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And the PETSc log summary for comparison
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*** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document ***</div>
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---------------------------------------------- PETSc Performance Summary: ----------------------------------------------</div>
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./main2d on a linux-opt named aorta with 1 processor, by amneetb Thu Jan 14 19:34:38 2016</div>
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Using Petsc Development GIT revision: v3.6.3-3098-ga3ecda2 GIT Date: 2016-01-13 21:30:26 -0600</div>
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Max Max/Min Avg Total </div>
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Time (sec): 6.223e-01 1.00000 6.223e-01</div>
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Objects: 2.618e+03 1.00000 2.618e+03</div>
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Flops: 1.948e+08 1.00000 1.948e+08 1.948e+08</div>
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Flops/sec: 3.129e+08 1.00000 3.129e+08 3.129e+08</div>
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MPI Messages: 0.000e+00 0.00000 0.000e+00 0.000e+00</div>
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MPI Message Lengths: 0.000e+00 0.00000 0.000e+00 0.000e+00</div>
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MPI Reductions: 0.000e+00 0.00000</div>
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Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract)</div>
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e.g., VecAXPY() for real vectors of length N --> 2N flops</div>
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and VecAXPY() for complex vectors of length N --> 8N flops</div>
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Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions --</div>
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Avg %Total Avg %Total counts %Total Avg %Total counts %Total </div>
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0: Main Stage: 6.2232e-01 100.0% 1.9476e+08 100.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% </div>
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See the 'Profiling' chapter of the users' manual for details on interpreting output.</div>
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Phase summary info:</div>
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Count: number of times phase was executed</div>
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Time and Flops: Max - maximum over all processors</div>
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Ratio - ratio of maximum to minimum over all processors</div>
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Mess: number of messages sent</div>
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Avg. len: average message length (bytes)</div>
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Reduct: number of global reductions</div>
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Global: entire computation</div>
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Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop().</div>
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%T - percent time in this phase %F - percent flops in this phase</div>
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%M - percent messages in this phase %L - percent message lengths in this phase</div>
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%R - percent reductions in this phase</div>
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Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors)</div>
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Event Count Time (sec) Flops --- Global --- --- Stage --- Total</div>
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Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s</div>
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--- Event Stage 0: Main Stage</div>
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VecDot 4 1.0 2.9087e-05 1.0 3.31e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1139</div>
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VecDotNorm2 180 1.0 1.0626e-03 1.0 3.17e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 2983</div>
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VecMDot 288 1.0 3.8970e-03 1.0 2.38e+06 1.0 0.0e+00 0.0e+00 0.0e+00 1 1 0 0 0 1 1 0 0 0 611</div>
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VecNorm 113 1.0 9.6560e-04 1.0 1.36e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 140</div>
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VecScale 66 1.0 4.0913e-04 1.0 1.21e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 295</div>
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VecCopy 24 1.0 3.8338e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecSet 12855 1.0 1.0173e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0</div>
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VecAXPY 607 1.0 2.9583e-03 1.0 4.97e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 3 0 0 0 0 3 0 0 0 1680</div>
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VecAYPX 169 1.0 8.6975e-04 1.0 6.41e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 737</div>
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VecAXPBYCZ 34 1.0 1.1325e-04 1.0 2.77e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2443</div>
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VecWAXPY 54 1.0 1.4043e-04 1.0 2.30e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1637</div>
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VecMAXPY 301 1.0 5.6567e-03 1.0 2.38e+06 1.0 0.0e+00 0.0e+00 0.0e+00 1 1 0 0 0 1 1 0 0 0 421</div>
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VecSwap 103 1.0 3.2711e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecAssemblyBegin 561 1.0 3.5629e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
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VecAssemblyEnd 561 1.0 6.4468e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecScatterBegin 18427 1.0 1.5277e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0</div>
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BuildTwoSidedF 554 1.0 1.9150e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatMult 361 1.0 6.2765e-02 1.0 5.80e+07 1.0 0.0e+00 0.0e+00 0.0e+00 10 30 0 0 0 10 30 0 0 0 924</div>
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MatSolve 6108 1.0 6.3529e-02 1.0 9.53e+07 1.0 0.0e+00 0.0e+00 0.0e+00 10 49 0 0 0 10 49 0 0 0 1500</div>
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MatLUFactorSym 85 1.0 2.0353e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0</div>
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MatLUFactorNum 85 1.0 2.2882e-02 1.0 2.28e+07 1.0 0.0e+00 0.0e+00 0.0e+00 4 12 0 0 0 4 12 0 0 0 995</div>
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MatScale 4 1.0 2.2912e-04 1.0 2.51e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1096</div>
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MatAssemblyBegin 108 1.0 6.7949e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatAssemblyEnd 108 1.0 2.9209e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatGetRow 33120 1.0 2.0407e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0</div>
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MatGetRowIJ 85 1.0 1.2467e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatGetSubMatrice 4 1.0 8.2304e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
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MatGetOrdering 85 1.0 7.8776e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
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MatAXPY 4 1.0 4.9517e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 8 0 0 0 0 8 0 0 0 0 0</div>
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MatPtAP 4 1.0 4.4372e-02 1.0 4.99e+06 1.0 0.0e+00 0.0e+00 0.0e+00 7 3 0 0 0 7 3 0 0 0 112</div>
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MatPtAPSymbolic 4 1.0 2.7586e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0</div>
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MatPtAPNumeric 4 1.0 1.6756e-02 1.0 4.99e+06 1.0 0.0e+00 0.0e+00 0.0e+00 3 3 0 0 0 3 3 0 0 0 298</div>
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MatGetSymTrans 4 1.0 3.6120e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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KSPGMRESOrthog 12 1.0 4.9458e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
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KSPSetUp 90 1.0 5.6815e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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KSPSolve 1 1.0 3.8819e-01 1.0 1.89e+08 1.0 0.0e+00 0.0e+00 0.0e+00 62 97 0 0 0 62 97 0 0 0 488</div>
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PCSetUp 90 1.0 6.4402e-02 1.0 2.28e+07 1.0 0.0e+00 0.0e+00 0.0e+00 10 12 0 0 0 10 12 0 0 0 354</div>
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PCSetUpOnBlocks 84 1.0 5.2499e-02 1.0 2.28e+07 1.0 0.0e+00 0.0e+00 0.0e+00 8 12 0 0 0 8 12 0 0 0 434</div>
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PCApply 12 1.0 3.4369e-01 1.0 1.89e+08 1.0 0.0e+00 0.0e+00 0.0e+00 55 97 0 0 0 55 97 0 0 0 549</div>
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SNESSolve 1 1.0 3.9208e-01 1.0 1.89e+08 1.0 0.0e+00 0.0e+00 0.0e+00 63 97 0 0 0 63 97 0 0 0 483</div>
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SNESFunctionEval 2 1.0 3.2527e-03 1.0 4.68e+04 1.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 14</div>
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SNESJacobianEval 1 1.0 4.6706e-04 1.0 4.26e+03 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 9</div>
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Memory usage is given in bytes:</div>
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Object Type Creations Destructions Memory Descendants' Mem.</div>
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Reports information only for process 0.</div>
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--- Event Stage 0: Main Stage</div>
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Vector 739 639 9087400 0.</div>
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Vector Scatter 290 289 189584 0.</div>
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Index Set 1086 738 885136 0.</div>
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IS L to G Mapping 110 109 2156656 0.</div>
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Application Order 6 6 99952 0.</div>
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MatMFFD 1 1 776 0.</div>
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Matrix 189 189 19106368 0.</div>
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Matrix Null Space 4 4 2432 0.</div>
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Krylov Solver 90 90 122720 0.</div>
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DMKSP interface 1 1 648 0.</div>
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Preconditioner 90 90 89864 0.</div>
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SNES 1 1 1328 0.</div>
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SNESLineSearch 1 1 984 0.</div>
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DMSNES 1 1 664 0.</div>
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Distributed Mesh 2 2 9168 0.</div>
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Star Forest Bipartite Graph 4 4 3168 0.</div>
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Discrete System 2 2 1712 0.</div>
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Viewer 1 0 0 0.</div>
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========================================================================================================================</div>
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Average time to get PetscTime(): 7.15256e-07</div>
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#PETSc Option Table entries:</div>
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-ib_ksp_converged_reason</div>
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-ib_ksp_monitor_true_residual</div>
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-ib_snes_type ksponly</div>
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-log_summary</div>
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-stokes_ib_pc_level_ksp_richardson_self_scale</div>
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-stokes_ib_pc_level_ksp_type richardson</div>
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-stokes_ib_pc_level_pc_asm_local_type additive</div>
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-stokes_ib_pc_level_pc_asm_type interpolate</div>
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-stokes_ib_pc_level_sub_pc_factor_shift_type nonzero</div>
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-stokes_ib_pc_level_sub_pc_type lu</div>
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#End of PETSc Option Table entries</div>
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Compiled without FORTRAN kernels</div>
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Compiled with full precision matrices (default)</div>
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sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4</div>
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Configure options: --CC=mpicc --CXX=mpicxx --FC=mpif90 --with-default-arch=0 --PETSC_ARCH=linux-opt --with-debugging=0 --with-c++-support=1 --with-hypre=1 --download-hypre=1 --with-hdf5=yes --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3</div>
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Libraries compiled on Thu Jan 14 01:29:56 2016 on aorta </div>
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Machine characteristics: Linux-3.13.0-63-generic-x86_64-with-Ubuntu-14.04-trusty</div>
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Using PETSc directory: /not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc</div>
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Using PETSc arch: linux-opt</div>
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Using C compiler: mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Qunused-arguments -O3 ${COPTFLAGS} ${CFLAGS}</div>
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Using Fortran compiler: mpif90 -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O3 ${FOPTFLAGS} ${FFLAGS} </div>
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Using include paths: -I/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/include -I/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/include -I/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/include
-I/not_backed_up/softwares/MPICH/include</div>
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Using C linker: mpicc</div>
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Using Fortran linker: mpif90</div>
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Using libraries: -Wl,-rpath,/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -lpetsc -Wl,-rpath,/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/lib
-lHYPRE -Wl,-rpath,/not_backed_up/softwares/MPICH/lib -L/not_backed_up/softwares/MPICH/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu
-L/lib/x86_64-linux-gnu -lmpicxx -lstdc++ -llapack -lblas -lpthread -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -lm -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/not_backed_up/softwares/MPICH/lib -L/not_backed_up/softwares/MPICH/lib
-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu
-ldl -Wl,-rpath,/not_backed_up/softwares/MPICH/lib -lmpi -lgcc_s -ldl </div>
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<blockquote type="cite" class="">
<div class="">On Jan 14, 2016, at 4:31 PM, Bhalla, Amneet Pal Singh <<a href="mailto:amneetb@ad.unc.edu" class="">amneetb@ad.unc.edu</a>> wrote:</div>
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<div class="">On Jan 14, 2016, at 11:24 AM, Barry Smith <<a href="mailto:bsmith@mcs.anl.gov" class="">bsmith@mcs.anl.gov</a>> wrote:</div>
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<div class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">Also
getting the results with Instruments or HPCToolkit would be useful (so long as we don't need to install HPCTool ourselves to see the results).</span><br style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px;" class="">
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<div class="">@Barry — Attached is the </div>
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<span id="cid:C46CF8C4-A5A8-421E-8763-44702A8CD07E"><main2dProfiling.numbers></span>
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<div class="">output from HPCToolkit profiler for all the operations done in solving 1 timestep Stokes+IB simulation. </div>
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