, long double __yl ); extern int __isgreaterf( float __xf, float __yf ); extern int __isgreater( double __xd, double __yd ); extern int __isgreaterl( long double __xl, long double __yl ); extern int isgreaterequalf( float __xf, float __yf ); extern int isgreaterequal( double __xd, double __yd ); extern int isgreaterequall( long double __xl, long double __yl ); extern int __isgreaterequalf( float __xf, float __yf ); extern int __isgreaterequal( double __xd, double __yd ); extern int __isgreaterequall( long double __xl, long double __yl ); extern int islessf( float __xf, float __yf ); extern int isless( double __xd, double __yd ); extern int islessl( long double __xl, long double __yl ); extern int __islessf( float __xf, float __yf ); extern int __isless( double __xd, double __yd ); extern int __islessl( long double __xl, long double __yl ); extern int islessequalf( float __xf, float __yf ); extern int islessequal( double __xd, double __yd ); extern int islessequall( long double __xl, long double __yl ); extern int __islessequalf( float __xf, float __yf ); extern int __islessequal( double __xd, double __yd ); extern int __islessequall( long double __xl, long double __yl ); extern int islessgreaterf( float __xf, float __yf ); extern int islessgreater( double __xd, double __yd ); extern int islessgreaterl( long double __xl, long double __yl ); extern int __islessgreaterf( float __xf, float __yf ); extern int __islessgreater( double __xd, double __yd ); extern int __islessgreaterl( long double __xl, long double __yl ); extern int isunorderedf( float __xf, float __yf ); extern int isunordered( double __xd, double __yd ); extern int isunorderedl( long double __xl, long double __yl ); extern int __isunorderedf( float __xf, float __yf ); extern int __isunordered( double __xd, double __yd ); extern int __isunorderedl( long double __xl, long double __yl ); # 420 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 427 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 443 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 453 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern double cot( double __x ); extern float cotf( float __x ); extern long double cotl( long double __x ); extern double cosd( double __x ); extern float cosdf( float __x ); extern long double cosdl( long double __x ); extern double sind( double __x ); extern float sindf( float __x ); extern long double sindl( long double __x ); extern double tand( double __x ); extern float tandf( float __x ); extern long double tandl( long double __x ); extern double cotd( double __x ); extern float cotdf( float __x ); extern long double cotdl( long double __x ); extern double acosd( double __x ); extern float acosdf( float __x ); extern long double acosdl( long double __x ); extern double asind( double __x ); extern float asindf( float __x ); extern long double asindl( long double __x ); extern double atand( double __x ); extern float atandf( float __x ); extern long double atandl( long double __x ); extern double atand2( double __y, double __x ); extern float atand2f( float __y, float __x ); extern long double atand2l( long double __y, long double __x ); extern double atan2d( double __y, double __x ); extern float atan2df( float __y, float __x ); extern long double atan2dl( long double __y, long double __x ); extern void sincosd( double __x, double *__psin, double *__pcos ); extern void sincosdf( float __x, float *__psin, float *__pcos ); extern void sincosdl( long double __x, long double *__psin, long double *__pcos ); # 519 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern void sinhcosh( double __x, double *__psinh, double *__pcosh ); extern void sinhcoshf( float __x, float *__psinh, float *__pcosh ); extern void sinhcoshl( long double __x, long double *__psinh, long double *__pcosh ); # 533 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 560 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 574 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 615 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 638 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 657 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 667 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 675 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern double invsqrt( double __x ); extern float invsqrtf( float __x ); extern long double invsqrtl( long double __x ); # 694 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern double cdfnorm( double __x ); extern float cdfnormf( float __x ); extern double cdfnorminv( double __x ); extern float cdfnorminvf( float __x ); extern double erfinv( double __x ); extern float erfinvf( float __x ); extern long double erfinvl( long double __x ); extern double erfcinv( double __x ); extern float erfcinvf( float __x ); extern double gamma_r( double __x, int *__signgam ); extern float gammaf_r( float __x, int *__signgam ); extern long double gammal_r( long double __x, int *__signgam ); # 720 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 736 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 754 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 774 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 793 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 808 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 817 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 840 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern double annuity( double __x, double __y ); extern double compound( double __x, double __y ); extern float annuityf( float __x, float __y ); extern long double annuityl( long double __x, long double __y ); extern float compoundf( float __x, float __y ); extern long double compoundl( long double __x, long double __y ); # 860 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 878 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 889 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 948 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 958 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1077 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1094 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1121 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern double _Complex cis( double __x ); extern float _Complex cisf( float __x ); extern long double _Complex cisl( long double __x ); extern double _Complex cisd( double __x ); extern float _Complex cisdf( float __x ); extern long double _Complex cisdl( long double __x ); # 1138 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern double _Complex cexp2( double _Complex __z ); extern float _Complex cexp2f( float _Complex __z ); extern long double _Complex cexp2l( long double _Complex __z ); extern double _Complex cexp10( double _Complex __z ); extern float _Complex cexp10f( float _Complex __z ); extern long double _Complex cexp10l( long double _Complex __z ); # 1168 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1177 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 extern double _Complex clog2( double _Complex __z ); extern float _Complex clog2f( float _Complex __z ); extern long double _Complex clog2l( long double _Complex __z ); extern double _Complex clog10( double _Complex __z ); extern float _Complex clog10f( float _Complex __z ); extern long double _Complex clog10l( long double _Complex __z ); # 1200 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1218 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1244 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1275 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1291 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1379 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1394 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1607 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 1621 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/mathimf.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATHIMF_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 31 "/usr/include/sys/procfs.h" 2 3 # 1 "/usr/include/sys/time.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 typedef __time_t time_t; # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 26 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 28 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 37 "/usr/include/bits/time.h" 3 # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 30 "/usr/include/sys/time.h" 2 3 # 50 "/usr/include/sys/time.h" 3 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (const struct timeval *__tv, const struct timezone *__tz) __attribute__ ((__nothrow__ , __leaf__)); extern int adjtime (const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__ , __leaf__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int setitimer (__itimer_which_t __which, const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__ , __leaf__)); extern int utimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (const char *__file, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, const struct timeval __tvp[2]) __attribute__ ((__nothrow__ , __leaf__)); # 157 "/usr/include/sys/time.h" 3 # 188 "/usr/include/sys/time.h" 3 # 32 "/usr/include/sys/procfs.h" 2 3 # 1 "/usr/include/sys/types.h" 1 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; # 83 "/usr/include/time.h" 3 typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 217 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 33 "/usr/include/sys/procfs.h" 2 3 # 1 "/usr/include/sys/user.h" 1 3 struct user_fpregs_struct { unsigned short int cwd; unsigned short int swd; unsigned short int ftw; unsigned short int fop; __extension__ unsigned long long int rip; __extension__ unsigned long long int rdp; unsigned int mxcsr; unsigned int mxcr_mask; unsigned int st_space[32]; unsigned int xmm_space[64]; unsigned int padding[24]; }; struct user_regs_struct { __extension__ unsigned long long int r15; __extension__ unsigned long long int r14; __extension__ unsigned long long int r13; __extension__ unsigned long long int r12; __extension__ unsigned long long int rbp; __extension__ unsigned long long int rbx; __extension__ unsigned long long int r11; __extension__ unsigned long long int r10; __extension__ unsigned long long int r9; __extension__ unsigned long long int r8; __extension__ unsigned long long int rax; __extension__ unsigned long long int rcx; __extension__ unsigned long long int rdx; __extension__ unsigned long long int rsi; __extension__ unsigned long long int rdi; __extension__ unsigned long long int orig_rax; __extension__ unsigned long long int rip; __extension__ unsigned long long int cs; __extension__ unsigned long long int eflags; __extension__ unsigned long long int rsp; __extension__ unsigned long long int ss; __extension__ unsigned long long int fs_base; __extension__ unsigned long long int gs_base; __extension__ unsigned long long int ds; __extension__ unsigned long long int es; __extension__ unsigned long long int fs; __extension__ unsigned long long int gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; __extension__ unsigned long long int u_tsize; __extension__ unsigned long long int u_dsize; __extension__ unsigned long long int u_ssize; __extension__ unsigned long long int start_code; __extension__ unsigned long long int start_stack; __extension__ long long int signal; int reserved; __extension__ union { struct user_regs_struct* u_ar0; __extension__ unsigned long long int __u_ar0_word; }; __extension__ union { struct user_fpregs_struct* u_fpstate; __extension__ unsigned long long int __u_fpstate_word; }; __extension__ unsigned long long int magic; char u_comm [32]; __extension__ unsigned long long int u_debugreg [8]; }; # 171 "/usr/include/sys/user.h" 3 # 179 "/usr/include/sys/user.h" 3 # 34 "/usr/include/sys/procfs.h" 2 3 __extension__ typedef unsigned long long elf_greg_t; typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 60 "/usr/include/sys/procfs.h" 3 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/sys/resource.h" 2 3 # 1 "/usr/include/bits/resource.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 24 "/usr/include/bits/resource.h" 2 3 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_RTTIME = 15, __RLIMIT_NLIMITS = 16, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; typedef __rlim_t rlim_t; # 138 "/usr/include/bits/resource.h" 3 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 156 "/usr/include/bits/resource.h" 3 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 176 "/usr/include/bits/resource.h" 3 }; # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 180 "/usr/include/bits/resource.h" 2 3 struct rusage { struct timeval ru_utime; struct timeval ru_stime; __extension__ union { long int ru_maxrss; __syscall_slong_t __ru_maxrss_word; }; __extension__ union { long int ru_ixrss; __syscall_slong_t __ru_ixrss_word; }; __extension__ union { long int ru_idrss; __syscall_slong_t __ru_idrss_word; }; __extension__ union { long int ru_isrss; __syscall_slong_t __ru_isrss_word; }; __extension__ union { long int ru_minflt; __syscall_slong_t __ru_minflt_word; }; __extension__ union { long int ru_majflt; __syscall_slong_t __ru_majflt_word; }; __extension__ union { long int ru_nswap; __syscall_slong_t __ru_nswap_word; }; __extension__ union { long int ru_inblock; __syscall_slong_t __ru_inblock_word; }; __extension__ union { long int ru_oublock; __syscall_slong_t __ru_oublock_word; }; __extension__ union { long int ru_msgsnd; __syscall_slong_t __ru_msgsnd_word; }; __extension__ union { long int ru_msgrcv; __syscall_slong_t __ru_msgrcv_word; }; __extension__ union { long int ru_nsignals; __syscall_slong_t __ru_nsignals_word; }; __extension__ union { long int ru_nvcsw; __syscall_slong_t __ru_nvcsw_word; }; __extension__ union { long int ru_nivcsw; __syscall_slong_t __ru_nivcsw_word; }; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 327 "/usr/include/bits/resource.h" 3 # 25 "/usr/include/sys/resource.h" 2 3 typedef __id_t id_t; typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 64 "/usr/include/sys/resource.h" 3 extern int setrlimit (__rlimit_resource_t __resource, const struct rlimit *__rlimits) __attribute__ ((__nothrow__ , __leaf__)); # 84 "/usr/include/sys/resource.h" 3 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__ , __leaf__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__ , __leaf__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/unistd.h" 2 3 # 48 "/usr/include/unistd.h" 3 # 65 "/usr/include/unistd.h" 3 # 95 "/usr/include/unistd.h" 3 # 1 "/usr/include/bits/posix_opt.h" 1 3 # 203 "/usr/include/unistd.h" 2 3 # 1 "/usr/include/bits/environments.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/environments.h" 2 3 # 94 "/usr/include/bits/environments.h" 3 # 207 "/usr/include/unistd.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 218 "/usr/include/unistd.h" 2 3 typedef __ssize_t ssize_t; # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 227 "/usr/include/unistd.h" 2 3 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 253 "/usr/include/unistd.h" 3 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; extern int access (const char *__name, int __type) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 299 "/usr/include/unistd.h" 3 extern int faccessat (int __fd, const char *__file, int __type, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; # 319 "/usr/include/unistd.h" 3 extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__ , __leaf__)); # 348 "/usr/include/unistd.h" 3 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, const void *__buf, size_t __n) ; extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, const void *__buf, size_t __n, __off_t __offset) ; # 399 "/usr/include/unistd.h" 3 # 412 "/usr/include/unistd.h" 3 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__ , __leaf__)) ; extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__ , __leaf__)); extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__ , __leaf__)); extern int usleep (__useconds_t __useconds); extern int pause (void); extern int chown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) ; extern int lchown (const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__ , __leaf__)) ; # 519 "/usr/include/unistd.h" 3 extern char *getwd (char *__buf) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__ , __leaf__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__ , __leaf__)); extern char **__environ; extern int execve (const char *__path, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *const __argv[], char *const __envp[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int execv (const char *__path, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (const char *__path, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (const char *__file, char *const __argv[]) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (const char *__file, const char *__arg, ...) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); # 594 "/usr/include/unistd.h" 3 extern int nice (int __inc) __attribute__ ((__nothrow__ , __leaf__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/bits/confname.h" 1 3 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 610 "/usr/include/unistd.h" 2 3 extern long int pathconf (const char *__path, int __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__ , __leaf__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__ , __leaf__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__ , __leaf__)); extern int setpgrp (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t setsid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__ , __leaf__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__ , __leaf__)) ; extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__ , __leaf__)) ; # 751 "/usr/include/unistd.h" 3 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__ , __leaf__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int ttyslot (void) __attribute__ ((__nothrow__ , __leaf__)); extern int link (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, const char *__from, int __tofd, const char *__to, int __flags) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (const char *__from, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (const char *__from, int __tofd, const char *__to) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, const char *__name, int __flag) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__ , __leaf__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (const char *__name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/getopt.h" 1 3 # 46 "/usr/include/getopt.h" 3 extern char *optarg; extern int optind; extern int opterr; extern int optopt; # 120 "/usr/include/getopt.h" 3 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__ , __leaf__)); # 171 "/usr/include/getopt.h" 3 # 183 "/usr/include/getopt.h" 3 # 872 "/usr/include/unistd.h" 2 3 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__ , __leaf__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (const char *__name, size_t __len) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__ , __leaf__)); extern int revoke (const char *__file) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int acct (const char *__name) __attribute__ ((__nothrow__ , __leaf__)); extern char *getusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void endusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern void setusershell (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__ , __leaf__)) ; extern int chroot (const char *__path) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (const char *__prompt) __attribute__ ((__nonnull__ (1))); extern int fsync (int __fd); extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__ , __leaf__)); extern int getpagesize (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__ , __leaf__)); extern int truncate (const char *__file, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) ; # 1008 "/usr/include/unistd.h" 3 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__ , __leaf__)) ; # 1028 "/usr/include/unistd.h" 3 extern int brk (void *__addr) __attribute__ ((__nothrow__ , __leaf__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__ , __leaf__)); extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__ , __leaf__)); extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1094 "/usr/include/unistd.h" 3 # 1108 "/usr/include/unistd.h" 3 extern int fdatasync (int __fildes); # 1136 "/usr/include/unistd.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/netinet/in.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 1 3 # 74 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 3 # 1 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include/stdint.h" 1 3 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 40 "/usr/include/bits/wchar.h" 3 # 48 "/usr/include/bits/wchar.h" 3 # 27 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 101 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 114 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 130 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 142 "/usr/include/stdint.h" 3 # 151 "/usr/include/stdint.h" 3 # 200 "/usr/include/stdint.h" 3 # 210 "/usr/include/stdint.h" 3 # 221 "/usr/include/stdint.h" 3 # 233 "/usr/include/stdint.h" 3 # 254 "/usr/include/stdint.h" 3 # 286 "/usr/include/stdint.h" 3 # 296 "/usr/include/stdint.h" 3 # 305 "/usr/include/stdint.h" 3 # 10 "/usr/lib64/gcc/x86_64-suse-linux/4.8/include/stdint.h" 2 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 2 3 # 85 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stdint.h" 3 # 23 "/usr/include/netinet/in.h" 2 3 # 1 "/usr/include/sys/socket.h" 1 3 # 1 "/usr/include/sys/uio.h" 1 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 # 199 "/usr/include/sys/types.h" 3 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 217 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 24 "/usr/include/sys/uio.h" 2 3 # 1 "/usr/include/bits/uio.h" 1 3 struct iovec { void *iov_base; size_t iov_len; }; # 29 "/usr/include/sys/uio.h" 2 3 extern ssize_t readv (int __fd, const struct iovec *__iovec, int __count) ; extern ssize_t writev (int __fd, const struct iovec *__iovec, int __count) ; extern ssize_t preadv (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; extern ssize_t pwritev (int __fd, const struct iovec *__iovec, int __count, __off_t __offset) ; # 92 "/usr/include/sys/uio.h" 3 # 119 "/usr/include/sys/uio.h" 3 # 27 "/usr/include/sys/socket.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 29 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/bits/socket.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 28 "/usr/include/bits/socket.h" 2 3 typedef __socklen_t socklen_t; # 1 "/usr/include/bits/socket_type.h" 1 3 enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 00004000 }; # 39 "/usr/include/bits/socket.h" 2 3 # 84 "/usr/include/bits/socket.h" 3 # 129 "/usr/include/bits/socket.h" 3 # 141 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/bits/sockaddr.h" 1 3 typedef unsigned short int sa_family_t; # 147 "/usr/include/bits/socket.h" 2 3 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, # 184 "/usr/include/bits/socket.h" 3 MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_FASTOPEN = 0x20000000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 271 "/usr/include/bits/socket.h" 3 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__ , __leaf__)); extern __inline __attribute__ ((__gnu_inline__)) struct cmsghdr * __attribute__ ((__nothrow__ , __leaf__)) __cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) { if ((size_t) __cmsg->cmsg_len < sizeof (struct cmsghdr)) return (struct cmsghdr *) 0; __cmsg = (struct cmsghdr *) ((unsigned char *) __cmsg + (((__cmsg->cmsg_len) + sizeof (size_t) - 1) & (size_t) ~(sizeof (size_t) - 1))); if ((unsigned char *) (__cmsg + 1) > ((unsigned char *) __mhdr->msg_control + __mhdr->msg_controllen) || ((unsigned char *) __cmsg + (((__cmsg->cmsg_len) + sizeof (size_t) - 1) & (size_t) ~(sizeof (size_t) - 1)) > ((unsigned char *) __mhdr->msg_control + __mhdr->msg_controllen))) return (struct cmsghdr *) 0; return __cmsg; } enum { SCM_RIGHTS = 0x01 }; # 318 "/usr/include/bits/socket.h" 3 # 343 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/asm/socket.h" 1 3 # 1 "/usr/include/asm-generic/socket.h" 1 3 # 1 "/usr/include/asm/sockios.h" 1 3 # 1 "/usr/include/asm-generic/sockios.h" 1 3 # 12 "/usr/include/asm-generic/sockios.h" 3 # 2 "/usr/include/asm/sockios.h" 2 3 # 5 "/usr/include/asm-generic/socket.h" 2 3 # 34 "/usr/include/asm-generic/socket.h" 3 # 2 "/usr/include/asm/socket.h" 2 3 # 346 "/usr/include/bits/socket.h" 2 3 # 377 "/usr/include/bits/socket.h" 3 struct linger { int l_onoff; int l_linger; }; # 39 "/usr/include/sys/socket.h" 2 3 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 98 "/usr/include/sys/socket.h" 3 # 108 "/usr/include/sys/socket.h" 3 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__ , __leaf__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__ , __leaf__)); extern int bind (int __fd, const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__ , __leaf__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern int connect (int __fd, const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__ , __leaf__)); extern ssize_t send (int __fd, const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, const void *__buf, size_t __n, int __flags, const struct sockaddr * __addr, socklen_t __addr_len); extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, const struct msghdr *__message, int __flags); # 196 "/usr/include/sys/socket.h" 3 extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); # 214 "/usr/include/sys/socket.h" 3 extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int setsockopt (int __fd, int __level, int __optname, const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__ , __leaf__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__ , __leaf__)); extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 254 "/usr/include/sys/socket.h" 3 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__ , __leaf__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__ , __leaf__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__ , __leaf__)); # 24 "/usr/include/netinet/in.h" 2 3 typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; # 1 "/usr/include/bits/in.h" 1 3 # 35 "/usr/include/bits/in.h" 3 # 67 "/usr/include/bits/in.h" 3 # 87 "/usr/include/bits/in.h" 3 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 146 "/usr/include/bits/in.h" 3 # 166 "/usr/include/bits/in.h" 3 # 178 "/usr/include/bits/in.h" 3 # 38 "/usr/include/netinet/in.h" 2 3 enum { IPPROTO_IP = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_MTP = 92, IPPROTO_BEETPH = 94, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; enum { IPPROTO_HOPOPTS = 0, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MH = 135 }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 # 386 "/usr/include/netinet/in.h" 2 3 # 407 "/usr/include/netinet/in.h" 3 # 416 "/usr/include/netinet/in.h" 3 # 424 "/usr/include/netinet/in.h" 3 # 441 "/usr/include/netinet/in.h" 3 # 449 "/usr/include/netinet/in.h" 3 # 496 "/usr/include/netinet/in.h" 3 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__ , __leaf__)); # 627 "/usr/include/netinet/in.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST check_siginfo_t from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 26 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 30 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 58 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 96 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 433 "/usr/include/time.h" 3 # 133 "/usr/include/sys/types.h" 2 3 # 144 "/usr/include/sys/types.h" 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 147 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 185 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 217 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 23 "/usr/include/bits/select.h" 2 3 # 43 "/usr/include/bits/select.h" 3 # 57 "/usr/include/bits/select.h" 3 # 31 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 34 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 # 83 "/usr/include/time.h" 3 # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 44 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 98 "/usr/include/bits/time.h" 3 # 46 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 220 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_major (unsigned long long int __dev) { return ((__dev >> 8) & 0xfff) | ((unsigned int) (__dev >> 32) & ~0xfff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_minor (unsigned long long int __dev) { return (__dev & 0xff) | ((unsigned int) (__dev >> 12) & ~0xff); } __extension__ extern __inline __attribute__ ((__gnu_inline__)) __attribute__ ((__const__)) unsigned long long int __attribute__ ((__nothrow__ , __leaf__)) gnu_dev_makedev (unsigned int __major, unsigned int __minor) { return ((__minor & 0xff) | ((__major & 0xfff) << 8) | (((unsigned long long int) (__minor & ~0xff)) << 12) | (((unsigned long long int) (__major & ~0xfff)) << 32)); } # 223 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 260 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 271 "/usr/include/sys/types.h" 2 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c(11): error: identifier "not" is undefined not big endian ^ /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c(11): error: expected a ";" not big endian ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/types.py:356) Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_C" to "1" Popping language C Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { __attribute__((visibility ("default"))) int foo(void);; return 0; } Defined "USE_VISIBILITY_CXX" to "1" Popping language Cxx ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -lsocket -lnsl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lsocket Popping language C ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -lfpe -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lfpe Popping language C ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -lsocket -lnsl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lsocket Popping language C ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -lfpe -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lfpe Popping language C ================================================================================ TEST checkMath from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:293) TESTING: checkMathLog2 from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:293) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log2(double); static void _check_log2() { double x = 1,y; y = log2(x); ; } int main() { _check_log2();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkCompression from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:302) TESTING: checkCompression from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:302) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Compression functions are linked in by default ================================================================================ TEST checkRealtime from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:323) TESTING: checkRealtime from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:323) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:339) TESTING: checkDynamic from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:339) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 23 "/usr/include/dlfcn.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 25 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/include/bits/dlfcn.h" 1 3 # 28 "/usr/include/dlfcn.h" 2 3 # 50 "/usr/include/dlfcn.h" 3 extern void *dlopen (const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, const char *__restrict __name) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); # 78 "/usr/include/dlfcn.h" 3 extern char *dlerror (void) __attribute__ ((__nothrow__ , __leaf__)); # 186 "/usr/include/dlfcn.h" 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `bgl_perfctr_void' Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `ADIOI_BGL_Open' Popping language C *********BGL/IBM test failure Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/libraryOptions.py:91) TESTING: configureISColorValueType from PETSc.options.libraryOptions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/PETSc/options/libraryOptions.py:91) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_SIZE" to "PETSC_SIZEOF_SHORT" ================================================================================ TEST configureCPURelax from config.atomics(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST checkMemcmp from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 # 1 "/usr/include/linux/sysinfo.h" 1 3 # 1 "/usr/include/linux/types.h" 1 3 # 1 "/usr/include/asm/types.h" 1 3 # 1 "/usr/include/asm-generic/types.h" 1 3 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 # 1 "/usr/include/asm/bitsperlong.h" 1 3 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 # 11 "/usr/include/asm/bitsperlong.h" 2 3 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 # 5 "/usr/include/asm/types.h" 2 3 # 5 "/usr/include/linux/types.h" 2 3 # 1 "/usr/include/linux/posix_types.h" 1 3 # 1 "/usr/include/linux/stddef.h" 1 3 # 5 "/usr/include/linux/posix_types.h" 2 3 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/asm/posix_types.h" 1 3 # 1 "/usr/include/asm/posix_types_64.h" 1 3 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/asm/posix_types_64.h" 2 3 # 7 "/usr/include/asm/posix_types.h" 2 3 # 36 "/usr/include/linux/posix_types.h" 2 3 # 9 "/usr/include/linux/types.h" 2 3 # 26 "/usr/include/linux/types.h" 3 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/sys/sysinfo.h" 2 3 # 1 "/usr/include/linux/kernel.h" 1 3 # 1 "/usr/include/linux/sysinfo.h" 1 3 # 1 "/usr/include/linux/types.h" 1 3 # 1 "/usr/include/asm/types.h" 1 3 # 1 "/usr/include/asm-generic/types.h" 1 3 # 1 "/usr/include/asm-generic/int-ll64.h" 1 3 # 1 "/usr/include/asm/bitsperlong.h" 1 3 # 1 "/usr/include/asm-generic/bitsperlong.h" 1 3 # 11 "/usr/include/asm/bitsperlong.h" 2 3 # 12 "/usr/include/asm-generic/int-ll64.h" 2 3 typedef __signed__ char __s8; typedef unsigned char __u8; typedef __signed__ short __s16; typedef unsigned short __u16; typedef __signed__ int __s32; typedef unsigned int __u32; __extension__ typedef __signed__ long long __s64; __extension__ typedef unsigned long long __u64; # 8 "/usr/include/asm-generic/types.h" 2 3 # 5 "/usr/include/asm/types.h" 2 3 # 5 "/usr/include/linux/types.h" 2 3 # 1 "/usr/include/linux/posix_types.h" 1 3 # 1 "/usr/include/linux/stddef.h" 1 3 # 5 "/usr/include/linux/posix_types.h" 2 3 typedef struct { unsigned long fds_bits[1024 / (8 * sizeof(long))]; } __kernel_fd_set; typedef void (*__kernel_sighandler_t)(int); typedef int __kernel_key_t; typedef int __kernel_mqd_t; # 1 "/usr/include/asm/posix_types.h" 1 3 # 1 "/usr/include/asm/posix_types_64.h" 1 3 typedef unsigned short __kernel_old_uid_t; typedef unsigned short __kernel_old_gid_t; typedef unsigned long __kernel_old_dev_t; # 1 "/usr/include/asm-generic/posix_types.h" 1 3 typedef long __kernel_long_t; typedef unsigned long __kernel_ulong_t; typedef __kernel_ulong_t __kernel_ino_t; typedef unsigned int __kernel_mode_t; typedef int __kernel_pid_t; typedef int __kernel_ipc_pid_t; typedef unsigned int __kernel_uid_t; typedef unsigned int __kernel_gid_t; typedef __kernel_long_t __kernel_suseconds_t; typedef int __kernel_daddr_t; typedef unsigned int __kernel_uid32_t; typedef unsigned int __kernel_gid32_t; # 71 "/usr/include/asm-generic/posix_types.h" 3 typedef __kernel_ulong_t __kernel_size_t; typedef __kernel_long_t __kernel_ssize_t; typedef __kernel_long_t __kernel_ptrdiff_t; typedef struct { int val[2]; } __kernel_fsid_t; typedef __kernel_long_t __kernel_off_t; typedef long long __kernel_loff_t; typedef __kernel_long_t __kernel_time_t; typedef __kernel_long_t __kernel_clock_t; typedef int __kernel_timer_t; typedef int __kernel_clockid_t; typedef char * __kernel_caddr_t; typedef unsigned short __kernel_uid16_t; typedef unsigned short __kernel_gid16_t; # 18 "/usr/include/asm/posix_types_64.h" 2 3 # 7 "/usr/include/asm/posix_types.h" 2 3 # 36 "/usr/include/linux/posix_types.h" 2 3 # 9 "/usr/include/linux/types.h" 2 3 # 26 "/usr/include/linux/types.h" 3 typedef __u16 __le16; typedef __u16 __be16; typedef __u32 __le32; typedef __u32 __be32; typedef __u64 __le64; typedef __u64 __be64; typedef __u16 __sum16; typedef __u32 __wsum; # 5 "/usr/include/linux/sysinfo.h" 2 3 struct sysinfo { __kernel_long_t uptime; __kernel_ulong_t loads[3]; __kernel_ulong_t totalram; __kernel_ulong_t freeram; __kernel_ulong_t sharedram; __kernel_ulong_t bufferram; __kernel_ulong_t totalswap; __kernel_ulong_t freeswap; __u16 procs; __u16 pad; __kernel_ulong_t totalhigh; __kernel_ulong_t freehigh; __u32 mem_unit; char _f[20-2*sizeof(__kernel_ulong_t)-sizeof(__u32)]; }; # 5 "/usr/include/linux/kernel.h" 2 3 # 25 "/usr/include/sys/sysinfo.h" 2 3 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__ , __leaf__)); extern int get_nprocs (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__ , __leaf__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^: Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c(13): error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_VPRINTF" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl ================================================================================ TEST checkVFPrintf from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_VFPRINTF" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { _vsnprintf(0,0,0,0); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x3a): undefined reference to `_vsnprintf' Checking for functions [vsnprintf] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl ================================================================================ TEST checkNanosleep from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:206) TESTING: checkNanosleep from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:206) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:182) TESTING: checkSignalHandlerType from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:182) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:192) TESTING: checkFreeReturnType from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:192) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c(6): error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:198) TESTING: checkVariableArgumentLists from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:198) Checks whether the variable argument list functionality is working Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times _mkdir time sysctlbyname stricmp] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char _mkdir(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x10d): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking conftest.c:(.text+0x64): warning: the `getwd' function is dangerous and should not be used. conftest.c:(.text+0xe5): warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking conftest.c:(.text+0x3e): undefined reference to `_sleep' conftest.c:(.text+0x5d): undefined reference to `_getcwd' conftest.c:(.text+0x72): undefined reference to `_lseek' conftest.c:(.text+0x7e): undefined reference to `_access' conftest.c:(.text+0xb0): undefined reference to `_snprintf' conftest.c:(.text+0xcd): undefined reference to `sbreak' conftest.c:(.text+0xf8): undefined reference to `_set_output_format' conftest.c:(.text+0xff): undefined reference to `PXFGETARG' conftest.c:(.text+0x139): undefined reference to `_mkdir' conftest.c:(.text+0x145): undefined reference to `sysctlbyname' conftest.c:(.text+0x14c): undefined reference to `stricmp' Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Checking for functions [getpagesize memalign sigset gettimeofday readlink sigaction strcasecmp drand48 socket memmove signal popen getrusage times] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getpagesize(); char memalign(); char sigset(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_GETPAGESIZE" to "1" Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Checking for functions [_sleep] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `_sleep' Checking for functions [snprintf] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `_getcwd' Checking for functions [getwd] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `_lseek' Checking for functions [sleep] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `_access' Checking for functions [lseek] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `_snprintf' Checking for functions [sbreak] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `sbreak' Checking for functions [getcwd] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [gethostbyname] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char gethostbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Defined "HAVE_GETHOSTBYNAME" to "1" Checking for functions [_set_output_format] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `_set_output_format' Checking for functions [PXFGETARG] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `PXFGETARG' Checking for functions [dlopen] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char dlopen(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Defined "HAVE_DLOPEN" to "1" Checking for functions [_mkdir] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _mkdir(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__mkdir) || defined (__stub____mkdir) _mkdir_will_always_fail_with_ENOSYS(); #else _mkdir(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `_mkdir' Checking for functions [time] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_TIME" to "1" Checking for functions [sysctlbyname] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `sysctlbyname' Checking for functions [stricmp] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `stricmp' ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.c(4): catastrophic error: cannot open source file "sysctl.h" #include ^ compilation aborted for /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMissingDefines from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:110) Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/missing.py:135) Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language Cxx ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^: Checking for header: fpxcp.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^: Checking for header: floatingpoint.h Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^: ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg i = command_argument_count() call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language FC Popping language FC Pushing language C Defined "HAVE_GETARG" to "1" Defined "HAVE_PXFGETARG_NEW" to "1" Popping language C Checking for functions [get_command_argument_] in library [''] ['-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64', '-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib', '-L/global/common/cori/software/darshan/3.0.1/lib', '-L/opt/cray/rca/1.0.0-6.21/lib64', '-L/opt/cray/alps/6.1.3-17.12/lib64', '-L/opt/cray/xpmem/0.1-4.5/lib64', '-L/opt/cray/dmapp/7.1.0-12.37/lib64', '-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64', '-L/opt/cray/ugni/6.0.12-2.1/lib64', '-L/opt/cray/udreg/2.3.2-4.6/lib64', '-L/opt/cray/pe/atp/2.0.2/libApp', '-L/opt/cray/wlm_detect/1.1.0-4.2/lib64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/usr/lib64/gcc/x86_64-suse-linux/4.8', '-L/usr/x86_64-suse-linux/lib', '-lmpichf90_intel', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm'] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `get_command_argument_' Popping language C Checking for functions [getarg_] in library [''] ['-L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64', '-L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib', '-L/opt/cray/dmapp/default/lib64', '-L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib', '-L/global/common/cori/software/darshan/3.0.1/lib', '-L/opt/cray/rca/1.0.0-6.21/lib64', '-L/opt/cray/alps/6.1.3-17.12/lib64', '-L/opt/cray/xpmem/0.1-4.5/lib64', '-L/opt/cray/dmapp/7.1.0-12.37/lib64', '-L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64', '-L/opt/cray/ugni/6.0.12-2.1/lib64', '-L/opt/cray/udreg/2.3.2-4.6/lib64', '-L/opt/cray/pe/atp/2.0.2/libApp', '-L/opt/cray/wlm_detect/1.1.0-4.2/lib64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin', '-L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin', '-L/usr/lib64/gcc/x86_64-suse-linux/4.8', '-L/usr/x86_64-suse-linux/lib', '-lmpichf90_intel', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm', '-lm'] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Pushing language C Popping language C Checking for functions [ipxfargc_] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichf90_intel -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm -lm Defined "HAVE_IPXFARGC_" to "1" ================================================================================ TEST configureMkdir from config.programs(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/programs.py:23) TESTING: configureMkdir from config.programs(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/programs.py:23) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/common/software/mercurial/3.8.3/bin/mkdir...not found Checking for program /usr/common/software/cmake/3.3.2//bin/mkdir...not found Checking for program /usr/common/software/darshan/3.0.1/bin/mkdir...not found Checking for program /usr/common/usg/bin/mkdir...not found Checking for program /usr/common/mss/bin/mkdir...not found Checking for program /usr/common/nsg/bin/mkdir...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/mkdir...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/mkdir...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/mkdir...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/mkdir...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/mkdir...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/mkdir...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mkdir...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/mkdir...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/mkdir...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/mkdir...not found Checking for program /usr/syscom/nsg/sbin/mkdir...not found Checking for program /usr/syscom/nsg/bin/mkdir...not found Checking for program /opt/modules/3.2.6.7/bin/mkdir...not found Checking for program /global/homes/g/gpau/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...found Executing: /usr/bin/mkdir -p .conftest/tmp Adding -p flag to /usr/bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/usr/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/programs.py:45) TESTING: configureAutoreconf from config.programs(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/programs.py:45) Check for autoreconf Checking for program /usr/common/software/mercurial/3.8.3/bin/autoreconf...not found Checking for program /usr/common/software/cmake/3.3.2//bin/autoreconf...not found Checking for program /usr/common/software/darshan/3.0.1/bin/autoreconf...not found Checking for program /usr/common/usg/bin/autoreconf...not found Checking for program /usr/common/mss/bin/autoreconf...not found Checking for program /usr/common/nsg/bin/autoreconf...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/autoreconf...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/autoreconf...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/autoreconf...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/autoreconf...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/autoreconf...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/autoreconf...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/autoreconf...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/autoreconf...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/autoreconf...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/autoreconf...not found Checking for program /usr/syscom/nsg/sbin/autoreconf...not found Checking for program /usr/syscom/nsg/bin/autoreconf...not found Checking for program /opt/modules/3.2.6.7/bin/autoreconf...not found Checking for program /global/homes/g/gpau/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...found All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.programs Executing: cd /global/cscratch1/sd/gpau/petsc-ffbsUg/config.programs/autoconfdir&&/usr/bin/autoreconf autoreconf test successful! Checking for program /usr/common/software/mercurial/3.8.3/bin/libtoolize...not found Checking for program /usr/common/software/cmake/3.3.2//bin/libtoolize...not found Checking for program /usr/common/software/darshan/3.0.1/bin/libtoolize...not found Checking for program /usr/common/usg/bin/libtoolize...not found Checking for program /usr/common/mss/bin/libtoolize...not found Checking for program /usr/common/nsg/bin/libtoolize...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/libtoolize...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/libtoolize...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/libtoolize...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/libtoolize...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/libtoolize...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/libtoolize...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/libtoolize...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/libtoolize...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/libtoolize...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/libtoolize...not found Checking for program /usr/syscom/nsg/sbin/libtoolize...not found Checking for program /usr/syscom/nsg/bin/libtoolize...not found Checking for program /opt/modules/3.2.6.7/bin/libtoolize...not found Checking for program /global/homes/g/gpau/bin/libtoolize...not found Checking for program /usr/local/bin/libtoolize...not found Checking for program /usr/bin/libtoolize...found ================================================================================ TEST configurePrograms from config.programs(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/programs.py:72) TESTING: configurePrograms from config.programs(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/programs.py:72) Check for the programs needed to build and run PETSc Checking for program /usr/common/software/mercurial/3.8.3/bin/sh...not found Checking for program /usr/common/software/cmake/3.3.2//bin/sh...not found Checking for program /usr/common/software/darshan/3.0.1/bin/sh...not found Checking for program /usr/common/usg/bin/sh...not found Checking for program /usr/common/mss/bin/sh...not found Checking for program /usr/common/nsg/bin/sh...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/sh...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/sh...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/sh...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/sh...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/sh...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/sh...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/sh...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/sh...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/sh...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/sh...not found Checking for program /usr/syscom/nsg/sbin/sh...not found Checking for program /usr/syscom/nsg/bin/sh...not found Checking for program /opt/modules/3.2.6.7/bin/sh...not found Checking for program /global/homes/g/gpau/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...found Defined make macro "SHELL" to "/usr/bin/sh" Checking for program /usr/common/software/mercurial/3.8.3/bin/sed...not found Checking for program /usr/common/software/cmake/3.3.2//bin/sed...not found Checking for program /usr/common/software/darshan/3.0.1/bin/sed...not found Checking for program /usr/common/usg/bin/sed...not found Checking for program /usr/common/mss/bin/sed...not found Checking for program /usr/common/nsg/bin/sed...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/sed...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/sed...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/sed...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/sed...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/sed...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/sed...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/sed...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/sed...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/sed...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/sed...not found Checking for program /usr/syscom/nsg/sbin/sed...not found Checking for program /usr/syscom/nsg/bin/sed...not found Checking for program /opt/modules/3.2.6.7/bin/sed...not found Checking for program /global/homes/g/gpau/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" Executing: /usr/bin/sed -i s/sed/sd/g "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i Defined make macro "SEDINPLACE" to "/usr/bin/sed -i" Checking for program /usr/common/software/mercurial/3.8.3/bin/mv...not found Checking for program /usr/common/software/cmake/3.3.2//bin/mv...not found Checking for program /usr/common/software/darshan/3.0.1/bin/mv...not found Checking for program /usr/common/usg/bin/mv...not found Checking for program /usr/common/mss/bin/mv...not found Checking for program /usr/common/nsg/bin/mv...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/mv...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/mv...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/mv...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/mv...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/mv...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/mv...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mv...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/mv...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/mv...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/mv...not found Checking for program /usr/syscom/nsg/sbin/mv...not found Checking for program /usr/syscom/nsg/bin/mv...not found Checking for program /opt/modules/3.2.6.7/bin/mv...not found Checking for program /global/homes/g/gpau/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...found Defined make macro "MV" to "/usr/bin/mv" Checking for program /usr/common/software/mercurial/3.8.3/bin/cp...not found Checking for program /usr/common/software/cmake/3.3.2//bin/cp...not found Checking for program /usr/common/software/darshan/3.0.1/bin/cp...not found Checking for program /usr/common/usg/bin/cp...not found Checking for program /usr/common/mss/bin/cp...not found Checking for program /usr/common/nsg/bin/cp...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/cp...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/cp...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/cp...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/cp...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/cp...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/cp...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/cp...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/cp...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/cp...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/cp...not found Checking for program /usr/syscom/nsg/sbin/cp...not found Checking for program /usr/syscom/nsg/bin/cp...not found Checking for program /opt/modules/3.2.6.7/bin/cp...not found Checking for program /global/homes/g/gpau/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...found Defined make macro "CP" to "/usr/bin/cp" Checking for program /usr/common/software/mercurial/3.8.3/bin/grep...not found Checking for program /usr/common/software/cmake/3.3.2//bin/grep...not found Checking for program /usr/common/software/darshan/3.0.1/bin/grep...not found Checking for program /usr/common/usg/bin/grep...not found Checking for program /usr/common/mss/bin/grep...not found Checking for program /usr/common/nsg/bin/grep...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/grep...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/grep...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/grep...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/grep...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/grep...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/grep...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/grep...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/grep...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/grep...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/grep...not found Checking for program /usr/syscom/nsg/sbin/grep...not found Checking for program /usr/syscom/nsg/bin/grep...not found Checking for program /opt/modules/3.2.6.7/bin/grep...not found Checking for program /global/homes/g/gpau/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/common/software/mercurial/3.8.3/bin/rm...not found Checking for program /usr/common/software/cmake/3.3.2//bin/rm...not found Checking for program /usr/common/software/darshan/3.0.1/bin/rm...not found Checking for program /usr/common/usg/bin/rm...not found Checking for program /usr/common/mss/bin/rm...not found Checking for program /usr/common/nsg/bin/rm...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/rm...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/rm...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/rm...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/rm...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/rm...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/rm...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/rm...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/rm...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/rm...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/rm...not found Checking for program /usr/syscom/nsg/sbin/rm...not found Checking for program /usr/syscom/nsg/bin/rm...not found Checking for program /opt/modules/3.2.6.7/bin/rm...not found Checking for program /global/homes/g/gpau/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...found Defined make macro "RM" to "/usr/bin/rm -f" Checking for program /usr/common/software/mercurial/3.8.3/bin/diff...not found Checking for program /usr/common/software/cmake/3.3.2//bin/diff...not found Checking for program /usr/common/software/darshan/3.0.1/bin/diff...not found Checking for program /usr/common/usg/bin/diff...not found Checking for program /usr/common/mss/bin/diff...not found Checking for program /usr/common/nsg/bin/diff...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/diff...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/diff...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/diff...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/diff...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/diff...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/diff...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/diff...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/diff...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/diff...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/diff...not found Checking for program /usr/syscom/nsg/sbin/diff...not found Checking for program /usr/syscom/nsg/bin/diff...not found Checking for program /opt/modules/3.2.6.7/bin/diff...not found Checking for program /global/homes/g/gpau/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.programs/diff1" "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /global/homes/g/gpau/ps...not found Checking for program /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/bin/win32fe/ps...not found Checking for program /usr/common/software/mercurial/3.8.3/bin/gzip...not found Checking for program /usr/common/software/cmake/3.3.2//bin/gzip...not found Checking for program /usr/common/software/darshan/3.0.1/bin/gzip...not found Checking for program /usr/common/usg/bin/gzip...not found Checking for program /usr/common/mss/bin/gzip...not found Checking for program /usr/common/nsg/bin/gzip...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/gzip...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/gzip...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/gzip...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/gzip...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/gzip...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/gzip...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/gzip...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/gzip...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/gzip...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/gzip...not found Checking for program /usr/syscom/nsg/sbin/gzip...not found Checking for program /usr/syscom/nsg/bin/gzip...not found Checking for program /opt/modules/3.2.6.7/bin/gzip...not found Checking for program /global/homes/g/gpau/bin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMake from config.packages.make(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/make.py:83) TESTING: configureMake from config.packages.make(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/make.py:83) Check for user specified make - or gmake, make Checking for program /usr/common/software/mercurial/3.8.3/bin/gmake...not found Checking for program /usr/common/software/cmake/3.3.2//bin/gmake...not found Checking for program /usr/common/software/darshan/3.0.1/bin/gmake...not found Checking for program /usr/common/usg/bin/gmake...not found Checking for program /usr/common/mss/bin/gmake...not found Checking for program /usr/common/nsg/bin/gmake...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/gmake...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/gmake...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/gmake...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/gmake...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/gmake...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/gmake...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/gmake...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/gmake...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/gmake...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/gmake...not found Checking for program /usr/syscom/nsg/sbin/gmake...not found Checking for program /usr/syscom/nsg/bin/gmake...not found Checking for program /opt/modules/3.2.6.7/bin/gmake...not found Checking for program /global/homes/g/gpau/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" Executing: /usr/bin/gmake --version stdout: GNU Make 4.0 Built for x86_64-unknown-linux-gnu Copyright (C) 1988-2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. ================================================================================ TEST configureCheckGNUMake from config.packages.make(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/make.py:120) TESTING: configureCheckGNUMake from config.packages.make(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/make.py:120) Setup other GNU make stuff Executing: /usr/bin/gmake --version stdout: GNU Make 4.0 Built for x86_64-unknown-linux-gnu Copyright (C) 1988-2013 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/make.py:158) TESTING: configureMakeNP from config.packages.make(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/make.py:158) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 32 cores: using make_np = 24 Defined make macro "MAKE_NP" to "24" Defined make macro "NPMAX" to "32" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "--output-sync=recurse" ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Executing: uname -s stdout: Linux Executing: uname -s stdout: Linux ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.MPICH(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:483) TESTING: configureLibrary from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:483) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Checking for headers Compiler specific search MPI: ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include -I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/alps/6.1.3-17.12/include -I/opt/cray/xpmem/0.1-4.5/include -I/opt/cray/gni-headers/5.0.7-3.1/include -I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include -I/opt/cray/ugni/6.0.12-2.1/include -I/opt/cray/udreg/2.3.2-4.6/include -I/opt/cray/wlm_detect/1.1.0-4.2/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" 1 # 32 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 39 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 48 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 57 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 64 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 74 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 91 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int MPI_Datatype; # 116 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 137 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 156 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 190 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 199 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 213 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 226 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 236 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 247 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 263 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 318 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 339 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; typedef int MPI_Errhandler; # 443 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18, MPI_COMBINER_HINDEXED_BLOCK = 19 }; typedef int MPI_Info; # 535 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; typedef long long MPI_Offset; typedef struct MPI_Status { int count_lo; int count_hi_and_cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum_s; struct MPIR_T_cvar_handle_s; struct MPIR_T_pvar_handle_s; struct MPIR_T_pvar_session_s; typedef struct MPIR_T_enum_s * MPI_T_enum; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES; typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t; typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO } MPIR_T_bind_t; typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_CONSTANT = 60438, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t; typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIR_T_PVAR_CLASS_FIRST = 240, MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC, MPIR_T_PVAR_CLASS_LAST, MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t; # 700 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 720 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; typedef struct { MPI_Fint count_lo; MPI_Fint count_hi_and_cancelled; MPI_Fint MPI_SOURCE; MPI_Fint MPI_TAG; MPI_Fint MPI_ERROR; } MPI_F08_Status; extern MPI_F08_Status MPIR_F08_MPI_STATUS_IGNORE_OBJ; extern MPI_F08_Status MPIR_F08_MPI_STATUSES_IGNORE_OBJ[1]; extern int MPIR_F08_MPI_IN_PLACE; extern int MPIR_F08_MPI_BOTTOM; extern MPI_F08_Status *MPI_F08_STATUS_IGNORE; extern MPI_F08_Status *MPI_F08_STATUSES_IGNORE; typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); # 783 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 820 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 837 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 846 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 872 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Buffer_attach(void *buffer, int size); int MPI_Buffer_detach(void *buffer_addr, int *size); int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Wait(MPI_Request *request, MPI_Status *status); int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int MPI_Request_free(MPI_Request *request); int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int MPI_Cancel(MPI_Request *request); int MPI_Test_cancelled(const MPI_Status *status, int *flag); int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Start(MPI_Request *request); int MPI_Startall(int count, MPI_Request array_of_requests[]); int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int MPI_Address(const void *location, MPI_Aint *address); int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int MPI_Type_size(MPI_Datatype datatype, int *size); int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_commit(MPI_Datatype *datatype); int MPI_Type_free(MPI_Datatype *datatype); int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int MPI_Barrier(MPI_Comm comm); int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int MPI_Op_free(MPI_Op *op); int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Group_size(MPI_Group group, int *size); int MPI_Group_rank(MPI_Group group, int *rank); int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_free(MPI_Group *group); int MPI_Comm_size(MPI_Comm comm, int *size); int MPI_Comm_rank(MPI_Comm comm, int *rank); int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int MPI_Comm_free(MPI_Comm *comm); int MPI_Comm_test_inter(MPI_Comm comm, int *flag); int MPI_Comm_remote_size(MPI_Comm comm, int *size); int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int MPI_Keyval_free(int *keyval); int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int MPI_Attr_delete(MPI_Comm comm, int keyval); int MPI_Topo_test(MPI_Comm comm, int *status); int MPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int MPI_Dims_create(int nnodes, int ndims, int dims[]); int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int MPI_Cartdim_get(MPI_Comm comm, int *ndims); int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int MPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int MPI_Get_processor_name(char *name, int *resultlen); int MPI_Get_version(int *version, int *subversion); int MPI_Get_library_version(char *version, int *resultlen); int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Errhandler_free(MPI_Errhandler *errhandler); int MPI_Error_string(int errorcode, char *string, int *resultlen); int MPI_Error_class(int errorcode, int *errorclass); double MPI_Wtime(void); double MPI_Wtick(void); int MPI_Init(int *argc, char ***argv); int MPI_Finalize(void); int MPI_Initialized(int *flag); int MPI_Abort(MPI_Comm comm, int errorcode); int MPI_Pcontrol(const int level, ...); int MPIR_Dup_fn(MPI_Comm oldcomm, int keyval, void *extra_state, void *attribute_val_in, void *attribute_val_out, int *flag); int MPI_Close_port(const char *port_name); int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_disconnect(MPI_Comm *comm); int MPI_Comm_get_parent(MPI_Comm *parent); int MPI_Comm_join(int fd, MPI_Comm *intercomm); int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int MPI_Open_port(MPI_Info info, char *port_name); int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int MPIX_PortName_Backlog(char *port_name, int *num_pending_cons); int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Win_complete(MPI_Win win); int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_fence(int assert, MPI_Win win); int MPI_Win_free(MPI_Win *win); int MPI_Win_get_group(MPI_Win win, MPI_Group *group); int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); int MPI_Win_test(MPI_Win win, int *flag); int MPI_Win_unlock(int rank, MPI_Win win); int MPI_Win_wait(MPI_Win win); int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPI_Win_detach(MPI_Win win, const void *base); int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int MPI_Win_set_info(MPI_Win win, MPI_Info info); int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int MPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Win_lock_all(int assert, MPI_Win win); int MPI_Win_unlock_all(MPI_Win win); int MPI_Win_flush(int rank, MPI_Win win); int MPI_Win_flush_all(MPI_Win win); int MPI_Win_flush_local(int rank, MPI_Win win); int MPI_Win_flush_local_all(MPI_Win win); int MPI_Win_sync(MPI_Win win); int MPI_Add_error_class(int *errorclass); int MPI_Add_error_code(int errorclass, int *errorcode); int MPI_Add_error_string(int errorcode, const char *string); int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int MPI_Comm_free_keyval(int *comm_keyval); int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int MPI_File_call_errhandler(MPI_File fh, int errorcode); int MPI_Grequest_complete(MPI_Request request); int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); int MPI_Is_thread_main(int *flag); int MPI_Query_thread(int *provided); int MPI_Status_set_cancelled(MPI_Status *status, int flag); int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int MPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int MPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_free_keyval(int *type_keyval); int MPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int MPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int MPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int MPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int MPI_Win_call_errhandler(MPI_Win win, int errorcode); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int MPI_Win_delete_attr(MPI_Win win, int win_keyval); int MPI_Win_free_keyval(int *win_keyval); int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int MPI_Win_set_name(MPI_Win win, const char *win_name); int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int MPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int MPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int MPI_Finalized(int *flag); int MPI_Free_mem(void *base); int MPI_Get_address(const void *location, MPI_Aint *address); int MPI_Info_create(MPI_Info *info); int MPI_Info_delete(MPI_Info info, const char *key); int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int MPI_Info_set(MPI_Info info, const char *key, const char *value); int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int MPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int MPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int MPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int MPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int MPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int MPI_Type_create_f90_integer(int range, MPI_Datatype *newtype); int MPI_Type_create_f90_real(int precision, int range, MPI_Datatype *newtype); int MPI_Type_create_f90_complex(int precision, int range, MPI_Datatype *newtype); int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int MPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int MPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int MPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); MPI_Aint MPI_Aint_add(MPI_Aint base, MPI_Aint disp); MPI_Aint MPI_Aint_diff(MPI_Aint addr1, MPI_Aint addr2); int MPI_T_init_thread(int required, int *provided); int MPI_T_finalize(void); int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int MPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int MPI_T_cvar_get_num(int *num_cvar); int MPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int MPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int MPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int MPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int MPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int MPI_T_pvar_get_num(int *num_pvar); int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int MPI_T_pvar_session_create(MPI_T_pvar_session *session); int MPI_T_pvar_session_free(MPI_T_pvar_session *session); int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_category_get_num(int *num_cat); int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); int MPI_T_category_get_categories(int cat_index, int len, int indices[]); int MPI_T_category_changed(int *stamp); int MPI_T_cvar_get_index(const char *name, int *cvar_index); int MPI_T_pvar_get_index(const char *name, int var_class, int *pvar_index); int MPI_T_category_get_index(const char *name, int *cat_index); int MPIX_Comm_failure_ack(MPI_Comm comm); int MPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int MPIX_Comm_revoke(MPI_Comm comm); int MPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int MPIX_Comm_agree(MPI_Comm comm, int *flag); int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Buffer_attach(void *buffer, int size); int PMPI_Buffer_detach(void *buffer_addr, int *size); int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Wait(MPI_Request *request, MPI_Status *status); int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int PMPI_Request_free(MPI_Request *request); int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int PMPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int PMPI_Cancel(MPI_Request *request); int PMPI_Test_cancelled(const MPI_Status *status, int *flag); int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Start(MPI_Request *request); int PMPI_Startall(int count, MPI_Request array_of_requests[]); int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int PMPI_Address(const void *location, MPI_Aint *address); int PMPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int PMPI_Type_size(MPI_Datatype datatype, int *size); int PMPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_commit(MPI_Datatype *datatype); int PMPI_Type_free(MPI_Datatype *datatype); int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int PMPI_Barrier(MPI_Comm comm); int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int PMPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int PMPI_Op_free(MPI_Op *op); int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Group_size(MPI_Group group, int *size); int PMPI_Group_rank(MPI_Group group, int *rank); int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_free(MPI_Group *group); int PMPI_Comm_size(MPI_Comm comm, int *size); int PMPI_Comm_rank(MPI_Comm comm, int *rank); int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int PMPI_Comm_free(MPI_Comm *comm); int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); int PMPI_Comm_remote_size(MPI_Comm comm, int *size); int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int PMPI_Keyval_free(int *keyval); int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int PMPI_Attr_delete(MPI_Comm comm, int keyval); int PMPI_Topo_test(MPI_Comm comm, int *status); int PMPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int PMPI_Dims_create(int nnodes, int ndims, int dims[]); int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int PMPI_Get_processor_name(char *name, int *resultlen); int PMPI_Get_version(int *version, int *subversion); int PMPI_Get_library_version(char *version, int *resultlen); int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Errhandler_free(MPI_Errhandler *errhandler); int PMPI_Error_string(int errorcode, char *string, int *resultlen); int PMPI_Error_class(int errorcode, int *errorclass); double PMPI_Wtime(void); double PMPI_Wtick(void); int PMPI_Init(int *argc, char ***argv); int PMPI_Finalize(void); int PMPI_Initialized(int *flag); int PMPI_Abort(MPI_Comm comm, int errorcode); int PMPI_Pcontrol(const int level, ...); int PMPI_Close_port(const char *port_name); int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_disconnect(MPI_Comm *comm); int PMPI_Comm_get_parent(MPI_Comm *parent); int PMPI_Comm_join(int fd, MPI_Comm *intercomm); int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int PMPI_Open_port(MPI_Info info, char *port_name); int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Win_complete(MPI_Win win); int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_fence(int assert, MPI_Win win); int PMPI_Win_free(MPI_Win *win); int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_test(MPI_Win win, int *flag); int PMPI_Win_unlock(int rank, MPI_Win win); int PMPI_Win_wait(MPI_Win win); int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPI_Win_detach(MPI_Win win, const void *base); int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int PMPI_Win_set_info(MPI_Win win, MPI_Info info); int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int PMPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Win_lock_all(int assert, MPI_Win win); int PMPI_Win_unlock_all(MPI_Win win); int PMPI_Win_flush(int rank, MPI_Win win); int PMPI_Win_flush_all(MPI_Win win); int PMPI_Win_flush_local(int rank, MPI_Win win); int PMPI_Win_flush_local_all(MPI_Win win); int PMPI_Win_sync(MPI_Win win); int PMPI_Add_error_class(int *errorclass); int PMPI_Add_error_code(int errorclass, int *errorcode); int PMPI_Add_error_string(int errorcode, const char *string); int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int PMPI_Comm_free_keyval(int *comm_keyval); int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int PMPI_File_call_errhandler(MPI_File fh, int errorcode); int PMPI_Grequest_complete(MPI_Request request); int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); int PMPI_Is_thread_main(int *flag); int PMPI_Query_thread(int *provided); int PMPI_Status_set_cancelled(MPI_Status *status, int flag); int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int PMPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int PMPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_free_keyval(int *type_keyval); int PMPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int PMPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int PMPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int PMPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int PMPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int PMPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); int PMPI_Win_free_keyval(int *win_keyval); int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int PMPI_Win_set_name(MPI_Win win, const char *win_name); int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int PMPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int PMPI_Finalized(int *flag); int PMPI_Free_mem(void *base); int PMPI_Get_address(const void *location, MPI_Aint *address); int PMPI_Info_create(MPI_Info *info); int PMPI_Info_delete(MPI_Info info, const char *key); int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int PMPI_Info_set(MPI_Info info, const char *key, const char *value); int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int PMPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int PMPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int PMPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int PMPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int PMPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int PMPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int PMPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int PMPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int PMPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); MPI_Aint PMPI_Aint_add(MPI_Aint base, MPI_Aint disp); MPI_Aint PMPI_Aint_diff(MPI_Aint addr1, MPI_Aint addr2); int PMPI_T_init_thread(int required, int *provided); int PMPI_T_finalize(void); int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int PMPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int PMPI_T_cvar_get_num(int *num_cvar); int PMPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int PMPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int PMPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int PMPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int PMPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int PMPI_T_pvar_get_num(int *num_pvar); int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_category_get_num(int *num_cat); int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); int PMPI_T_category_changed(int *stamp); int PMPI_T_cvar_get_index(const char *name, int *cvar_index); int PMPI_T_pvar_get_index(const char *name, int var_class, int *pvar_index); int PMPI_T_category_get_index(const char *name, int *cat_index); int PMPIX_Comm_failure_ack(MPI_Comm comm); int PMPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int PMPIX_Comm_revoke(MPI_Comm comm); int PMPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int PMPIX_Comm_agree(MPI_Comm comm, int *flag); # 2217 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 1 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" 1 # 1 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" 1 # 14 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" 2 # 33 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 40 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 53 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 70 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 80 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 90 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 112 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); int MPI_File_close(MPI_File *fh); int MPI_File_delete(const char *filename, MPI_Info info); int MPI_File_set_size(MPI_File fh, MPI_Offset size); int MPI_File_preallocate(MPI_File fh, MPI_Offset size); int MPI_File_get_size(MPI_File fh, MPI_Offset *size); int MPI_File_get_group(MPI_File fh, MPI_Group *group); int MPI_File_get_amode(MPI_File fh, int *amode); int MPI_File_set_info(MPI_File fh, MPI_Info info); int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); int MPI_File_set_atomicity(MPI_File fh, int flag); int MPI_File_get_atomicity(MPI_File fh, int *flag); int MPI_File_sync(MPI_File fh); int MPI_File_iread_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; # 268 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 281 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" MPI_File MPI_File_f2c(MPI_Fint file); MPI_Fint MPI_File_c2f(MPI_File file); # 306 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 335 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" int PMPI_File_open(MPI_Comm, const char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete(const char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, const char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, const void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, const void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep(const char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); int PMPI_File_iread_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iwrite_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iwrite_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; # 493 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 513 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 530 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 2219 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" 2 # 2237 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int MPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int MPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int PMPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:217) TESTING: configureConversion from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:217) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:180) TESTING: configureMPI2 from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:180) Check for functions added to the interface in MPI-2 Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Reduce_local(0, 0, 0, MPI_INT, MPI_SUM));; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_MPI_REDUCE_LOCAL" to "1" ================================================================================ TEST configureTypes from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:237) TESTING: configureTypes from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:237) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:249) TESTING: configureMPITypes from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:249) Checking for MPI Datatype handles Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest ERROR while running executable: Could not execute "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest": [Sat Jul 2 09:21:19 2016] [unknown] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(525): MPID_Init(228).......: channel initialization failed MPID_Init(601).......: PMI2 init failed: 1 Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest ERROR while running executable: Could not execute "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest": [Sat Jul 2 09:21:28 2016] [unknown] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(525): MPID_Init(228).......: channel initialization failed MPID_Init(601).......: PMI2 init failed: 1 Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest to see if it can be run Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest Executing: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest ERROR while running executable: Could not execute "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest": [Sat Jul 2 09:21:36 2016] [unknown] Fatal error in MPI_Init: Other MPI error, error stack: MPIR_Init_thread(525): MPID_Init(228).......: channel initialization failed MPID_Init(601).......: PMI2 init failed: 1 Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:325) TESTING: configureMissingPrototypes from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:325) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:344) TESTING: SGIMPICheck from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:344) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `MPI_SGI_barrier' Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:354) TESTING: CxxMPICheck from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:354) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: /opt/cray/pe/craype/2.5.5/bin/CC -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /opt/cray/pe/craype/2.5.5/bin/CC -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:372) TESTING: FortranMPICheck from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:372) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" end Checking for fortran mpi_init() Checking for functions [] in library [] [] Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language FC Checking for mpi.mod Checking for functions [] in library [] [] Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:397) TESTING: configureIO from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:397) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:459) TESTING: findMPIInc from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:459) Find MPI include paths from "mpicc -show" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -show ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:434) TESTING: checkMPICHorOpenMPI from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:434) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c" 2 # 1 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" 1 # 32 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 39 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 48 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 57 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 64 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 74 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 91 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int MPI_Datatype; # 116 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 137 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 156 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 190 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 199 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 213 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 226 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 236 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 247 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 263 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef struct ADIOI_FileD *MPI_File; typedef int MPI_Op; # 318 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 339 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef enum MPIR_Win_flavor { MPI_WIN_FLAVOR_CREATE = 1, MPI_WIN_FLAVOR_ALLOCATE = 2, MPI_WIN_FLAVOR_DYNAMIC = 3, MPI_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model { MPI_WIN_SEPARATE = 1, MPI_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; extern int * const MPI_WEIGHTS_EMPTY; typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; typedef int MPI_Errhandler; # 443 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int MPI_Request; typedef int MPI_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPI_COMBINER_STRUCT_INTEGER = 11, MPI_COMBINER_STRUCT = 12, MPI_COMBINER_SUBARRAY = 13, MPI_COMBINER_DARRAY = 14, MPI_COMBINER_F90_REAL = 15, MPI_COMBINER_F90_COMPLEX = 16, MPI_COMBINER_F90_INTEGER = 17, MPI_COMBINER_RESIZED = 18, MPI_COMBINER_HINDEXED_BLOCK = 19 }; typedef int MPI_Info; # 535 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; typedef long long MPI_Count; typedef long long MPI_Offset; typedef struct MPI_Status { int count_lo; int count_hi_and_cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum_s; struct MPIR_T_cvar_handle_s; struct MPIR_T_pvar_handle_s; struct MPIR_T_pvar_session_s; typedef struct MPIR_T_enum_s * MPI_T_enum; typedef struct MPIR_T_cvar_handle_s * MPI_T_cvar_handle; typedef struct MPIR_T_pvar_handle_s * MPI_T_pvar_handle; typedef struct MPIR_T_pvar_session_s * MPI_T_pvar_session; extern struct MPIR_T_pvar_handle_s * const MPI_T_PVAR_ALL_HANDLES; typedef enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPI_T_VERBOSITY_USER_BASIC = 221, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL } MPIR_T_verbosity_t; typedef enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPI_T_BIND_NO_OBJECT = 9700, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO } MPIR_T_bind_t; typedef enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPI_T_SCOPE_CONSTANT = 60438, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ } MPIR_T_scope_t; typedef enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIR_T_PVAR_CLASS_FIRST = 240, MPI_T_PVAR_CLASS_STATE = MPIR_T_PVAR_CLASS_FIRST, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC, MPIR_T_PVAR_CLASS_LAST, MPIR_T_PVAR_CLASS_NUMBER = MPIR_T_PVAR_CLASS_LAST - MPIR_T_PVAR_CLASS_FIRST } MPIR_T_pvar_class_t; # 700 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 720 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; typedef struct { MPI_Fint count_lo; MPI_Fint count_hi_and_cancelled; MPI_Fint MPI_SOURCE; MPI_Fint MPI_TAG; MPI_Fint MPI_ERROR; } MPI_F08_Status; extern MPI_F08_Status MPIR_F08_MPI_STATUS_IGNORE_OBJ; extern MPI_F08_Status MPIR_F08_MPI_STATUSES_IGNORE_OBJ[1]; extern int MPIR_F08_MPI_IN_PLACE; extern int MPIR_F08_MPI_BOTTOM; extern MPI_F08_Status *MPI_F08_STATUS_IGNORE; extern MPI_F08_Status *MPI_F08_STATUSES_IGNORE; typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); # 783 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 820 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 837 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 846 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 872 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int MPI_Buffer_attach(void *buffer, int size); int MPI_Buffer_detach(void *buffer_addr, int *size); int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Wait(MPI_Request *request, MPI_Status *status); int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int MPI_Request_free(MPI_Request *request); int MPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int MPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int MPI_Cancel(MPI_Request *request); int MPI_Test_cancelled(const MPI_Status *status, int *flag); int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int MPI_Start(MPI_Request *request); int MPI_Startall(int count, MPI_Request array_of_requests[]); int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int MPI_Address(const void *location, MPI_Aint *address); int MPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int MPI_Type_size(MPI_Datatype datatype, int *size); int MPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int MPI_Type_commit(MPI_Datatype *datatype); int MPI_Type_free(MPI_Datatype *datatype); int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int MPI_Barrier(MPI_Comm comm); int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int MPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int MPI_Op_free(MPI_Op *op); int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Group_size(MPI_Group group, int *size); int MPI_Group_rank(MPI_Group group, int *rank); int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int MPI_Group_free(MPI_Group *group); int MPI_Comm_size(MPI_Comm comm, int *size); int MPI_Comm_rank(MPI_Comm comm, int *rank); int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int MPI_Comm_free(MPI_Comm *comm); int MPI_Comm_test_inter(MPI_Comm comm, int *flag); int MPI_Comm_remote_size(MPI_Comm comm, int *size); int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int MPI_Keyval_free(int *keyval); int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int MPI_Attr_delete(MPI_Comm comm, int keyval); int MPI_Topo_test(MPI_Comm comm, int *status); int MPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int MPI_Dims_create(int nnodes, int ndims, int dims[]); int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int MPI_Cartdim_get(MPI_Comm comm, int *ndims); int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int MPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int MPI_Get_processor_name(char *name, int *resultlen); int MPI_Get_version(int *version, int *subversion); int MPI_Get_library_version(char *version, int *resultlen); int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Errhandler_free(MPI_Errhandler *errhandler); int MPI_Error_string(int errorcode, char *string, int *resultlen); int MPI_Error_class(int errorcode, int *errorclass); double MPI_Wtime(void); double MPI_Wtick(void); int MPI_Init(int *argc, char ***argv); int MPI_Finalize(void); int MPI_Initialized(int *flag); int MPI_Abort(MPI_Comm comm, int errorcode); int MPI_Pcontrol(const int level, ...); int MPIR_Dup_fn(MPI_Comm oldcomm, int keyval, void *extra_state, void *attribute_val_in, void *attribute_val_out, int *flag); int MPI_Close_port(const char *port_name); int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int MPI_Comm_disconnect(MPI_Comm *comm); int MPI_Comm_get_parent(MPI_Comm *parent); int MPI_Comm_join(int fd, MPI_Comm *intercomm); int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int MPI_Open_port(MPI_Info info, char *port_name); int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int MPIX_PortName_Backlog(char *port_name, int *num_pending_cons); int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int MPI_Win_complete(MPI_Win win); int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_fence(int assert, MPI_Win win); int MPI_Win_free(MPI_Win *win); int MPI_Win_get_group(MPI_Win win, MPI_Group *group); int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); int MPI_Win_test(MPI_Win win, int *flag); int MPI_Win_unlock(int rank, MPI_Win win); int MPI_Win_wait(MPI_Win win); int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPI_Win_detach(MPI_Win win, const void *base); int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int MPI_Win_set_info(MPI_Win win, MPI_Info info); int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int MPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int MPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int MPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int MPI_Win_lock_all(int assert, MPI_Win win); int MPI_Win_unlock_all(MPI_Win win); int MPI_Win_flush(int rank, MPI_Win win); int MPI_Win_flush_all(MPI_Win win); int MPI_Win_flush_local(int rank, MPI_Win win); int MPI_Win_flush_local_all(MPI_Win win); int MPI_Win_sync(MPI_Win win); int MPI_Add_error_class(int *errorclass); int MPI_Add_error_code(int errorclass, int *errorcode); int MPI_Add_error_string(int errorcode, const char *string); int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int MPI_Comm_free_keyval(int *comm_keyval); int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int MPI_File_call_errhandler(MPI_File fh, int errorcode); int MPI_Grequest_complete(MPI_Request request); int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); int MPI_Is_thread_main(int *flag); int MPI_Query_thread(int *provided); int MPI_Status_set_cancelled(MPI_Status *status, int flag); int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int MPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int MPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_free_keyval(int *type_keyval); int MPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int MPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int MPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int MPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int MPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int MPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int MPI_Win_call_errhandler(MPI_Win win, int errorcode); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int MPI_Win_delete_attr(MPI_Win win, int win_keyval); int MPI_Win_free_keyval(int *win_keyval); int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int MPI_Win_set_name(MPI_Win win, const char *win_name); int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int MPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int MPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int MPI_Finalized(int *flag); int MPI_Free_mem(void *base); int MPI_Get_address(const void *location, MPI_Aint *address); int MPI_Info_create(MPI_Info *info); int MPI_Info_delete(MPI_Info info, const char *key); int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int MPI_Info_set(MPI_Info info, const char *key, const char *value); int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int MPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int MPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int MPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int MPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int MPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int MPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int MPI_Type_create_f90_integer(int range, MPI_Datatype *newtype); int MPI_Type_create_f90_real(int precision, int range, MPI_Datatype *newtype); int MPI_Type_create_f90_complex(int precision, int range, MPI_Datatype *newtype); int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int MPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int MPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int MPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int MPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); MPI_Aint MPI_Aint_add(MPI_Aint base, MPI_Aint disp); MPI_Aint MPI_Aint_diff(MPI_Aint addr1, MPI_Aint addr2); int MPI_T_init_thread(int required, int *provided); int MPI_T_finalize(void); int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int MPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int MPI_T_cvar_get_num(int *num_cvar); int MPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int MPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int MPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int MPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int MPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int MPI_T_pvar_get_num(int *num_pvar); int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int MPI_T_pvar_session_create(MPI_T_pvar_session *session); int MPI_T_pvar_session_free(MPI_T_pvar_session *session); int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int MPI_T_category_get_num(int *num_cat); int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); int MPI_T_category_get_categories(int cat_index, int len, int indices[]); int MPI_T_category_changed(int *stamp); int MPI_T_cvar_get_index(const char *name, int *cvar_index); int MPI_T_pvar_get_index(const char *name, int var_class, int *pvar_index); int MPI_T_category_get_index(const char *name, int *cat_index); int MPIX_Comm_failure_ack(MPI_Comm comm); int MPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int MPIX_Comm_revoke(MPI_Comm comm); int MPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int MPIX_Comm_agree(MPI_Comm comm, int *flag); int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Rsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm) ; int PMPI_Buffer_attach(void *buffer, int size); int PMPI_Buffer_detach(void *buffer_addr, int *size); int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Wait(MPI_Request *request, MPI_Status *status); int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); int PMPI_Request_free(MPI_Request *request); int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *indx, MPI_Status *status); int PMPI_Testany(int count, MPI_Request array_of_requests[], int *indx, int *flag, MPI_Status *status); int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); int PMPI_Cancel(MPI_Request *request); int PMPI_Test_cancelled(const MPI_Status *status, int *flag); int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request) ; int PMPI_Start(MPI_Request *request); int PMPI_Startall(int count, MPI_Request array_of_requests[]); int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Sendrecv_replace(void *buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status) ; int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_indexed(int count, const int *array_of_blocklengths, const int *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_hindexed(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_struct(int count, const int *array_of_blocklengths, const MPI_Aint *array_of_displacements, const MPI_Datatype *array_of_types, MPI_Datatype *newtype); int PMPI_Address(const void *location, MPI_Aint *address); int PMPI_Type_extent(MPI_Datatype datatype, MPI_Aint *extent); int PMPI_Type_size(MPI_Datatype datatype, int *size); int PMPI_Type_lb(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_ub(MPI_Datatype datatype, MPI_Aint *displacement); int PMPI_Type_commit(MPI_Datatype *datatype); int PMPI_Type_free(MPI_Datatype *datatype); int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm) ; int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm) ; int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); int PMPI_Barrier(MPI_Comm comm); int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm) ; int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Scatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm) ; int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm) ; int PMPI_Op_create(MPI_User_function *user_fn, int commute, MPI_Op *op); int PMPI_Op_free(MPI_Op *op); int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Group_size(MPI_Group group, int *size); int PMPI_Group_rank(MPI_Group group, int *rank); int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); int PMPI_Group_free(MPI_Group *group); int PMPI_Comm_size(MPI_Comm comm, int *size); int PMPI_Comm_rank(MPI_Comm comm, int *rank); int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); int PMPI_Comm_free(MPI_Comm *comm); int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); int PMPI_Comm_remote_size(MPI_Comm comm, int *size); int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm peer_comm, int remote_leader, int tag, MPI_Comm *newintercomm); int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintracomm); int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state); int PMPI_Keyval_free(int *keyval); int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val); int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag); int PMPI_Attr_delete(MPI_Comm comm, int keyval); int PMPI_Topo_test(MPI_Comm comm, int *status); int PMPI_Cart_create(MPI_Comm comm_old, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); int PMPI_Dims_create(int nnodes, int ndims, int dims[]); int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int indx[], const int edges[], int reorder, MPI_Comm *comm_graph); int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int indx[], int edges[]); int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *newcomm); int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int indx[], const int edges[], int *newrank); int PMPI_Get_processor_name(char *name, int *resultlen); int PMPI_Get_version(int *version, int *subversion); int PMPI_Get_library_version(char *version, int *resultlen); int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler); int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Errhandler_free(MPI_Errhandler *errhandler); int PMPI_Error_string(int errorcode, char *string, int *resultlen); int PMPI_Error_class(int errorcode, int *errorclass); double PMPI_Wtime(void); double PMPI_Wtick(void); int PMPI_Init(int *argc, char ***argv); int PMPI_Finalize(void); int PMPI_Initialized(int *flag); int PMPI_Abort(MPI_Comm comm, int errorcode); int PMPI_Pcontrol(const int level, ...); int PMPI_Close_port(const char *port_name); int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); int PMPI_Comm_disconnect(MPI_Comm *comm); int PMPI_Comm_get_parent(MPI_Comm *parent); int PMPI_Comm_join(int fd, MPI_Comm *intercomm); int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); int PMPI_Open_port(MPI_Info info, char *port_name); int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info); int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win) ; int PMPI_Win_complete(MPI_Win win); int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_fence(int assert, MPI_Win win); int PMPI_Win_free(MPI_Win *win); int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); int PMPI_Win_test(MPI_Win win, int *flag); int PMPI_Win_unlock(int rank, MPI_Win win); int PMPI_Win_wait(MPI_Win win); int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPI_Win_detach(MPI_Win win, const void *base); int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); int PMPI_Win_set_info(MPI_Win win, MPI_Info info); int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win) ; int PMPI_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win) ; int PMPI_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win) ; int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request) ; int PMPI_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request) ; int PMPI_Win_lock_all(int assert, MPI_Win win); int PMPI_Win_unlock_all(MPI_Win win); int PMPI_Win_flush(int rank, MPI_Win win); int PMPI_Win_flush_all(MPI_Win win); int PMPI_Win_flush_local(int rank, MPI_Win win); int PMPI_Win_flush_local_all(MPI_Win win); int PMPI_Win_sync(MPI_Win win); int PMPI_Add_error_class(int *errorclass); int PMPI_Add_error_code(int errorclass, int *errorcode); int PMPI_Add_error_string(int errorcode, const char *string); int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); int PMPI_Comm_free_keyval(int *comm_keyval); int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); int PMPI_File_call_errhandler(MPI_File fh, int errorcode); int PMPI_Grequest_complete(MPI_Request request); int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); int PMPI_Is_thread_main(int *flag); int PMPI_Query_thread(int *provided); int PMPI_Status_set_cancelled(MPI_Status *status, int flag); int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); int PMPI_Type_delete_attr(MPI_Datatype datatype, int type_keyval); int PMPI_Type_dup(MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_free_keyval(int *type_keyval); int PMPI_Type_get_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val, int *flag); int PMPI_Type_get_contents(MPI_Datatype datatype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); int PMPI_Type_get_envelope(MPI_Datatype datatype, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); int PMPI_Type_get_name(MPI_Datatype datatype, char *type_name, int *resultlen); int PMPI_Type_set_attr(MPI_Datatype datatype, int type_keyval, void *attribute_val); int PMPI_Type_set_name(MPI_Datatype datatype, const char *type_name); int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *datatype); int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); int PMPI_Win_free_keyval(int *win_keyval); int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); int PMPI_Win_set_name(MPI_Win win, const char *win_name); int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *comm_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *errhandler); int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *file_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_File_get_errhandler(MPI_File file, MPI_Errhandler *errhandler); int PMPI_File_set_errhandler(MPI_File file, MPI_Errhandler errhandler); int PMPI_Finalized(int *flag); int PMPI_Free_mem(void *base); int PMPI_Get_address(const void *location, MPI_Aint *address); int PMPI_Info_create(MPI_Info *info); int PMPI_Info_delete(MPI_Info info, const char *key); int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); int PMPI_Info_set(MPI_Info info, const char *key, const char *value); int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position) ; int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); int PMPI_Status_c2f(const MPI_Status *c_status, MPI_Fint *f_status); int PMPI_Status_f2c(const MPI_Fint *f_status, MPI_Status *c_status); int PMPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsizes[], const int array_of_distribs[], const int array_of_dargs[], const int array_of_psizes[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); int PMPI_Type_create_struct(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); int PMPI_Type_create_subarray(int ndims, const int array_of_sizes[], const int array_of_subsizes[], const int array_of_starts[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); int PMPI_Type_get_extent(MPI_Datatype datatype, MPI_Aint *lb, MPI_Aint *extent); int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); int PMPI_Unpack_external(const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *win_errhandler_fn, MPI_Errhandler *errhandler); int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int sources[], const int degrees[], const int destinations[], const int weights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); int PMPI_Imrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Request *request) ; int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); int PMPI_Mrecv(void *buf, int count, MPI_Datatype datatype, MPI_Message *message, MPI_Status *status) ; int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); int PMPI_Type_get_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *lb, MPI_Count *extent); int PMPI_Type_size_x(MPI_Datatype datatype, MPI_Count *size); MPI_Aint PMPI_Aint_add(MPI_Aint base, MPI_Aint disp); MPI_Aint PMPI_Aint_diff(MPI_Aint addr1, MPI_Aint addr2); int PMPI_T_init_thread(int required, int *provided); int PMPI_T_finalize(void); int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); int PMPI_T_enum_get_item(MPI_T_enum enumtype, int indx, int *value, char *name, int *name_len); int PMPI_T_cvar_get_num(int *num_cvar); int PMPI_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *scope); int PMPI_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); int PMPI_T_cvar_handle_free(MPI_T_cvar_handle *handle); int PMPI_T_cvar_read(MPI_T_cvar_handle handle, void *buf); int PMPI_T_cvar_write(MPI_T_cvar_handle handle, const void *buf); int PMPI_T_pvar_get_num(int *num_pvar); int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *binding, int *readonly, int *continuous, int *atomic); int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); int PMPI_T_category_get_num(int *num_cat); int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); int PMPI_T_category_changed(int *stamp); int PMPI_T_cvar_get_index(const char *name, int *cvar_index); int PMPI_T_pvar_get_index(const char *name, int var_class, int *pvar_index); int PMPI_T_category_get_index(const char *name, int *cat_index); int PMPIX_Comm_failure_ack(MPI_Comm comm); int PMPIX_Comm_failure_get_acked(MPI_Comm comm, MPI_Group *failedgrp); int PMPIX_Comm_revoke(MPI_Comm comm); int PMPIX_Comm_shrink(MPI_Comm comm, MPI_Comm *newcomm); int PMPIX_Comm_agree(MPI_Comm comm, int *flag); # 2217 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" # 1 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" 1 # 1 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" 1 # 14 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" 2 # 33 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 40 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 53 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 70 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 80 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 90 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 112 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); int MPI_File_close(MPI_File *fh); int MPI_File_delete(const char *filename, MPI_Info info); int MPI_File_set_size(MPI_File fh, MPI_Offset size); int MPI_File_preallocate(MPI_File fh, MPI_Offset size); int MPI_File_get_size(MPI_File fh, MPI_Offset *size); int MPI_File_get_group(MPI_File fh, MPI_Group *group); int MPI_File_get_amode(MPI_File fh, int *amode); int MPI_File_set_info(MPI_File fh, MPI_Info info); int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void * buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status) ; int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype) ; int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype) ; int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); int MPI_File_set_atomicity(MPI_File fh, int flag); int MPI_File_get_atomicity(MPI_File fh, int *flag); int MPI_File_sync(MPI_File fh); int MPI_File_iread_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int MPI_File_iwrite_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; # 268 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 281 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" MPI_File MPI_File_f2c(MPI_Fint file); MPI_Fint MPI_File_c2f(MPI_File file); # 306 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 335 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" int PMPI_File_open(MPI_Comm, const char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete(const char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, const char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, const void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, const void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, const void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, const void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, const void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, const void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep(const char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); int PMPI_File_iread_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iwrite_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; int PMPI_File_iwrite_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request) ; # 493 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 513 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 530 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpio.h" # 2219 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" 2 # 2237 "/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include/mpi.h" typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int MPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int MPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, MPIX_Grequest_class *greq_class); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class greq_class, void *extra_state, MPI_Request *request); int PMPIX_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, MPIX_Grequest_poll_function *poll_fn, MPIX_Grequest_wait_function *wait_fn, void *extra_state, MPI_Request *request); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c" 2 int mpich_ver = 30200201; Defined "HAVE_MPICH_NUMVERSION" to "30200201" Checking for functions [MPI_Alltoallw] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan MPI_Reduce_scatter MPI_Reduce_scatter_block] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } char MPI_Reduce_scatter(); static void _check_MPI_Reduce_scatter() { MPI_Reduce_scatter(); } char MPI_Reduce_scatter_block(); static void _check_MPI_Reduce_scatter_block() { MPI_Reduce_scatter_block(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan(); _check_MPI_Reduce_scatter(); _check_MPI_Reduce_scatter_block();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Defined "HAVE_MPI_REDUCE_SCATTER" to "1" Defined "HAVE_MPI_REDUCE_SCATTER_BLOCK" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `MPIX_Iallreduce' Popping language C Checking for functions [MPIX_Ibarrier] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Ibarrier(); static void _check_MPIX_Ibarrier() { MPIX_Ibarrier(); } int main() { _check_MPIX_Ibarrier();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `MPIX_Ibarrier' Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `MPIDI_CH3I_sock_set' Popping language C Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `MPIDI_CH3I_sock_fixed_nbc_progress' Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:130) TESTING: checkSharedLibrary from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:130) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:143) TESTING: configureMPIEXEC from config.packages.MPI(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/MPI.py:143) Checking for mpiexec Pushing language C Popping language C Checking for program /usr/common/software/mercurial/3.8.3/bin/mpiexec...not found Checking for program /usr/common/software/mercurial/3.8.3/bin/mpirun...not found Checking for program /usr/common/software/mercurial/3.8.3/bin/mprun...not found Checking for program /usr/common/software/mercurial/3.8.3/bin/mpiexec...not found Checking for program /usr/common/software/mercurial/3.8.3/bin/mpirun...not found Checking for program /usr/common/software/mercurial/3.8.3/bin/mprun...not found Checking for program /usr/common/software/cmake/3.3.2//bin/mpiexec...not found Checking for program /usr/common/software/cmake/3.3.2//bin/mpirun...not found Checking for program /usr/common/software/cmake/3.3.2//bin/mprun...not found Checking for program /usr/common/software/cmake/3.3.2//bin/mpiexec...not found Checking for program /usr/common/software/cmake/3.3.2//bin/mpirun...not found Checking for program /usr/common/software/cmake/3.3.2//bin/mprun...not found Checking for program /usr/common/software/darshan/3.0.1/bin/mpiexec...not found Checking for program /usr/common/software/darshan/3.0.1/bin/mpirun...not found Checking for program /usr/common/software/darshan/3.0.1/bin/mprun...not found Checking for program /usr/common/software/darshan/3.0.1/bin/mpiexec...not found Checking for program /usr/common/software/darshan/3.0.1/bin/mpirun...not found Checking for program /usr/common/software/darshan/3.0.1/bin/mprun...not found Checking for program /usr/common/usg/bin/mpiexec...not found Checking for program /usr/common/usg/bin/mpirun...not found Checking for program /usr/common/usg/bin/mprun...not found Checking for program /usr/common/usg/bin/mpiexec...not found Checking for program /usr/common/usg/bin/mpirun...not found Checking for program /usr/common/usg/bin/mprun...not found Checking for program /usr/common/mss/bin/mpiexec...not found Checking for program /usr/common/mss/bin/mpirun...not found Checking for program /usr/common/mss/bin/mprun...not found Checking for program /usr/common/mss/bin/mpiexec...not found Checking for program /usr/common/mss/bin/mpirun...not found Checking for program /usr/common/mss/bin/mprun...not found Checking for program /usr/common/nsg/bin/mpiexec...not found Checking for program /usr/common/nsg/bin/mpirun...not found Checking for program /usr/common/nsg/bin/mprun...not found Checking for program /usr/common/nsg/bin/mpiexec...not found Checking for program /usr/common/nsg/bin/mpirun...not found Checking for program /usr/common/nsg/bin/mprun...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/mpiexec...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/mpirun...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/mprun...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/mpiexec...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/mpirun...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/mprun...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/mpiexec...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/mpirun...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/mprun...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/mpiexec...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/mpirun...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/mprun...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/mpiexec...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/mpirun...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/mprun...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/mpiexec...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/mpirun...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/mprun...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/mpiexec...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/mpirun...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/mprun...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/mpiexec...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/mpirun...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/mprun...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/mpiexec...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/mpirun...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/mprun...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/mpiexec...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/mpirun...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/mprun...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/mpiexec...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/mpirun...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/mprun...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/mpiexec...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/mpirun...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/mprun...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mpiexec...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mpirun...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mprun...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mpiexec...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mpirun...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/mprun...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/mpiexec...found Defined make macro "MPIEXEC" to "mpiexec" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /usr/bin/ar cr /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/libconftest.a /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o ; /usr/bin/ranlib /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/libconftest.a Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /usr/bin/ar cr /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/libconftest.a /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/conftest.o ; /usr/bin/ranlib /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI/libconftest.a Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/lib1.a", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/lib2.a", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl -ldl Possible ERROR while running linker: stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x4e): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking Testing executable /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest to see if it can be run Executing: mpiexec /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest Executing: mpiexec /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest stdout: mpiexec_cori05: cannot connect to local mpd (/global/cscratch1/sd/gpau/mpd2.console_cori05_gpau); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) ERROR while running executable: Could not execute "mpiexec /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest": mpiexec_cori05: cannot connect to local mpd (/global/cscratch1/sd/gpau/mpd2.console_cori05_gpau); possible causes: 1. no mpd is running on this host 2. an mpd is running but was started without a "console" (-n option) Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.p4est(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.pami(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.opengles(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.Chaco(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.concurrencykit(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.concurrencykit(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.libjpeg(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.libjpeg(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Not a clone of PETSc or no Fortran, don't need Sowing ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.mpe(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.pthread(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/pthread.py:19) TESTING: configureLibrary from config.packages.pthread(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/pthread.py:19) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Popping language C Checking for headers Compiler specific search PTHREAD: ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include -I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/alps/6.1.3-17.12/include -I/opt/cray/xpmem/0.1-4.5/include -I/opt/cray/gni-headers/5.0.7-3.1/include -I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include -I/opt/cray/ugni/6.0.12-2.1/include -I/opt/cray/udreg/2.3.2-4.6/include -I/opt/cray/wlm_detect/1.1.0-4.2/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 37 "/usr/include/endian.h" 2 3 # 50 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 116 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 37 "/usr/include/bits/typesizes.h" 3 # 74 "/usr/include/bits/typesizes.h" 3 # 122 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __fsword_t; typedef long int __ssize_t; typedef long int __syscall_slong_t; typedef unsigned long int __syscall_ulong_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 1 "/usr/include/bits/byteswap-16.h" 1 3 # 36 "/usr/include/bits/byteswap.h" 2 3 static __inline unsigned int __bswap_32 (unsigned int __bsx) { return __builtin_bswap32 (__bsx); } # 93 "/usr/include/bits/byteswap.h" 3 # 106 "/usr/include/bits/byteswap.h" 3 static __inline __uint64_t __bswap_64 (__uint64_t __bsx) { return __builtin_bswap64 (__bsx); } # 154 "/usr/include/bits/byteswap.h" 3 # 61 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 23 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/sched.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 29 "/usr/include/sched.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 32 "/usr/include/time.h" 3 # 51 "/usr/include/time.h" 3 # 67 "/usr/include/time.h" 3 typedef __time_t time_t; # 95 "/usr/include/time.h" 3 # 107 "/usr/include/time.h" 3 # 115 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; __syscall_slong_t tv_nsec; }; # 433 "/usr/include/time.h" 3 # 33 "/usr/include/sched.h" 2 3 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 # 37 "/usr/include/bits/sched.h" 3 # 70 "/usr/include/bits/sched.h" 3 struct sched_param { int __sched_priority; }; # 93 "/usr/include/bits/sched.h" 3 struct __sched_param { int __sched_priority; }; typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[4096 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 165 "/usr/include/bits/sched.h" 3 # 184 "/usr/include/bits/sched.h" 3 # 195 "/usr/include/bits/sched.h" 3 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__ , __leaf__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__ , __leaf__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__ , __leaf__)); # 42 "/usr/include/sched.h" 2 3 extern int sched_setparam (__pid_t __pid, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_setscheduler (__pid_t __pid, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_yield (void) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__ , __leaf__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__ , __leaf__)); # 123 "/usr/include/sched.h" 3 # 24 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 # 46 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 65 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 38 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 37 "/usr/include/bits/time.h" 3 # 58 "/usr/include/bits/time.h" 3 # 95 "/usr/include/bits/time.h" 3 # 42 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 83 "/usr/include/time.h" 3 typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 178 "/usr/include/time.h" 3 extern clock_t clock (void) __attribute__ ((__nothrow__ , __leaf__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); # 217 "/usr/include/time.h" 3 # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 222 "/usr/include/time.h" 2 3 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, const char *__restrict __format, const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *gmtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern struct tm *localtime_r (const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime (const struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime (const time_t *__timer) __attribute__ ((__nothrow__ , __leaf__)); extern char *asctime_r (const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *ctime_r (const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__ , __leaf__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__ , __leaf__)); extern int daylight; extern long int timezone; extern int stime (const time_t *__when) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int dysize (int __year) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int nanosleep (const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_settime (clockid_t __clock_id, const struct timespec *__tp) __attribute__ ((__nothrow__ , __leaf__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_settime (timer_t __timerid, int __flags, const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__ , __leaf__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__ , __leaf__)); # 414 "/usr/include/time.h" 3 # 429 "/usr/include/time.h" 3 # 25 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 22 "/usr/include/bits/pthreadtypes.h" 2 3 # 56 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; union pthread_attr_t { char __size[56]; long int __align; }; typedef union pthread_attr_t pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 86 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; short __spins; short __elision; __pthread_list_t __list; # 124 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 211 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 27 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/setjmp.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 27 "/usr/include/bits/setjmp.h" 2 3 typedef long int __jmp_buf[8]; # 28 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/pthread.h" 2 3 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 93 "/usr/include/pthread.h" 3 # 121 "/usr/include/pthread.h" 3 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 163 "/usr/include/pthread.h" 3 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; extern int pthread_create (pthread_t *__restrict __newthread, const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 277 "/usr/include/pthread.h" 3 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__ , __leaf__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__const__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, const struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 434 "/usr/include/pthread.h" 3 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, const struct sched_param *__param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__ , __leaf__)); # 465 "/usr/include/pthread.h" 3 # 474 "/usr/include/pthread.h" 3 # 494 "/usr/include/pthread.h" 3 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 668 "/usr/include/pthread.h" 3 # 691 "/usr/include/pthread.h" 3 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 703 "/usr/include/pthread.h" 3 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 742 "/usr/include/pthread.h" 3 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); # 892 "/usr/include/pthread.h" 3 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__ , __leaf__)); extern int pthread_setspecific (pthread_key_t __key, const void *__pointer) __attribute__ ((__nothrow__ , __leaf__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__ , __leaf__)) __attribute__ ((__nonnull__ (2))); extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__ , __leaf__)); extern __inline __attribute__ ((__gnu_inline__)) int __attribute__ ((__nothrow__ , __leaf__)) pthread_equal (pthread_t __thread1, pthread_t __thread2) { return __thread1 == __thread2; } # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Popping language C All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.c" 2 # 1 "/usr/include/sys/sysctl.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 127 "/usr/include/features.h" 3 # 147 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 192 "/usr/include/features.h" 3 # 246 "/usr/include/features.h" 3 # 270 "/usr/include/features.h" 3 # 302 "/usr/include/features.h" 3 # 353 "/usr/include/features.h" 3 # 1 "/usr/include/stdc-predef.h" 1 3 # 43 "/usr/include/stdc-predef.h" 3 # 51 "/usr/include/stdc-predef.h" 3 # 357 "/usr/include/features.h" 2 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 48 "/usr/include/sys/cdefs.h" 3 # 69 "/usr/include/sys/cdefs.h" 3 # 79 "/usr/include/sys/cdefs.h" 3 # 104 "/usr/include/sys/cdefs.h" 3 # 119 "/usr/include/sys/cdefs.h" 3 # 129 "/usr/include/sys/cdefs.h" 3 # 147 "/usr/include/sys/cdefs.h" 3 # 164 "/usr/include/sys/cdefs.h" 3 # 192 "/usr/include/sys/cdefs.h" 3 # 225 "/usr/include/sys/cdefs.h" 3 # 252 "/usr/include/sys/cdefs.h" 3 # 282 "/usr/include/sys/cdefs.h" 3 # 305 "/usr/include/sys/cdefs.h" 3 # 338 "/usr/include/sys/cdefs.h" 3 # 376 "/usr/include/sys/cdefs.h" 3 # 384 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 386 "/usr/include/sys/cdefs.h" 2 3 # 418 "/usr/include/sys/cdefs.h" 3 # 379 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 11 "/usr/include/gnu/stubs.h" 2 3 # 403 "/usr/include/features.h" 2 3 # 22 "/usr/include/sys/sysctl.h" 2 3 # 1 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 1 3 typedef long ptrdiff_t; # 44 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 typedef unsigned long size_t; typedef int wchar_t; # 76 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 83 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 99 "/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/include/stddef.h" 3 # 24 "/usr/include/sys/sysctl.h" 2 3 # 42 "/usr/include/sys/sysctl.h" 3 # 1 "/usr/include/linux/sysctl.h" 1 3 # 1 "/usr/include/linux/kernel.h" 1 3 # 26 "/usr/include/linux/sysctl.h" 2 3 # 1 "/usr/include/linux/types.h" 1 3 # 27 "/usr/include/linux/sysctl.h" 2 3 struct completion; struct __sysctl_args { int *name; int nlen; void *oldval; size_t *oldlenp; void *newval; size_t newlen; unsigned long __unused[4]; }; enum { CTL_KERN=1, CTL_VM=2, CTL_NET=3, CTL_PROC=4, CTL_FS=5, CTL_DEBUG=6, CTL_DEV=7, CTL_BUS=8, CTL_ABI=9, CTL_CPU=10, CTL_ARLAN=254, CTL_S390DBF=5677, CTL_SUNRPC=7249, CTL_PM=9899, CTL_FRV=9898, }; enum { CTL_BUS_ISA=1 }; enum { INOTIFY_MAX_USER_INSTANCES=1, INOTIFY_MAX_USER_WATCHES=2, INOTIFY_MAX_QUEUED_EVENTS=3 }; enum { KERN_OSTYPE=1, KERN_OSRELEASE=2, KERN_OSREV=3, KERN_VERSION=4, KERN_SECUREMASK=5, KERN_PROF=6, KERN_NODENAME=7, KERN_DOMAINNAME=8, KERN_PANIC=15, KERN_REALROOTDEV=16, KERN_SPARC_REBOOT=21, KERN_CTLALTDEL=22, KERN_PRINTK=23, KERN_NAMETRANS=24, KERN_PPC_HTABRECLAIM=25, KERN_PPC_ZEROPAGED=26, KERN_PPC_POWERSAVE_NAP=27, KERN_MODPROBE=28, KERN_SG_BIG_BUFF=29, KERN_ACCT=30, KERN_PPC_L2CR=31, KERN_RTSIGNR=32, KERN_RTSIGMAX=33, KERN_SHMMAX=34, KERN_MSGMAX=35, KERN_MSGMNB=36, KERN_MSGPOOL=37, KERN_SYSRQ=38, KERN_MAX_THREADS=39, KERN_RANDOM=40, KERN_SHMALL=41, KERN_MSGMNI=42, KERN_SEM=43, KERN_SPARC_STOP_A=44, KERN_SHMMNI=45, KERN_OVERFLOWUID=46, KERN_OVERFLOWGID=47, KERN_SHMPATH=48, KERN_HOTPLUG=49, KERN_IEEE_EMULATION_WARNINGS=50, KERN_S390_USER_DEBUG_LOGGING=51, KERN_CORE_USES_PID=52, KERN_TAINTED=53, KERN_CADPID=54, KERN_PIDMAX=55, KERN_CORE_PATTERN=56, KERN_PANIC_ON_OOPS=57, KERN_HPPA_PWRSW=58, KERN_HPPA_UNALIGNED=59, KERN_PRINTK_RATELIMIT=60, KERN_PRINTK_RATELIMIT_BURST=61, KERN_PTY=62, KERN_NGROUPS_MAX=63, KERN_SPARC_SCONS_PWROFF=64, KERN_HZ_TIMER=65, KERN_UNKNOWN_NMI_PANIC=66, KERN_BOOTLOADER_TYPE=67, KERN_RANDOMIZE=68, KERN_SETUID_DUMPABLE=69, KERN_SPIN_RETRY=70, KERN_ACPI_VIDEO_FLAGS=71, KERN_IA64_UNALIGNED=72, KERN_COMPAT_LOG=73, KERN_MAX_LOCK_DEPTH=74, KERN_NMI_WATCHDOG=75, KERN_PANIC_ON_NMI=76, }; enum { VM_UNUSED1=1, VM_UNUSED2=2, VM_UNUSED3=3, VM_UNUSED4=4, VM_OVERCOMMIT_MEMORY=5, VM_UNUSED5=6, VM_UNUSED7=7, VM_UNUSED8=8, VM_UNUSED9=9, VM_PAGE_CLUSTER=10, VM_DIRTY_BACKGROUND=11, VM_DIRTY_RATIO=12, VM_DIRTY_WB_CS=13, VM_DIRTY_EXPIRE_CS=14, VM_NR_PDFLUSH_THREADS=15, VM_OVERCOMMIT_RATIO=16, VM_PAGEBUF=17, VM_HUGETLB_PAGES=18, VM_SWAPPINESS=19, VM_LOWMEM_RESERVE_RATIO=20, VM_MIN_FREE_KBYTES=21, VM_MAX_MAP_COUNT=22, VM_LAPTOP_MODE=23, VM_BLOCK_DUMP=24, VM_HUGETLB_GROUP=25, VM_VFS_CACHE_PRESSURE=26, VM_LEGACY_VA_LAYOUT=27, VM_SWAP_TOKEN_TIMEOUT=28, VM_DROP_PAGECACHE=29, VM_PERCPU_PAGELIST_FRACTION=30, VM_ZONE_RECLAIM_MODE=31, VM_MIN_UNMAPPED=32, VM_PANIC_ON_OOM=33, VM_VDSO_ENABLED=34, VM_MIN_SLAB=35, }; enum { NET_CORE=1, NET_ETHER=2, NET_802=3, NET_UNIX=4, NET_IPV4=5, NET_IPX=6, NET_ATALK=7, NET_NETROM=8, NET_AX25=9, NET_BRIDGE=10, NET_ROSE=11, NET_IPV6=12, NET_X25=13, NET_TR=14, NET_DECNET=15, NET_ECONET=16, NET_SCTP=17, NET_LLC=18, NET_NETFILTER=19, NET_DCCP=20, NET_IRDA=412, }; enum { RANDOM_POOLSIZE=1, RANDOM_ENTROPY_COUNT=2, RANDOM_READ_THRESH=3, RANDOM_WRITE_THRESH=4, RANDOM_BOOT_ID=5, RANDOM_UUID=6 }; enum { PTY_MAX=1, PTY_NR=2 }; enum { BUS_ISA_MEM_BASE=1, BUS_ISA_PORT_BASE=2, BUS_ISA_PORT_SHIFT=3 }; enum { NET_CORE_WMEM_MAX=1, NET_CORE_RMEM_MAX=2, NET_CORE_WMEM_DEFAULT=3, NET_CORE_RMEM_DEFAULT=4, NET_CORE_MAX_BACKLOG=6, NET_CORE_FASTROUTE=7, NET_CORE_MSG_COST=8, NET_CORE_MSG_BURST=9, NET_CORE_OPTMEM_MAX=10, NET_CORE_HOT_LIST_LENGTH=11, NET_CORE_DIVERT_VERSION=12, NET_CORE_NO_CONG_THRESH=13, NET_CORE_NO_CONG=14, NET_CORE_LO_CONG=15, NET_CORE_MOD_CONG=16, NET_CORE_DEV_WEIGHT=17, NET_CORE_SOMAXCONN=18, NET_CORE_BUDGET=19, NET_CORE_AEVENT_ETIME=20, NET_CORE_AEVENT_RSEQTH=21, NET_CORE_WARNINGS=22, }; enum { NET_UNIX_DESTROY_DELAY=1, NET_UNIX_DELETE_DELAY=2, NET_UNIX_MAX_DGRAM_QLEN=3, }; enum { NET_NF_CONNTRACK_MAX=1, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_NF_CONNTRACK_UDP_TIMEOUT=10, NET_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_NF_CONNTRACK_BUCKETS=14, NET_NF_CONNTRACK_LOG_INVALID=15, NET_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_NF_CONNTRACK_TCP_LOOSE=17, NET_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_NF_CONNTRACK_COUNT=27, NET_NF_CONNTRACK_ICMPV6_TIMEOUT=28, NET_NF_CONNTRACK_FRAG6_TIMEOUT=29, NET_NF_CONNTRACK_FRAG6_LOW_THRESH=30, NET_NF_CONNTRACK_FRAG6_HIGH_THRESH=31, NET_NF_CONNTRACK_CHECKSUM=32, }; enum { NET_IPV4_FORWARD=8, NET_IPV4_DYNADDR=9, NET_IPV4_CONF=16, NET_IPV4_NEIGH=17, NET_IPV4_ROUTE=18, NET_IPV4_FIB_HASH=19, NET_IPV4_NETFILTER=20, NET_IPV4_TCP_TIMESTAMPS=33, NET_IPV4_TCP_WINDOW_SCALING=34, NET_IPV4_TCP_SACK=35, NET_IPV4_TCP_RETRANS_COLLAPSE=36, NET_IPV4_DEFAULT_TTL=37, NET_IPV4_AUTOCONFIG=38, NET_IPV4_NO_PMTU_DISC=39, NET_IPV4_TCP_SYN_RETRIES=40, NET_IPV4_IPFRAG_HIGH_THRESH=41, NET_IPV4_IPFRAG_LOW_THRESH=42, NET_IPV4_IPFRAG_TIME=43, NET_IPV4_TCP_MAX_KA_PROBES=44, NET_IPV4_TCP_KEEPALIVE_TIME=45, NET_IPV4_TCP_KEEPALIVE_PROBES=46, NET_IPV4_TCP_RETRIES1=47, NET_IPV4_TCP_RETRIES2=48, NET_IPV4_TCP_FIN_TIMEOUT=49, NET_IPV4_IP_MASQ_DEBUG=50, NET_TCP_SYNCOOKIES=51, NET_TCP_STDURG=52, NET_TCP_RFC1337=53, NET_TCP_SYN_TAILDROP=54, NET_TCP_MAX_SYN_BACKLOG=55, NET_IPV4_LOCAL_PORT_RANGE=56, NET_IPV4_ICMP_ECHO_IGNORE_ALL=57, NET_IPV4_ICMP_ECHO_IGNORE_BROADCASTS=58, NET_IPV4_ICMP_SOURCEQUENCH_RATE=59, NET_IPV4_ICMP_DESTUNREACH_RATE=60, NET_IPV4_ICMP_TIMEEXCEED_RATE=61, NET_IPV4_ICMP_PARAMPROB_RATE=62, NET_IPV4_ICMP_ECHOREPLY_RATE=63, NET_IPV4_ICMP_IGNORE_BOGUS_ERROR_RESPONSES=64, NET_IPV4_IGMP_MAX_MEMBERSHIPS=65, NET_TCP_TW_RECYCLE=66, NET_IPV4_ALWAYS_DEFRAG=67, NET_IPV4_TCP_KEEPALIVE_INTVL=68, NET_IPV4_INET_PEER_THRESHOLD=69, NET_IPV4_INET_PEER_MINTTL=70, NET_IPV4_INET_PEER_MAXTTL=71, NET_IPV4_INET_PEER_GC_MINTIME=72, NET_IPV4_INET_PEER_GC_MAXTIME=73, NET_TCP_ORPHAN_RETRIES=74, NET_TCP_ABORT_ON_OVERFLOW=75, NET_TCP_SYNACK_RETRIES=76, NET_TCP_MAX_ORPHANS=77, NET_TCP_MAX_TW_BUCKETS=78, NET_TCP_FACK=79, NET_TCP_REORDERING=80, NET_TCP_ECN=81, NET_TCP_DSACK=82, NET_TCP_MEM=83, NET_TCP_WMEM=84, NET_TCP_RMEM=85, NET_TCP_APP_WIN=86, NET_TCP_ADV_WIN_SCALE=87, NET_IPV4_NONLOCAL_BIND=88, NET_IPV4_ICMP_RATELIMIT=89, NET_IPV4_ICMP_RATEMASK=90, NET_TCP_TW_REUSE=91, NET_TCP_FRTO=92, NET_TCP_LOW_LATENCY=93, NET_IPV4_IPFRAG_SECRET_INTERVAL=94, NET_IPV4_IGMP_MAX_MSF=96, NET_TCP_NO_METRICS_SAVE=97, NET_TCP_DEFAULT_WIN_SCALE=105, NET_TCP_MODERATE_RCVBUF=106, NET_TCP_TSO_WIN_DIVISOR=107, NET_TCP_BIC_BETA=108, NET_IPV4_ICMP_ERRORS_USE_INBOUND_IFADDR=109, NET_TCP_CONG_CONTROL=110, NET_TCP_ABC=111, NET_IPV4_IPFRAG_MAX_DIST=112, NET_TCP_MTU_PROBING=113, NET_TCP_BASE_MSS=114, NET_IPV4_TCP_WORKAROUND_SIGNED_WINDOWS=115, NET_TCP_DMA_COPYBREAK=116, NET_TCP_SLOW_START_AFTER_IDLE=117, NET_CIPSOV4_CACHE_ENABLE=118, NET_CIPSOV4_CACHE_BUCKET_SIZE=119, NET_CIPSOV4_RBM_OPTFMT=120, NET_CIPSOV4_RBM_STRICTVALID=121, NET_TCP_AVAIL_CONG_CONTROL=122, NET_TCP_ALLOWED_CONG_CONTROL=123, NET_TCP_MAX_SSTHRESH=124, NET_TCP_FRTO_RESPONSE=125, }; enum { NET_IPV4_ROUTE_FLUSH=1, NET_IPV4_ROUTE_MIN_DELAY=2, NET_IPV4_ROUTE_MAX_DELAY=3, NET_IPV4_ROUTE_GC_THRESH=4, NET_IPV4_ROUTE_MAX_SIZE=5, NET_IPV4_ROUTE_GC_MIN_INTERVAL=6, NET_IPV4_ROUTE_GC_TIMEOUT=7, NET_IPV4_ROUTE_GC_INTERVAL=8, NET_IPV4_ROUTE_REDIRECT_LOAD=9, NET_IPV4_ROUTE_REDIRECT_NUMBER=10, NET_IPV4_ROUTE_REDIRECT_SILENCE=11, NET_IPV4_ROUTE_ERROR_COST=12, NET_IPV4_ROUTE_ERROR_BURST=13, NET_IPV4_ROUTE_GC_ELASTICITY=14, NET_IPV4_ROUTE_MTU_EXPIRES=15, NET_IPV4_ROUTE_MIN_PMTU=16, NET_IPV4_ROUTE_MIN_ADVMSS=17, NET_IPV4_ROUTE_SECRET_INTERVAL=18, NET_IPV4_ROUTE_GC_MIN_INTERVAL_MS=19, }; enum { NET_PROTO_CONF_ALL=-2, NET_PROTO_CONF_DEFAULT=-3 }; enum { NET_IPV4_CONF_FORWARDING=1, NET_IPV4_CONF_MC_FORWARDING=2, NET_IPV4_CONF_PROXY_ARP=3, NET_IPV4_CONF_ACCEPT_REDIRECTS=4, NET_IPV4_CONF_SECURE_REDIRECTS=5, NET_IPV4_CONF_SEND_REDIRECTS=6, NET_IPV4_CONF_SHARED_MEDIA=7, NET_IPV4_CONF_RP_FILTER=8, NET_IPV4_CONF_ACCEPT_SOURCE_ROUTE=9, NET_IPV4_CONF_BOOTP_RELAY=10, NET_IPV4_CONF_LOG_MARTIANS=11, NET_IPV4_CONF_TAG=12, NET_IPV4_CONF_ARPFILTER=13, NET_IPV4_CONF_MEDIUM_ID=14, NET_IPV4_CONF_NOXFRM=15, NET_IPV4_CONF_NOPOLICY=16, NET_IPV4_CONF_FORCE_IGMP_VERSION=17, NET_IPV4_CONF_ARP_ANNOUNCE=18, NET_IPV4_CONF_ARP_IGNORE=19, NET_IPV4_CONF_PROMOTE_SECONDARIES=20, NET_IPV4_CONF_ARP_ACCEPT=21, NET_IPV4_CONF_ARP_NOTIFY=22, }; enum { NET_IPV4_NF_CONNTRACK_MAX=1, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT=10, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_IPV4_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_IPV4_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_IPV4_NF_CONNTRACK_BUCKETS=14, NET_IPV4_NF_CONNTRACK_LOG_INVALID=15, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_IPV4_NF_CONNTRACK_TCP_LOOSE=17, NET_IPV4_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_IPV4_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_IPV4_NF_CONNTRACK_COUNT=27, NET_IPV4_NF_CONNTRACK_CHECKSUM=28, }; enum { NET_IPV6_CONF=16, NET_IPV6_NEIGH=17, NET_IPV6_ROUTE=18, NET_IPV6_ICMP=19, NET_IPV6_BINDV6ONLY=20, NET_IPV6_IP6FRAG_HIGH_THRESH=21, NET_IPV6_IP6FRAG_LOW_THRESH=22, NET_IPV6_IP6FRAG_TIME=23, NET_IPV6_IP6FRAG_SECRET_INTERVAL=24, NET_IPV6_MLD_MAX_MSF=25, }; enum { NET_IPV6_ROUTE_FLUSH=1, NET_IPV6_ROUTE_GC_THRESH=2, NET_IPV6_ROUTE_MAX_SIZE=3, NET_IPV6_ROUTE_GC_MIN_INTERVAL=4, NET_IPV6_ROUTE_GC_TIMEOUT=5, NET_IPV6_ROUTE_GC_INTERVAL=6, NET_IPV6_ROUTE_GC_ELASTICITY=7, NET_IPV6_ROUTE_MTU_EXPIRES=8, NET_IPV6_ROUTE_MIN_ADVMSS=9, NET_IPV6_ROUTE_GC_MIN_INTERVAL_MS=10 }; enum { NET_IPV6_FORWARDING=1, NET_IPV6_HOP_LIMIT=2, NET_IPV6_MTU=3, NET_IPV6_ACCEPT_RA=4, NET_IPV6_ACCEPT_REDIRECTS=5, NET_IPV6_AUTOCONF=6, NET_IPV6_DAD_TRANSMITS=7, NET_IPV6_RTR_SOLICITS=8, NET_IPV6_RTR_SOLICIT_INTERVAL=9, NET_IPV6_RTR_SOLICIT_DELAY=10, NET_IPV6_USE_TEMPADDR=11, NET_IPV6_TEMP_VALID_LFT=12, NET_IPV6_TEMP_PREFERED_LFT=13, NET_IPV6_REGEN_MAX_RETRY=14, NET_IPV6_MAX_DESYNC_FACTOR=15, NET_IPV6_MAX_ADDRESSES=16, NET_IPV6_FORCE_MLD_VERSION=17, NET_IPV6_ACCEPT_RA_DEFRTR=18, NET_IPV6_ACCEPT_RA_PINFO=19, NET_IPV6_ACCEPT_RA_RTR_PREF=20, NET_IPV6_RTR_PROBE_INTERVAL=21, NET_IPV6_ACCEPT_RA_RT_INFO_MAX_PLEN=22, NET_IPV6_PROXY_NDP=23, NET_IPV6_ACCEPT_SOURCE_ROUTE=25, __NET_IPV6_MAX }; enum { NET_IPV6_ICMP_RATELIMIT=1 }; enum { NET_NEIGH_MCAST_SOLICIT=1, NET_NEIGH_UCAST_SOLICIT=2, NET_NEIGH_APP_SOLICIT=3, NET_NEIGH_RETRANS_TIME=4, NET_NEIGH_REACHABLE_TIME=5, NET_NEIGH_DELAY_PROBE_TIME=6, NET_NEIGH_GC_STALE_TIME=7, NET_NEIGH_UNRES_QLEN=8, NET_NEIGH_PROXY_QLEN=9, NET_NEIGH_ANYCAST_DELAY=10, NET_NEIGH_PROXY_DELAY=11, NET_NEIGH_LOCKTIME=12, NET_NEIGH_GC_INTERVAL=13, NET_NEIGH_GC_THRESH1=14, NET_NEIGH_GC_THRESH2=15, NET_NEIGH_GC_THRESH3=16, NET_NEIGH_RETRANS_TIME_MS=17, NET_NEIGH_REACHABLE_TIME_MS=18, }; enum { NET_DCCP_DEFAULT=1, }; enum { NET_IPX_PPROP_BROADCASTING=1, NET_IPX_FORWARDING=2 }; enum { NET_LLC2=1, NET_LLC_STATION=2, }; enum { NET_LLC2_TIMEOUT=1, }; enum { NET_LLC_STATION_ACK_TIMEOUT=1, }; enum { NET_LLC2_ACK_TIMEOUT=1, NET_LLC2_P_TIMEOUT=2, NET_LLC2_REJ_TIMEOUT=3, NET_LLC2_BUSY_TIMEOUT=4, }; enum { NET_ATALK_AARP_EXPIRY_TIME=1, NET_ATALK_AARP_TICK_TIME=2, NET_ATALK_AARP_RETRANSMIT_LIMIT=3, NET_ATALK_AARP_RESOLVE_TIME=4 }; enum { NET_NETROM_DEFAULT_PATH_QUALITY=1, NET_NETROM_OBSOLESCENCE_COUNT_INITIALISER=2, NET_NETROM_NETWORK_TTL_INITIALISER=3, NET_NETROM_TRANSPORT_TIMEOUT=4, NET_NETROM_TRANSPORT_MAXIMUM_TRIES=5, NET_NETROM_TRANSPORT_ACKNOWLEDGE_DELAY=6, NET_NETROM_TRANSPORT_BUSY_DELAY=7, NET_NETROM_TRANSPORT_REQUESTED_WINDOW_SIZE=8, NET_NETROM_TRANSPORT_NO_ACTIVITY_TIMEOUT=9, NET_NETROM_ROUTING_CONTROL=10, NET_NETROM_LINK_FAILS_COUNT=11, NET_NETROM_RESET=12 }; enum { NET_AX25_IP_DEFAULT_MODE=1, NET_AX25_DEFAULT_MODE=2, NET_AX25_BACKOFF_TYPE=3, NET_AX25_CONNECT_MODE=4, NET_AX25_STANDARD_WINDOW=5, NET_AX25_EXTENDED_WINDOW=6, NET_AX25_T1_TIMEOUT=7, NET_AX25_T2_TIMEOUT=8, NET_AX25_T3_TIMEOUT=9, NET_AX25_IDLE_TIMEOUT=10, NET_AX25_N2=11, NET_AX25_PACLEN=12, NET_AX25_PROTOCOL=13, NET_AX25_DAMA_SLAVE_TIMEOUT=14 }; enum { NET_ROSE_RESTART_REQUEST_TIMEOUT=1, NET_ROSE_CALL_REQUEST_TIMEOUT=2, NET_ROSE_RESET_REQUEST_TIMEOUT=3, NET_ROSE_CLEAR_REQUEST_TIMEOUT=4, NET_ROSE_ACK_HOLD_BACK_TIMEOUT=5, NET_ROSE_ROUTING_CONTROL=6, NET_ROSE_LINK_FAIL_TIMEOUT=7, NET_ROSE_MAX_VCS=8, NET_ROSE_WINDOW_SIZE=9, NET_ROSE_NO_ACTIVITY_TIMEOUT=10 }; enum { NET_X25_RESTART_REQUEST_TIMEOUT=1, NET_X25_CALL_REQUEST_TIMEOUT=2, NET_X25_RESET_REQUEST_TIMEOUT=3, NET_X25_CLEAR_REQUEST_TIMEOUT=4, NET_X25_ACK_HOLD_BACK_TIMEOUT=5, NET_X25_FORWARD=6 }; enum { NET_TR_RIF_TIMEOUT=1 }; enum { NET_DECNET_NODE_TYPE = 1, NET_DECNET_NODE_ADDRESS = 2, NET_DECNET_NODE_NAME = 3, NET_DECNET_DEFAULT_DEVICE = 4, NET_DECNET_TIME_WAIT = 5, NET_DECNET_DN_COUNT = 6, NET_DECNET_DI_COUNT = 7, NET_DECNET_DR_COUNT = 8, NET_DECNET_DST_GC_INTERVAL = 9, NET_DECNET_CONF = 10, NET_DECNET_NO_FC_MAX_CWND = 11, NET_DECNET_MEM = 12, NET_DECNET_RMEM = 13, NET_DECNET_WMEM = 14, NET_DECNET_DEBUG_LEVEL = 255 }; enum { NET_DECNET_CONF_LOOPBACK = -2, NET_DECNET_CONF_DDCMP = -3, NET_DECNET_CONF_PPP = -4, NET_DECNET_CONF_X25 = -5, NET_DECNET_CONF_GRE = -6, NET_DECNET_CONF_ETHER = -7 }; enum { NET_DECNET_CONF_DEV_PRIORITY = 1, NET_DECNET_CONF_DEV_T1 = 2, NET_DECNET_CONF_DEV_T2 = 3, NET_DECNET_CONF_DEV_T3 = 4, NET_DECNET_CONF_DEV_FORWARDING = 5, NET_DECNET_CONF_DEV_BLKSIZE = 6, NET_DECNET_CONF_DEV_STATE = 7 }; enum { NET_SCTP_RTO_INITIAL = 1, NET_SCTP_RTO_MIN = 2, NET_SCTP_RTO_MAX = 3, NET_SCTP_RTO_ALPHA = 4, NET_SCTP_RTO_BETA = 5, NET_SCTP_VALID_COOKIE_LIFE = 6, NET_SCTP_ASSOCIATION_MAX_RETRANS = 7, NET_SCTP_PATH_MAX_RETRANS = 8, NET_SCTP_MAX_INIT_RETRANSMITS = 9, NET_SCTP_HB_INTERVAL = 10, NET_SCTP_PRESERVE_ENABLE = 11, NET_SCTP_MAX_BURST = 12, NET_SCTP_ADDIP_ENABLE = 13, NET_SCTP_PRSCTP_ENABLE = 14, NET_SCTP_SNDBUF_POLICY = 15, NET_SCTP_SACK_TIMEOUT = 16, NET_SCTP_RCVBUF_POLICY = 17, }; enum { NET_BRIDGE_NF_CALL_ARPTABLES = 1, NET_BRIDGE_NF_CALL_IPTABLES = 2, NET_BRIDGE_NF_CALL_IP6TABLES = 3, NET_BRIDGE_NF_FILTER_VLAN_TAGGED = 4, NET_BRIDGE_NF_FILTER_PPPOE_TAGGED = 5, }; enum { NET_IRDA_DISCOVERY=1, NET_IRDA_DEVNAME=2, NET_IRDA_DEBUG=3, NET_IRDA_FAST_POLL=4, NET_IRDA_DISCOVERY_SLOTS=5, NET_IRDA_DISCOVERY_TIMEOUT=6, NET_IRDA_SLOT_TIMEOUT=7, NET_IRDA_MAX_BAUD_RATE=8, NET_IRDA_MIN_TX_TURN_TIME=9, NET_IRDA_MAX_TX_DATA_SIZE=10, NET_IRDA_MAX_TX_WINDOW=11, NET_IRDA_MAX_NOREPLY_TIME=12, NET_IRDA_WARN_NOREPLY_TIME=13, NET_IRDA_LAP_KEEPALIVE_TIME=14, }; enum { FS_NRINODE=1, FS_STATINODE=2, FS_MAXINODE=3, FS_NRDQUOT=4, FS_MAXDQUOT=5, FS_NRFILE=6, FS_MAXFILE=7, FS_DENTRY=8, FS_NRSUPER=9, FS_MAXSUPER=10, FS_OVERFLOWUID=11, FS_OVERFLOWGID=12, FS_LEASES=13, FS_DIR_NOTIFY=14, FS_LEASE_TIME=15, FS_DQSTATS=16, FS_XFS=17, FS_AIO_NR=18, FS_AIO_MAX_NR=19, FS_INOTIFY=20, FS_OCFS2=988, }; enum { FS_DQ_LOOKUPS = 1, FS_DQ_DROPS = 2, FS_DQ_READS = 3, FS_DQ_WRITES = 4, FS_DQ_CACHE_HITS = 5, FS_DQ_ALLOCATED = 6, FS_DQ_FREE = 7, FS_DQ_SYNCS = 8, FS_DQ_WARNINGS = 9, }; enum { DEV_CDROM=1, DEV_HWMON=2, DEV_PARPORT=3, DEV_RAID=4, DEV_MAC_HID=5, DEV_SCSI=6, DEV_IPMI=7, }; enum { DEV_CDROM_INFO=1, DEV_CDROM_AUTOCLOSE=2, DEV_CDROM_AUTOEJECT=3, DEV_CDROM_DEBUG=4, DEV_CDROM_LOCK=5, DEV_CDROM_CHECK_MEDIA=6 }; enum { DEV_PARPORT_DEFAULT=-3 }; enum { DEV_RAID_SPEED_LIMIT_MIN=1, DEV_RAID_SPEED_LIMIT_MAX=2 }; enum { DEV_PARPORT_DEFAULT_TIMESLICE=1, DEV_PARPORT_DEFAULT_SPINTIME=2 }; enum { DEV_PARPORT_SPINTIME=1, DEV_PARPORT_BASE_ADDR=2, DEV_PARPORT_IRQ=3, DEV_PARPORT_DMA=4, DEV_PARPORT_MODES=5, DEV_PARPORT_DEVICES=6, DEV_PARPORT_AUTOPROBE=16 }; enum { DEV_PARPORT_DEVICES_ACTIVE=-3, }; enum { DEV_PARPORT_DEVICE_TIMESLICE=1, }; enum { DEV_MAC_HID_KEYBOARD_SENDS_LINUX_KEYCODES=1, DEV_MAC_HID_KEYBOARD_LOCK_KEYCODES=2, DEV_MAC_HID_MOUSE_BUTTON_EMULATION=3, DEV_MAC_HID_MOUSE_BUTTON2_KEYCODE=4, DEV_MAC_HID_MOUSE_BUTTON3_KEYCODE=5, DEV_MAC_HID_ADB_MOUSE_SENDS_KEYCODES=6 }; enum { DEV_SCSI_LOGGING_LEVEL=1, }; enum { DEV_IPMI_POWEROFF_POWERCYCLE=1, }; enum { ABI_DEFHANDLER_COFF=1, ABI_DEFHANDLER_ELF=2, ABI_DEFHANDLER_LCALL7=3, ABI_DEFHANDLER_LIBCSO=4, ABI_TRACE=5, ABI_FAKE_UTSNAME=6, }; # 44 "/usr/include/sys/sysctl.h" 2 3 # 62 "/usr/include/sys/sysctl.h" 3 # 1 "/usr/include/bits/sysctl.h" 1 3 # 64 "/usr/include/sys/sysctl.h" 2 3 extern int sysctl (int *__name, int __nlen, void *__oldval, size_t *__oldlenp, void *__newval, size_t __newlen) __attribute__ ((__nothrow__ , __leaf__)); # 4 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:731) TESTING: checkSharedLibrary from config.packages.pthread(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:731) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.giflib(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.giflib(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Not a clone of PETSc, don't need Lgrind ================================================================================ TEST alternateConfigureLibrary from config.packages.revolve(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.revolve(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ssl(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.ssl(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.fftw(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.ctetgen(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.tchem(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.X(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.X(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Triangle(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.Triangle(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.boost(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.openmp(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.PTScotch(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.hwloc(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:672) TESTING: configureLibrary from config.packages.hwloc(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:672) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional hwloc Checking for library in Compiler specific search HWLOC: [] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library [] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o: In function `main': conftest.c:(.text+0x32): undefined reference to `hwloc_topology_init' Popping language C Checking for library in Compiler specific search HWLOC: ['libhwloc.a'] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -lhwloc -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language C Checking for library in Compiler specific search HWLOC: ['libhwloc.a', 'libxml2.a'] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -lhwloc -lxml2 -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc ld: cannot find -lxml2 Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a'] Contents: ['lib', 'sbin', 'bin', 'include', 'lib64', 'share', 'man', 'games', 'src'] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a', 'libxml2.a'] Contents: ['lib', 'sbin', 'bin', 'include', 'lib64', 'share', 'man', 'games', 'src'] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -lxml2 -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc ld: cannot find -lxml2 Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib64/libhwloc.a'] Contents: ['lib', 'sbin', 'bin', 'include', 'lib64', 'share', 'man', 'games', 'src'] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib64/libhwloc.a'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lhwloc -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib64/libhwloc.a', 'libxml2.a'] Contents: ['lib', 'sbin', 'bin', 'include', 'lib64', 'share', 'man', 'games', 'src'] ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib64/libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -c -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.closure -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.compilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.cacheDetails -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.atomics -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.featureTestMacros -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.functions -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.utilities.missing -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /opt/cray/pe/craype/2.5.5/bin/cc -o /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest -O /global/cscratch1/sd/gpau/petsc-ffbsUg/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lhwloc -lxml2 -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/usr/x86_64-suse-linux/lib -lmpichcxx_intel -lstdc++ -ldl -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lpthread -lsma -lpmi -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lrt -lugni -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -lAtpSigHandler -lAtpSigHCommData -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -limf -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -lifcore -lifport -lsvml -lirng -lipgo -ldecimal -lgcc_eh -lirc -lirc_s -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/x86_64-suse-linux/lib -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc ld: cannot find -lxml2 Popping language C HWLOC: SearchDir DirPath not found.. skipping: /opt/local ================================================================================ TEST checkSharedLibrary from config.packages.hwloc(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:731) TESTING: checkSharedLibrary from config.packages.hwloc(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:731) By default we don't care about checking if the library is shared Popping language C Pushing language C ================================================================================ TEST configureLibrary from config.packages.valgrind(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:672) TESTING: configureLibrary from config.packages.valgrind(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:672) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Compiler specific search VALGRIND: ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include -I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/alps/6.1.3-17.12/include -I/opt/cray/xpmem/0.1-4.5/include -I/opt/cray/gni-headers/5.0.7-3.1/include -I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include -I/opt/cray/ugni/6.0.12-2.1/include -I/opt/cray/udreg/2.3.2-4.6/include -I/opt/cray/wlm_detect/1.1.0-4.2/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include', '/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/usr/local/include -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include -I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/alps/6.1.3-17.12/include -I/opt/cray/xpmem/0.1-4.5/include -I/opt/cray/gni-headers/5.0.7-3.1/include -I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include -I/opt/cray/ugni/6.0.12-2.1/include -I/opt/cray/udreg/2.3.2-4.6/include -I/opt/cray/wlm_detect/1.1.0-4.2/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include', '/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include', '/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include', '/opt/cray/rca/1.0.0-6.21/include', '/opt/cray/alps/6.1.3-17.12/include', '/opt/cray/xpmem/0.1-4.5/include', '/opt/cray/gni-headers/5.0.7-3.1/include', '/opt/cray/dmapp/7.1.0-12.37/include', '/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include', '/opt/cray/ugni/6.0.12-2.1/include', '/opt/cray/udreg/2.3.2-4.6/include', '/opt/cray/wlm_detect/1.1.0-4.2/include', '/opt/cray/krca/1.0.0-3.55/include', '/opt/cray-hss-devel/8.0.0/include'] Executing: /opt/cray/pe/craype/2.5.5/bin/cc -E -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.setCompilers -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.types -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.MPI -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.pthread -I/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers -I/usr/local/include -I/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/include -I/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/include -I/opt/cray/rca/1.0.0-6.21/include -I/opt/cray/alps/6.1.3-17.12/include -I/opt/cray/xpmem/0.1-4.5/include -I/opt/cray/gni-headers/5.0.7-3.1/include -I/opt/cray/dmapp/7.1.0-12.37/include -I/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/include -I/opt/cray/ugni/6.0.12-2.1/include -I/opt/cray/udreg/2.3.2-4.6/include -I/opt/cray/wlm_detect/1.1.0-4.2/include -I/opt/cray/krca/1.0.0-3.55/include -I/opt/cray-hss-devel/8.0.0/include /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/confdefs.h" 1 # 2 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2 # 1 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conffix.h" 1 # 3 "/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c" 2stderr: /global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering:/global/cscratch1/sd/gpau/petsc-ffbsUg/config.headers/conftest.c(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Popping language C VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Linux =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.papi(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.papi(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST locateC2html from config.packages.c2html(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/c2html.py:33) TESTING: locateC2html from config.packages.c2html(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/c2html.py:33) Looking for default C2html executable Checking for program /usr/common/software/mercurial/3.8.3/bin/c2html...not found Checking for program /usr/common/software/cmake/3.3.2//bin/c2html...not found Checking for program /usr/common/software/darshan/3.0.1/bin/c2html...not found Checking for program /usr/common/usg/bin/c2html...not found Checking for program /usr/common/mss/bin/c2html...not found Checking for program /usr/common/nsg/bin/c2html...not found Checking for program /opt/cray/pe/mpt/7.4.0/gni/bin/c2html...not found Checking for program /opt/cray/rca/1.0.0-6.21/bin/c2html...not found Checking for program /opt/cray/alps/6.1.3-17.12/sbin/c2html...not found Checking for program /opt/cray/job/1.5.5-3.58/bin/c2html...not found Checking for program /opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/bin/c2html...not found Checking for program /opt/cray/pe/craype/2.5.5/bin/c2html...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/bin/intel64/c2html...not found Checking for program /opt/intel/compilers_and_libraries_2016.3.210/linux/mpi/intel64/bin/c2html...not found Checking for program /opt/intel/debugger_2016/gdb/intel64_mic/bin/c2html...not found Checking for program /opt/cray/pe/modules/3.2.10.4/bin/c2html...not found Checking for program /usr/syscom/nsg/sbin/c2html...not found Checking for program /usr/syscom/nsg/bin/c2html...not found Checking for program /opt/modules/3.2.6.7/bin/c2html...not found Checking for program /global/homes/g/gpau/bin/c2html...not found Checking for program /usr/local/bin/c2html...not found Checking for program /usr/bin/c2html...not found Checking for program /bin/c2html...not found Checking for program /usr/bin/X11/c2html...not found Checking for program /usr/games/c2html...not found Checking for program /usr/lib/mit/bin/c2html...not found Checking for program /usr/lib/mit/sbin/c2html...not found Checking for program /opt/cray/pe/bin/c2html...not found Checking for program /global/homes/g/gpau/c2html...not found Checking for program /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/bin/win32fe/c2html...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.Mathematica(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.scientificpython(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.fiat(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.cgns(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.yaml(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.libpng(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) TESTING: alternateConfigureLibrary from config.packages.libpng(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py:735) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.hdf5(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/hdf5.py:46) TESTING: configureLibrary from config.packages.hdf5(/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/hdf5.py:46) ================================================================================== Checking for a functional hdf5 Looking for HDF5 at git.hdf5, hg.hdf5 or a directory starting with hdf5 Could not locate an existing copy of HDF5: [] Downloading hdf5 =============================================================================== Trying to download http://www.hdfgroup.org/ftp/HDF5/prev-releases/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz for HDF5 =============================================================================== Downloading http://www.hdfgroup.org/ftp/HDF5/prev-releases/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz to /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/_d_hdf5-1.8.12.tar.gz Extracting /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/_d_hdf5-1.8.12.tar.gz Executing: cd /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages; chmod -R a+r hdf5-1.8.12;find hdf5-1.8.12 -type d -name "*" -exec chmod a+rx {} \; Looking for HDF5 at git.hdf5, hg.hdf5 or a directory starting with hdf5 Found a copy of HDF5 in hdf5-1.8.12 Pushing language C All intermediate test results are stored in /global/cscratch1/sd/gpau/petsc-ffbsUg/config.packages.hdf5 Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Executing: /opt/cray/pe/craype/2.5.5/bin/ftn -v Popping language FC Pushing language FC Popping language FC Have to rebuild HDF5, /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hdf5.petscconf != /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/lib/petsc/conf/pkg.conf.hdf5 =============================================================================== Running configure on HDF5; this may take several minutes =============================================================================== Executing: cd /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12 && ./configure --prefix=/global/cscratch1/sd/gpau/tough3/tough3-install/tpls MAKE=/usr/bin/gmake --libdir=/global/cscratch1/sd/gpau/tough3/tough3-install/tpls/lib CC="/opt/cray/pe/craype/2.5.5/bin/cc" CFLAGS="-O" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/opt/cray/pe/craype/2.5.5/bin/CC" CXXFLAGS="-O" F90="/opt/cray/pe/craype/2.5.5/bin/ftn" F90FLAGS="-O" F77="/opt/cray/pe/craype/2.5.5/bin/ftn" FFLAGS="-O" FC="/opt/cray/pe/craype/2.5.5/bin/ftn" FCFLAGS="-O" --disable-shared --enable-parallel --enable-fortran F9X="/opt/cray/pe/craype/2.5.5/bin/ftn" stdout: checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether /usr/bin/gmake sets $(MAKE)... yes checking whether /usr/bin/gmake supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config x86_64-unknown-linux-gnu... no checking for config x86_64-unknown-linux-gnu... no checking for config unknown-linux-gnu... no checking for config unknown-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-linux-gnu... no checking for config x86_64-unknown... no checking for config linux-gnu... found compiler '/opt/cray/pe/craype/2.5.5/bin/cc' is Intel icc-16.0.3.210 CC_BASENAME is cc. compiler '/opt/cray/pe/craype/2.5.5/bin/ftn' is Intel ifort-16.0.3.210 No match to get cc_version_info for /opt/cray/pe/craype/2.5.5/bin/cc No match to get fc_version_info for /opt/cray/pe/craype/2.5.5/bin/ftn No match to get cxx_version_info for /opt/cray/pe/craype/2.5.5/bin/CC checking for config ./config/site-specific/host-cori05... no checking for gcc... /opt/cray/pe/craype/2.5.5/bin/cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /opt/cray/pe/craype/2.5.5/bin/cc accepts -g... yes checking for /opt/cray/pe/craype/2.5.5/bin/cc option to accept ISO C89... none needed checking for style of include used by /usr/bin/gmake... GNU checking dependency style of /opt/cray/pe/craype/2.5.5/bin/cc... gcc3 checking if unsupported combinations of configure options are allowed... no checking if Fortran interface enabled... yes checking if Fortran 2003 interface enabled... yes checking whether we are using the GNU Fortran compiler... no checking whether /opt/cray/pe/craype/2.5.5/bin/ftn accepts -g... yes checking for Fortran flag to compile .f90 files... none checking whether we are using the GNU Fortran compiler... (cached) no checking whether /opt/cray/pe/craype/2.5.5/bin/ftn accepts -g... (cached) yes checking what /opt/cray/pe/craype/2.5.5/bin/ftn does with modules... module.mod checking how /opt/cray/pe/craype/2.5.5/bin/ftn finds modules... -I checking how to get verbose linking output from /opt/cray/pe/craype/2.5.5/bin/ftn... -v checking for Fortran libraries of /opt/cray/pe/craype/2.5.5/bin/ftn... -L/opt/cray/pe/mpt/7.4.0/gni/sma/lib64 -L/opt/cray/pe/libsci/16.06.1/INTEL/15.0/x86_64/lib -L/opt/cray/dmapp/default/lib64 -L/opt/cray/pe/mpt/7.4.0/gni/mpich-intel/15.0/lib -L/global/common/cori/software/darshan/3.0.1/lib -L/opt/cray/rca/1.0.0-6.21/lib64 -L/opt/cray/alps/6.1.3-17.12/lib64 -L/opt/cray/xpmem/0.1-4.5/lib64 -L/opt/cray/dmapp/7.1.0-12.37/lib64 -L/opt/cray/pe/pmi/5.0.10-1.0000.11050.0.0.ari/lib64 -L/opt/cray/ugni/6.0.12-2.1/lib64 -L/opt/cray/udreg/2.3.2-4.6/lib64 -L/opt/cray/pe/atp/2.0.2/libApp -L/lib64 -L/opt/cray/wlm_detect/1.1.0-4.2/lib64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4 -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64_lin -L/usr/lib64/gcc/x86_64-suse-linux/4.8/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64 -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/ipp/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/compiler/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/mkl/lib/intel64/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/tbb/lib/intel64/gcc4.4/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/lib/intel64_lin/ -L/opt/intel/compilers_and_libraries_2016.3.210/linux/daal/../compiler/lib/intel64_lin/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/lib/ -L/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../ -L/lib/ -L/usr/lib64 -L/usr/lib -lfmpich -lmpichcxx -ldarshan -ldarshan-stubs -lz -lAtpSigHandler -lAtpSigHCommData -lpthread -lmpichf90_intel -lrt -lugni -lpmi -limf -lm -ldl -lsma -ldmapp -lsci_intel_mpi -lsci_intel -lmpich_intel -lalpslli -lwlm_detect -lalpsutil -lrca -lxpmem -ludreg -lifport -lifcore -lsvml -lipgo -lirc -lirc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking if Fortran compiler supports intrinsic SIZEOF... yes checking if Fortran default REAL is DOUBLE PRECISION... no checking whether we are using the GNU C++ compiler... yes checking whether /opt/cray/pe/craype/2.5.5/bin/CC accepts -g... yes checking dependency style of /opt/cray/pe/craype/2.5.5/bin/CC... gcc3 checking how to run the C++ preprocessor... /opt/cray/pe/craype/2.5.5/bin/CC -E checking if c++ interface enabled... no checking for perl... perl checking whether /usr/bin/gmake sets $(MAKE)... (cached) yes checking for tr... /usr/bin/tr checking if srcdir= and time commands work together... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /opt/cray/pe/craype/2.5.5/bin/cc... /usr/x86_64-suse-linux/bin/ld checking if the linker (/usr/x86_64-suse-linux/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-suse-linux/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from /opt/cray/pe/craype/2.5.5/bin/cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /opt/cray/pe/craype/2.5.5/bin/cc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /opt/cray/pe/craype/2.5.5/bin/cc supports -fno-rtti -fno-exceptions... yes checking for /opt/cray/pe/craype/2.5.5/bin/cc option to produce PIC... -fPIC -DPIC checking if /opt/cray/pe/craype/2.5.5/bin/cc PIC flag -fPIC -DPIC works... yes checking if /opt/cray/pe/craype/2.5.5/bin/cc static flag -static works... yes checking if /opt/cray/pe/craype/2.5.5/bin/cc supports -c -o file.o... yes checking if /opt/cray/pe/craype/2.5.5/bin/cc supports -c -o file.o... (cached) yes checking whether the /opt/cray/pe/craype/2.5.5/bin/cc linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... yes checking whether a program can dlopen itself... no checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for /opt/cray/pe/craype/2.5.5/bin/ftn option to produce PIC... -fPIC checking if /opt/cray/pe/craype/2.5.5/bin/ftn PIC flag -fPIC works... yes checking if /opt/cray/pe/craype/2.5.5/bin/ftn static flag -static works... yes checking if /opt/cray/pe/craype/2.5.5/bin/ftn supports -c -o file.o... yes checking if /opt/cray/pe/craype/2.5.5/bin/ftn supports -c -o file.o... (cached) yes checking whether the /opt/cray/pe/craype/2.5.5/bin/ftn linker (/usr/x86_64-suse-linux/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking make... checking how make searches directories... VPATH=DIR1 DIR2 ... checking whether make will build with undefined variables... yes checking for production mode... production checking for ceil in -lm... yes checking for dlopen in -ldl... yes checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking for difftime... yes checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for clock_gettime... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/stat.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/types.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking setjmp.h usability... yes checking setjmp.h presence... yes checking for setjmp.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for stdint.h... (cached) yes checking mach/mach_time.h usability... no checking mach/mach_time.h presence... no checking for mach/mach_time.h... no checking io.h usability... no checking io.h presence... no checking for io.h... no checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking sys/timeb.h usability... yes checking sys/timeb.h presence... yes checking for sys/timeb.h... yes checking if configure should try to set up large file support... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking if large (64-bit) files are supported on this system.... yes checking for lseek64... yes checking for fseeko64... yes checking for ftello64... yes checking for ftruncate64... yes checking for fseeko... yes checking for ftello... yes checking for stat64... yes checking for fstat64... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of int8_t... 1 checking size of uint8_t... 1 checking size of int_least8_t... 1 checking size of uint_least8_t... 1 checking size of int_fast8_t... 1 checking size of uint_fast8_t... 1 checking size of int16_t... 2 checking size of uint16_t... 2 checking size of int_least16_t... 2 checking size of uint_least16_t... 2 checking size of int_fast16_t... 8 checking size of uint_fast16_t... 8 checking size of int32_t... 4 checking size of uint32_t... 4 checking size of int_least32_t... 4 checking size of uint_least32_t... 4 checking size of int_fast32_t... 8 checking size of uint_fast32_t... 8 checking size of int64_t... 8 checking size of uint64_t... 8 checking size of int_least64_t... 8 checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of off_t... 8 checking size of off64_t... 8 checking if dev_t is scalar... yes checking for dmalloc library... suppressed checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking for szlib... suppressed checking for pthread... suppressed checking for thread safe support... no checking whether CLOCK_MONOTONIC is declared... yes checking for tm_gmtoff in struct tm... yes checking for __tm_gmtoff in struct tm... no checking for global timezone variable... no checking whether struct tm is in sys/time.h or time.h... time.h checking for struct tm.tm_zone... yes checking for struct timezone... yes checking whether gettimeofday() gives timezone... yes checking for st_blocks in struct stat... yes checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... no checking for _scrsize... no checking for ioctl... yes checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... yes checking for TIOCGETD... yes checking for alarm... yes checking for BSDgettimeofday... no checking for fork... yes checking for frexpf... yes checking for frexpl... yes checking for gethostname... yes checking for getpwuid... yes checking for getrusage... yes checking for lstat... yes checking for rand_r... yes checking for random... yes checking for setsysinfo... no checking for signal... yes checking for longjmp... yes checking for setjmp... yes checking for siglongjmp... yes checking for sigsetjmp... no checking for sigprocmask... yes checking for snprintf... yes checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for tmpfile... yes checking for vasprintf... yes checking for waitpid... yes checking for vsnprintf... yes checking if vsnprintf returns correct value... yes checking if lone colon can be used as an argument... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking Threads support system scope... yes checking for gpfs... suppressed checking for debug flags... none checking whether function stack tracking is enabled... no checking whether metadata trace file code is enabled... no checking for API tracing... no checking for instrumented library... no checking whether to clear file buffers... yes checking whether a memory checking tool will be used... no checking for parallel support files... provided by compiler checking prefix for running on one processor... checking prefix for running in parallel... mpiexec -n $${NPROCS:=6} checking whether a simple MPI-IO program can be linked... yes checking for MPI_Comm_c2f and MPI_Comm_f2c functions... yes checking for MPI_Info_c2f and MPI_Info_f2c functions... yes checking for MPE... suppressed checking if MPI_File_set_size works for files over 2GB... yes checking if MPI_File_get_size is enabled... yes checking for I/O filters... all (shuffle,fletcher32,nbit,scaleoffset) checking for Default Virtual File Driver definition... yes checking for Direct Virtual File Driver support... no checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if converting denormalized floating-point values is possible... yes checking if converting floating-point values to long long is not working... false checking if the machine has window style path name... no checking if converting from long double to integers is accurate... yes checking if converting from long double to integers works... yes checking if accurately converting from integers to long double... yes checking if accurately converting unsigned long to float values... yes checking if accurately converting unsigned long long to floating-point values... yes checking if accurately roundup converting floating-point to unsigned long long values... yes checking if right maximum converting floating-point to unsigned long long values... no checking if correctly converting long double to unsigned int values... yes checking if compiling unsigned long long to floating-point typecasts work... yes checking if compiling long long to floating-point typecasts work... yes checking if converting unsigned long long to long double with precision... yes checking if overflows normally converting floating-point to integer values... yes checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if bad code for log2 routine is generated... no checking if high level library is enabled... yes checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v18 checking whether to perform strict file format checks... no checking whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no configure: creating ./config.lt config.lt: creating libtool fixing $wl in libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating test/testcheck_version.sh config.status: creating test/testerror.sh config.status: creating test/H5srcdir_str.h config.status: creating test/testlibinfo.sh config.status: creating test/testlinks_env.sh config.status: creating test/test_plugin.sh config.status: creating testpar/Makefile config.status: creating testpar/testph5.sh config.status: creating perform/Makefile config.status: creating tools/Makefile config.status: creating tools/h5dump/Makefile config.status: creating tools/h5dump/testh5dump.sh config.status: creating tools/h5dump/testh5dumppbits.sh config.status: creating tools/h5dump/testh5dumpxml.sh config.status: creating tools/h5ls/testh5ls.sh config.status: creating tools/h5import/Makefile config.status: creating tools/h5import/h5importtestutil.sh config.status: creating tools/h5diff/Makefile config.status: creating tools/h5diff/testh5diff.sh config.status: creating tools/h5diff/testph5diff.sh config.status: creating tools/h5jam/Makefile config.status: creating tools/h5jam/testh5jam.sh config.status: creating tools/h5repack/Makefile config.status: creating tools/h5repack/h5repack.sh config.status: creating tools/h5repack/h5repack_plugin.sh config.status: creating tools/h5ls/Makefile config.status: creating tools/h5copy/Makefile config.status: creating tools/h5copy/testh5copy.sh config.status: creating tools/lib/Makefile config.status: creating tools/misc/Makefile config.status: creating tools/misc/h5cc config.status: creating tools/misc/testh5mkgrp.sh config.status: creating tools/misc/testh5repart.sh config.status: creating tools/h5stat/testh5stat.sh config.status: creating tools/h5stat/Makefile config.status: creating examples/Makefile config.status: creating examples/run-c-ex.sh config.status: creating examples/testh5cc.sh config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating c++/test/Makefile config.status: creating c++/test/H5srcdir_str.h config.status: creating c++/examples/Makefile config.status: creating c++/examples/run-c++-ex.sh config.status: creating c++/examples/testh5c++.sh config.status: creating fortran/Makefile config.status: creating fortran/src/h5fc config.status: creating fortran/src/Makefile config.status: creating fortran/test/Makefile config.status: creating fortran/testpar/Makefile config.status: creating fortran/examples/Makefile config.status: creating fortran/examples/run-fortran-ex.sh config.status: creating fortran/examples/testh5fc.sh config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/test/Makefile config.status: creating hl/test/H5srcdir_str.h config.status: creating hl/tools/Makefile config.status: creating hl/tools/gif2h5/Makefile config.status: creating hl/tools/gif2h5/h52giftest.sh config.status: creating hl/examples/Makefile config.status: creating hl/examples/run-hlc-ex.sh config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating hl/c++/test/Makefile config.status: creating hl/c++/examples/Makefile config.status: creating hl/c++/examples/run-hlc++-ex.sh config.status: creating hl/fortran/Makefile config.status: creating hl/fortran/src/Makefile config.status: creating hl/fortran/test/Makefile config.status: creating hl/fortran/examples/Makefile config.status: creating hl/fortran/examples/run-hlfortran-ex.sh config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.8.12 Configured on: Sat Jul 2 09:44:11 PDT 2016 Configured by: gpau@cori05 Configure mode: production Host system: x86_64-unknown-linux-gnu Uname information: Linux cori05 3.12.51-52.39-default #1 SMP Fri Jan 15 20:03:12 UTC 2016 (16f5bac) x86_64 x86_64 x86_64 GNU/Linux Byte sex: little-endian Libraries: static Installation point: /global/cscratch1/sd/gpau/tough3/tough3-install/tpls Compiling Options: ------------------ Compilation Mode: production C Compiler: /opt/cray/pe/craype/2.5.5/bin/cc CFLAGS: -O H5_CFLAGS: -std=c99 -O AM_CFLAGS: CPPFLAGS: H5_CPPFLAGS: -D_POSIX_C_SOURCE=199506L -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE Shared C Library: no Static C Library: yes Statically Linked Executables: no LDFLAGS: H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lz -ldl -lm Archiver: /usr/bin/ar Ranlib: ranlib Debugged Packages: API Tracing: no Languages: ---------- Fortran: yes Fortran Compiler: /opt/cray/pe/craype/2.5.5/bin/ftn Fortran 2003 Compiler: no Fortran Flags: -O H5 Fortran Flags: -O3 AM Fortran Flags: Shared Fortran Library: no Static Fortran Library: yes C++: no Features: --------- Parallel HDF5: yes High Level library: yes Threadsafety: no Default API Mapping: v18 With Deprecated Public Symbols: yes I/O filters (external): deflate(zlib) I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset MPE: Direct VFD: no dmalloc: no Clear file buffers before write: yes Using memory checker: no Function Stack Tracing: no GPFS: no Strict File Format Checks: no Optimization Instrumentation: no Large File Support (LFS): yes =============================================================================== Running make on HDF5; this may take several minutes =============================================================================== Executing: cd /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12 && /usr/bin/gmake clean stdout: gmake[3]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12' Making clean in src gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' test -z "libhdf5.la" || rm -f libhdf5.la rm -f ./so_locations rm -rf .libs _libs rm -f H5detect H5make_libsettings rm -f *.o test -z "H5Tinit.c H5lib_settings.c" || rm -f H5Tinit.c H5lib_settings.c rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' Making clean in test gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/test' rm -f testhdf5 lheap ohdr stab gheap cache cache_api pool accum hyperslab istore bittests dt_arith dtypes dsets cmpd_dset filter_fail extend external efc objcopy links unlink big mtime fillval mount flush1 flush2 app_ref enum set_extent ttsafe getname vfd ntypes dangle dtransform reserved cross_read freespace mf btree2 fheap file_image unregister error_test err_compat tcheck_version testmeta links_env test -z "" || rm -f rm -rf .libs _libs test -z "libh5test.la" || rm -f libh5test.la rm -f ./so_locations rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog accum.h5 cmpd_dset.h5 compact_dataset.h5 dataset.h5 dset_offset.h5 max_compact_dataset.h5 simple.h5 set_local.h5 random_chunks.h5 huge_chunks.h5 chunk_cache.h5 big_chunk.h5 chunk_expand.h5 copy_dcpl_newfile.h5 extend.h5 istore.h5 extlinks*.h5 frspace.h5 links*.h5 sys_file1 tfile[1-7].h5 th5s[1-4].h5 lheap.h5 fheap.h5 ohdr.h5 stab.h5 extern_[1-3].h5 extern_[1-4][ab].raw gheap[0-4].h5 dt_arith[1-2] links.h5 links[0-6]*.h5 extlinks[0-15].h5 tmp big.data big[0-9][0-9][0-9][0-9][0-9].h5 stdio.h5 sec2.h5 dtypes[0-9].h5 dtypes1[0].h5 dt_arith[1-2].h5 tattr.h5 tselect.h5 mtime.h5 unlink.h5 unicode.h5 coord.h5 fillval_[0-9].h5 fillval.raw mount_[0-9].h5 testmeta.h5 ttime.h5 trefer[1-3].h5 tvltypes.h5 tvlstr.h5 tvlstr2.h5 flush.h5 enum1.h5 titerate.h5 ttsafe.h5 tarray1.h5 tgenprop.h5 tmisc[0-9]*.h5 set_extent[1-5].h5 ext[12].bin getname.h5 getname[1-3].h5 sec2_file.h5 direct_file.h5 family_file000[0-3][0-9].h5 new_family_v16_000[0-3][0-9].h5 multi_file-[rs].h5 core_file plugin.h5 new_move_[ab].h5 ntypes.h5 dangle.h5 error_test.h5 err_compat.h5 dtransform.h5 test_filters.h5 get_file_name.h5 tstint[1-2].h5 unlink_chunked.h5 btree2.h5 objcopy_src.h5 objcopy_dst.h5 objcopy_ext.dat trefer1.h5 trefer2.h5 app_ref.h5 tcheck_version_*.out tcheck_version_*.err efc[0-5].h5 log_vfd_out.log new_multi_file_v16-r.h5 new_multi_file_v16-s.h5 split_get_file_image_test-m.h5 split_get_file_image_test-r.h5 file_image_core_test.h5.copy unregister_filter_1.h5 unregister_filter_2.h5 gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/test' Making clean in testpar gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/testpar' rm -f t_mpi t_posix_compliant testphdf5 t_cache t_pflush1 t_pflush2 t_shapesame rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog MPItest.h5 Para*.h5 CacheTestDummy.h5 go gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/testpar' Making clean in tools gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools' Making clean in lib gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/lib' rm -rf .libs _libs test -z "libh5tools.la" || rm -f libh5tools.la rm -f ./so_locations rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/lib' Making clean in h5diff gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5diff' rm -f h5diff ph5diff rm -f h5diffgentest rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 expect_sorted actual_sorted gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5diff' Making clean in h5ls gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5ls' rm -f h5ls rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5ls' Making clean in h5dump gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5dump' rm -f h5dump rm -f h5dumpgentest binread rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 *.bin gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5dump' Making clean in misc gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/misc' rm -f h5debug h5repart h5mkgrp rm -f h5repart_gentest talign repart_test test -z "h5redeploy" || rm -f h5redeploy rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/misc' Making clean in h5import gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5import' rm -f h5import rm -f h5importtest rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.bin gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5import' Making clean in h5repack gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5repack' rm -f h5repack rm -f h5repacktst test -z "" || rm -f rm -rf .libs _libs rm -f testh5repack_detect_szip rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 *.bin gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5repack' Making clean in h5jam gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5jam' rm -f h5jam h5unjam rm -f tellub h5jamgentest getub rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5jam' Making clean in h5copy gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5copy' rm -f h5copy rm -f h5copygentest rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5copy' Making clean in h5stat gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5stat' rm -f h5stat rm -f h5stat_gentest test -z "" || rm -f rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools/h5stat' gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools' rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools' gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/tools' Making clean in . gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12' rm -rf .libs _libs rm -f *.lo if test -d ii_files; then \ rm -f -rf ii_files; \ fi gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12' Making clean in fortran gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran' Making clean in src gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran/src' test -z "libhdf5_fortran.la" || rm -f libhdf5_fortran.la rm -f ./so_locations rm -rf .libs _libs rm -f H5match_types H5fortran_detect H5test_kind rm -f *.o test -z "H5fortran_types.f90 H5f90i_gen.h H5fort_type_defines.h H5fortran_detect.f90" || rm -f H5fortran_types.f90 H5f90i_gen.h H5fort_type_defines.h H5fortran_detect.f90 rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran/src' Making clean in test gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran/test' rm -f fortranlib_test fflush1 fflush2 fortranlib_test_1_8 rm -rf .libs _libs test -z "libh5test_fortran.la" || rm -f libh5test_fortran.la rm -f ./so_locations rm -f *.o test -z "*.tmp" || rm -f *.tmp rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran/test' Making clean in testpar gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran/testpar' rm -f parallel_test rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog parf[12].h5 gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran/testpar' gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran' rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran' gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/fortran' Making clean in hl gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl' Making clean in src gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/src' test -z "libhdf5_hl.la" || rm -f libhdf5_hl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/src' Making clean in test gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/test' rm -f test_lite test_image test_file_image test_table test_ds test_packet test_dset_opt rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog combine_tables[1-2].h5 test_ds[1-9].h5 test_ds10.h5 test_image[1-3].h5 file_img[1-2].h5 test_lite[1-4].h5 test_table.h5 test_packet_table.h5 test_packet_compress.h5 test_detach.h5 test_dectris.h5 gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/test' Making clean in tools gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/tools' Making clean in gif2h5 gmake[6]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/tools/gif2h5' rm -f gif2h5 h52gif rm -rf .libs _libs rm -f h52gifgentst rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 *.gif gmake[6]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/tools/gif2h5' gmake[6]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/tools' rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[6]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/tools' gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/tools' Making clean in fortran gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/fortran' Making clean in src gmake[6]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/fortran/src' test -z "libhdf5hl_fortran.la" || rm -f libhdf5hl_fortran.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[6]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/fortran/src' Making clean in test gmake[6]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/fortran/test' rm -f tstds tstlite tstimage tsttable rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog dsetf[1-4].h5 f1img.h5 f1tab.h5 tstds.h5 gmake[6]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/fortran/test' gmake[6]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/fortran' rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[6]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/fortran' gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl/fortran' gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl' rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl' gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/hl' Making clean in perform gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/perform' rm -f h5perf_serial h5perf rm -f iopipe chunk overhead zip_perf perf_meta perf test -z "*.h5 *.raw *.dat x-gnuplot perftest.out" || rm -f *.h5 *.raw *.dat x-gnuplot perftest.out rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/perform' gmake[3]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12' Executing: cd /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12 && /usr/bin/gmake -j 24 stdout: gmake[3]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12' Making all in src gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' /usr/bin/gmake all-am gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' CC H5.lo CC H5checksum.lo CC H5dbg.lo CC H5system.lo CC H5trace.lo CC H5timer.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5CS.lo CC H5D.lo CC H5Dbtree.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Defl.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dmpio.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dtest.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fmpi.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDdirect.lo CC H5FDfamily.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmpi.lo CC H5FDmpio.lo CC H5FDmpiposix.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDstdio.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Lexternal.lo CC H5make_libsettings.o CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oginfo.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Ostab.lo CC H5Oshmesg.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PL.lo CC H5R.lo CC H5Rdeprec.lo CC H5RC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Shyper.lo CC H5Smpio.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5V.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zszip.lo CC H5Zscaleoffset.lo CC H5Ztrans.lo CCLD H5make_libsettings CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings > H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) Makefile:1328: recipe for target 'H5lib_settings.c' failed gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' Makefile:634: recipe for target 'all' failed gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' Makefile:539: recipe for target 'all-recursive' failed gmake[3]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12' **** Configure header /global/cscratch1/sd/gpau/petsc-ffbsUg/confdefs.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_MATHIMF_H #define PETSC_HAVE_MATHIMF_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LOG2 #define PETSC_HAVE_LOG2 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-linux2-c-opt" #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_USE_VISIBILITY_C #define PETSC_USE_VISIBILITY_C 1 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE___INT64 #define PETSC_HAVE___INT64 1 #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_USE_VISIBILITY_CXX #define PETSC_USE_VISIBILITY_CXX 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_CLANGUAGE_C #define PETSC_CLANGUAGE_C 1 #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_IALLREDUCE #define PETSC_HAVE_MPI_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK #define PETSC_HAVE_MPI_REDUCE_SCATTER_BLOCK 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_CONTIGUOUS #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_SCATTER #define PETSC_HAVE_MPI_REDUCE_SCATTER 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPICH_NUMVERSION #define PETSC_HAVE_MPICH_NUMVERSION 30200201 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_IBARRIER #define PETSC_HAVE_MPI_IBARRIER 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_MPI_REDUCE_LOCAL #define PETSC_HAVE_MPI_REDUCE_LOCAL 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_IPXFARGC_ #define PETSC_HAVE_IPXFARGC_ 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_SIZE #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #endif #ifndef PETSC_USE_MALLOC_COALESCED #define PETSC_USE_MALLOC_COALESCED 1 #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_HAVE_PXFGETARG_NEW #define PETSC_HAVE_PXFGETARG_NEW 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GETARG #define PETSC_HAVE_GETARG 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC__DEFAULT_SOURCE #define PETSC__DEFAULT_SOURCE 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_HAVE_SCHED_CPU_SET_T #define PETSC_HAVE_SCHED_CPU_SET_T 1 #endif #ifndef PETSC_HAVE_PTHREAD_BARRIER_T #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** C specific Configure header /global/cscratch1/sd/gpau/petsc-ffbsUg/conffix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif ******************************************************************************* UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for details): ------------------------------------------------------------------------------- Error running make; make install on HDF5: Could not execute "cd /global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12 && /usr/bin/gmake -j 24 ": gmake[3]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12' Making all in src gmake[4]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' /usr/bin/gmake all-am gmake[5]: Entering directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' CC H5.lo CC H5checksum.lo CC H5dbg.lo CC H5system.lo CC H5trace.lo CC H5timer.lo CC H5A.lo CC H5Abtree2.lo CC H5Adense.lo CC H5Adeprec.lo CC H5Aint.lo CC H5Atest.lo CC H5AC.lo CC H5B.lo CC H5Bcache.lo CC H5Bdbg.lo CC H5B2.lo CC H5B2cache.lo CC H5B2dbg.lo CC H5B2hdr.lo CC H5B2int.lo CC H5B2stat.lo CC H5B2test.lo CC H5C.lo CC H5CS.lo CC H5D.lo CC H5Dbtree.lo CC H5Dchunk.lo CC H5Dcompact.lo CC H5Dcontig.lo CC H5Ddbg.lo CC H5Ddeprec.lo CC H5Defl.lo CC H5Dfill.lo CC H5Dint.lo CC H5Dio.lo CC H5Dlayout.lo CC H5Dmpio.lo CC H5Doh.lo CC H5Dscatgath.lo CC H5Dselect.lo CC H5Dtest.lo CC H5E.lo CC H5Edeprec.lo CC H5Eint.lo CC H5F.lo CC H5Faccum.lo CC H5Fcwfs.lo CC H5Fdbg.lo CC H5Fefc.lo CC H5Ffake.lo CC H5Fio.lo CC H5Fmount.lo CC H5Fmpi.lo CC H5Fquery.lo CC H5Fsfile.lo CC H5Fsuper.lo CC H5Fsuper_cache.lo CC H5Ftest.lo CC H5FD.lo CC H5FDcore.lo CC H5FDdirect.lo CC H5FDfamily.lo CC H5FDint.lo CC H5FDlog.lo CC H5FDmpi.lo CC H5FDmpio.lo CC H5FDmpiposix.lo CC H5FDmulti.lo CC H5FDsec2.lo CC H5FDspace.lo CC H5FDstdio.lo CC H5FL.lo CC H5FO.lo CC H5FS.lo CC H5FScache.lo CC H5FSdbg.lo CC H5FSsection.lo CC H5FSstat.lo CC H5FStest.lo CC H5G.lo CC H5Gbtree2.lo CC H5Gcache.lo CC H5Gcompact.lo CC H5Gdense.lo CC H5Gdeprec.lo CC H5Gent.lo CC H5Gint.lo CC H5Glink.lo CC H5Gloc.lo CC H5Gname.lo CC H5Gnode.lo CC H5Gobj.lo CC H5Goh.lo CC H5Groot.lo CC H5Gstab.lo CC H5Gtest.lo CC H5Gtraverse.lo CC H5HF.lo CC H5HFbtree2.lo CC H5HFcache.lo CC H5HFdbg.lo CC H5HFdblock.lo CC H5HFdtable.lo CC H5HFhdr.lo CC H5HFhuge.lo CC H5HFiblock.lo CC H5HFiter.lo CC H5HFman.lo CC H5HFsection.lo CC H5HFspace.lo CC H5HFstat.lo CC H5HFtest.lo CC H5HFtiny.lo CC H5HG.lo CC H5HGcache.lo CC H5HGdbg.lo CC H5HGquery.lo CC H5HL.lo CC H5HLcache.lo CC H5HLdbg.lo CC H5HLint.lo CC H5HP.lo CC H5I.lo CC H5Itest.lo CC H5L.lo CC H5Lexternal.lo CC H5make_libsettings.o CC H5MF.lo CC H5MFaggr.lo CC H5MFdbg.lo CC H5MFsection.lo CC H5MM.lo CC H5MP.lo CC H5MPtest.lo CC H5O.lo CC H5Oainfo.lo CC H5Oalloc.lo CC H5Oattr.lo CC H5Oattribute.lo CC H5Obogus.lo CC H5Obtreek.lo CC H5Ocache.lo CC H5Ochunk.lo CC H5Ocont.lo CC H5Ocopy.lo CC H5Odbg.lo CC H5Odrvinfo.lo CC H5Odtype.lo CC H5Oefl.lo CC H5Ofill.lo CC H5Oginfo.lo CC H5Olayout.lo CC H5Olinfo.lo CC H5Olink.lo CC H5Omessage.lo CC H5Omtime.lo CC H5Oname.lo CC H5Onull.lo CC H5Opline.lo CC H5Orefcount.lo CC H5Osdspace.lo CC H5Oshared.lo CC H5Ostab.lo CC H5Oshmesg.lo CC H5Otest.lo CC H5Ounknown.lo CC H5P.lo CC H5Pacpl.lo CC H5Pdapl.lo CC H5Pdcpl.lo CC H5Pdeprec.lo CC H5Pdxpl.lo CC H5Pfapl.lo CC H5Pfcpl.lo CC H5Pfmpl.lo CC H5Pgcpl.lo CC H5Pint.lo CC H5Plapl.lo CC H5Plcpl.lo CC H5Pocpl.lo CC H5Pocpypl.lo CC H5Pstrcpl.lo CC H5Ptest.lo CC H5PL.lo CC H5R.lo CC H5Rdeprec.lo CC H5RC.lo CC H5RS.lo CC H5S.lo CC H5Sall.lo CC H5Sdbg.lo CC H5Shyper.lo CC H5Smpio.lo CC H5Snone.lo CC H5Spoint.lo CC H5Sselect.lo CC H5Stest.lo CC H5SL.lo CC H5SM.lo CC H5SMbtree2.lo CC H5SMcache.lo CC H5SMmessage.lo CC H5SMtest.lo CC H5ST.lo CC H5T.lo CC H5Tarray.lo CC H5Tbit.lo CC H5Tcommit.lo CC H5Tcompound.lo CC H5Tconv.lo CC H5Tcset.lo CC H5Tdbg.lo CC H5Tdeprec.lo CC H5Tenum.lo CC H5Tfields.lo CC H5Tfixed.lo CC H5Tfloat.lo CC H5detect.o CC H5Tnative.lo CC H5Toffset.lo CC H5Toh.lo CC H5Topaque.lo CC H5Torder.lo CC H5Tpad.lo CC H5Tprecis.lo CC H5Tstrpad.lo CC H5Tvisit.lo CC H5Tvlen.lo CC H5TS.lo CC H5V.lo CC H5WB.lo CC H5Z.lo CC H5Zdeflate.lo CC H5Zfletcher32.lo CC H5Znbit.lo CC H5Zshuffle.lo CC H5Zszip.lo CC H5Zscaleoffset.lo CC H5Ztrans.lo CCLD H5make_libsettings CCLD H5detect LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | \ sed -e 's/-L/:/g' -e 's/ //g'`" \ ./H5make_libsettings > H5lib_settings.c || \ (test $HDF5_Make_Ignore && echo "*** Error ignored") || \ (rm -f H5lib_settings.c ; exit 1) Makefile:1328: recipe for target 'H5lib_settings.c' failed gmake[5]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' Makefile:634: recipe for target 'all' failed gmake[4]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12/src' Makefile:539: recipe for target 'all-recursive' failed gmake[3]: Leaving directory '/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/arch-linux2-c-opt/externalpackages/hdf5-1.8.12'H5A.c(430): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (attr->shared->dt = H5T_copy(type, H5T_COPY_ALL))) ^ H5A.c(997): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if((src_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL), FALSE)) < 0 || ^ H5A.c(1157): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) (dst_id = H5I_register(H5I_DATATYPE, H5T_copy(mem_type, H5T_COPY_ALL), FALSE)) < 0) ^ H5AC.c(2788): warning #556: a value of type "MPI_Offset={long long} *" cannot be assigned to an entity of type "haddr_t={uint64_t={unsigned long}} *" addr_buf_ptr = (MPI_Offset *)H5MM_xfree((void *)addr_buf_ptr); ^ H5Dchunk.c(317): warning #2330: argument of type "const H5D_t *" is incompatible with parameter of type "H5D_t *" (dropping qualifiers) if(H5D__alloc_storage(dset, dxpl_id, H5D_ALLOC_WRITE, FALSE, NULL) < 0) ^ H5Dchunk.c(4635): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (dt_mem = H5T_copy(dt_src, H5T_COPY_TRANSIENT))) ^ H5Dchunk.c(4643): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (dt_dst = H5T_copy(dt_src, H5T_COPY_TRANSIENT))) ^ H5Dfill.c(234): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if((src_id = H5I_register(H5I_DATATYPE, H5T_copy(fill_type, H5T_COPY_ALL), FALSE)) < 0) ^ H5Dfill.c(237): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if((dst_id = H5I_register(H5I_DATATYPE, H5T_copy(buf_type, H5T_COPY_ALL), FALSE)) < 0) ^ H5Dfill.c(407): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (fb_info->mem_type = H5T_copy(dset_type, H5T_COPY_REOPEN))) ^ H5Dio.c(474): warning #167: argument of type "void **" is incompatible with parameter of type "const void **" (unsigned)H5S_GET_EXTENT_NDIMS(file_space), buf, &adj_buf, type_info.dst_type_size) < 0) ^ H5Dio.c(700): warning #167: argument of type "void **" is incompatible with parameter of type "const void **" (unsigned)H5S_GET_EXTENT_NDIMS(file_space), buf, &adj_buf, type_info.src_type_size) < 0) ^ H5Dio.c(841): warning #2332: a value of type "const H5D_dxpl_cache_t *" cannot be assigned to an entity of type "H5D_dxpl_cache_t *" (dropping qualifiers) io_info->dxpl_cache = dxpl_cache; ^ H5Eint.c(735): warning #266: function "vasprintf" declared implicitly if(HDvasprintf(&tmp, fmt, ap) < 0) ^ H5Dint.c(624): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if((dset->shared->type = H5T_copy(type, H5T_COPY_ALL)) == NULL) ^ H5E.c(1381): warning #266: function "vasprintf" declared implicitly if(HDvasprintf(&tmp, fmt, ap) < 0) ^ H5FDmpiposix.c(1273): warning #2330: argument of type "const void *" is incompatible with parameter of type "void *" (dropping qualifiers) HDmemset(buf, 0, size); ^ H5FSsection.c(2338): warning #2330: argument of type "const H5F_t *" is incompatible with parameter of type "H5F_t *" (dropping qualifiers) if(H5FS_sinfo_lock(f, dxpl_id, fspace, H5AC_WRITE) < 0) ^ H5FSsection.c(2338): warning #2330: argument of type "const H5FS_t *" is incompatible with parameter of type "H5FS_t *" (dropping qualifiers) if(H5FS_sinfo_lock(f, dxpl_id, fspace, H5AC_WRITE) < 0) ^ H5FSsection.c(2362): warning #2330: argument of type "const H5FS_t *" is incompatible with parameter of type "H5FS_t *" (dropping qualifiers) if(H5FS_sect_remove_real(fspace, tmp_sect) < 0) ^ H5FSsection.c(2376): warning #2330: argument of type "const H5F_t *" is incompatible with parameter of type "H5F_t *" (dropping qualifiers) if(sinfo_valid && H5FS_sinfo_unlock(f, dxpl_id, fspace, section_removed) < 0) ^ H5FSsection.c(2376): warning #2330: argument of type "const H5FS_t *" is incompatible with parameter of type "H5FS_t *" (dropping qualifiers) if(sinfo_valid && H5FS_sinfo_unlock(f, dxpl_id, fspace, section_removed) < 0) ^ H5Odtype.c(1188): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (dst = H5T_copy(src, H5T_COPY_ALL))) ^ H5Odtype.c(1533): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (udata->src_dtype = H5T_copy(dt_src, H5T_COPY_TRANSIENT))) ^ H5T.c(4469): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (path->src = H5T_copy(src, H5T_COPY_ALL))) ^ H5T.c(4471): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (path->dst = H5T_copy(dst, H5T_COPY_ALL))) ^ H5Tenum.c(136): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) ret_value->shared->parent = H5T_copy(parent, H5T_COPY_ALL); ^ H5Tenum.c(437): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (copied_dt = H5T_copy(dt, H5T_COPY_ALL))) ^ H5Tenum.c(576): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if (NULL==(copied_dt=H5T_copy(dt, H5T_COPY_ALL))) ^ H5Tcompound.c(484): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) parent->shared->u.compnd.memb[idx].type = H5T_copy(member, H5T_COPY_ALL); ^ H5detect.c(1345): warning #2330: argument of type "volatile float *" is incompatible with parameter of type "void *" (dropping qualifiers) DETECT_F(float, FLOAT, d_g[nd_g]); nd_g++; ^ H5detect.c(1346): warning #2330: argument of type "volatile double *" is incompatible with parameter of type "void *" (dropping qualifiers) DETECT_F(double, DOUBLE, d_g[nd_g]); nd_g++; ^ H5detect.c(1591): warning #2330: argument of type "volatile long double *" is incompatible with parameter of type "void *" (dropping qualifiers) DETECT_F(long double, LDOUBLE, d_g[nd_g]); nd_g++; ^ H5Tvlen.c(168): warning #2330: argument of type "const H5T_t *" is incompatible with parameter of type "H5T_t *" (dropping qualifiers) if(NULL == (dt->shared->parent = H5T_copy(base, H5T_COPY_ALL))) ^ H5detect.o: In function `main': H5detect.c:(.text+0xbb): warning: Using 'getpwuid' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking H5make_libsettings.o: In function `main': H5make_libsettings.c:(.text+0x5c): warning: Using 'getpwuid' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking /bin/sh: line 4: 115507 Segmentation fault LD_LIBRARY_PATH="$LD_LIBRARY_PATH`echo | sed -e 's/-L/:/g' -e 's/ //g'`" ./H5make_libsettings > H5lib_settings.c gmake[5]: *** [H5lib_settings.c] Error 1 gmake[5]: *** Waiting for unfinished jobs.... gmake[4]: *** [all] Error 2 gmake[3]: *** [all-recursive] Error 1 ******************************************************************************* File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/configure.py", line 406, in petsc_configure framework.configure(out = sys.stdout) File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/framework.py", line 1090, in configure self.processChildren() File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/framework.py", line 1079, in processChildren self.serialEvaluation(self.childGraph) File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/framework.py", line 1060, in serialEvaluation child.configure() File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py", line 783, in configure self.executeTest(self.configureLibrary) File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/base.py", line 126, in executeTest ret = test(*args,**kargs) File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/packages/hdf5.py", line 52, in configureLibrary config.package.GNUPackage.configureLibrary(self) File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py", line 692, in configureLibrary for location, directory, lib, incl in self.generateGuesses(): File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py", line 337, in generateGuesses d = self.checkDownload() File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py", line 461, in checkDownload return self.getInstallDir() File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py", line 287, in getInstallDir installDir = self.Install() File "/global/cscratch1/sd/gpau/tough3/build/tpl-build/tpls/petsc/petsc-3.7.2-source/config/BuildSystem/config/package.py", line 1253, in Install raise RuntimeError('Error running make; make install on '+self.PACKAGE+': '+str(e)) ================================================================================ Finishing Configure Run at Sat Jul 2 09:45:26 2016 ================================================================================