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<div class="">On Jan 13, 2016, at 9:17 PM, Griffith, Boyce Eugene <<a href="mailto:boyceg@email.unc.edu" class="">boyceg@email.unc.edu</a>> wrote:</div>
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<div class=""><span style="font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: auto; text-align: start; text-indent: 0px; text-transform: none; white-space: normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; float: none; display: inline !important;" class="">I
see one hot spot:</span></div>
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<div class="">Here is with opt build</div>
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*** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document ***</div>
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************************************************************************************************************************</div>
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---------------------------------------------- PETSc Performance Summary: ----------------------------------------------</div>
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./main2d on a linux-opt named aorta with 1 processor, by amneetb Thu Jan 14 02:24:43 2016</div>
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Using Petsc Development GIT revision: v3.6.3-3098-ga3ecda2 GIT Date: 2016-01-13 21:30:26 -0600</div>
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Max Max/Min Avg Total </div>
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Time (sec): 1.018e+00 1.00000 1.018e+00</div>
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Objects: 2.935e+03 1.00000 2.935e+03</div>
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Flops: 4.957e+08 1.00000 4.957e+08 4.957e+08</div>
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Flops/sec: 4.868e+08 1.00000 4.868e+08 4.868e+08</div>
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MPI Messages: 0.000e+00 0.00000 0.000e+00 0.000e+00</div>
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MPI Message Lengths: 0.000e+00 0.00000 0.000e+00 0.000e+00</div>
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MPI Reductions: 0.000e+00 0.00000</div>
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Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract)</div>
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e.g., VecAXPY() for real vectors of length N --> 2N flops</div>
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and VecAXPY() for complex vectors of length N --> 8N flops</div>
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Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions --</div>
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Avg %Total Avg %Total counts %Total Avg %Total counts %Total </div>
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0: Main Stage: 1.0183e+00 100.0% 4.9570e+08 100.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% </div>
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See the 'Profiling' chapter of the users' manual for details on interpreting output.</div>
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Phase summary info:</div>
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Count: number of times phase was executed</div>
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Time and Flops: Max - maximum over all processors</div>
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Ratio - ratio of maximum to minimum over all processors</div>
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Mess: number of messages sent</div>
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Avg. len: average message length (bytes)</div>
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Reduct: number of global reductions</div>
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Global: entire computation</div>
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Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop().</div>
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%T - percent time in this phase %F - percent flops in this phase</div>
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%M - percent messages in this phase %L - percent message lengths in this phase</div>
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%R - percent reductions in this phase</div>
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Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors)</div>
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Event Count Time (sec) Flops --- Global --- --- Stage --- Total</div>
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Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s</div>
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--- Event Stage 0: Main Stage</div>
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VecDot 4 1.0 2.9564e-05 1.0 3.31e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1120</div>
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VecDotNorm2 272 1.0 1.4565e-03 1.0 4.25e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 2920</div>
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VecMDot 624 1.0 8.4300e-03 1.0 5.29e+06 1.0 0.0e+00 0.0e+00 0.0e+00 1 1 0 0 0 1 1 0 0 0 627</div>
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VecNorm 565 1.0 3.8033e-03 1.0 4.38e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1151</div>
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VecScale 86 1.0 5.5480e-04 1.0 1.55e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 279</div>
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VecCopy 28 1.0 5.2261e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecSet 14567 1.0 1.2443e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
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VecAXPY 903 1.0 4.2996e-03 1.0 6.66e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 1550</div>
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VecAYPX 225 1.0 1.2550e-03 1.0 8.55e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 681</div>
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VecAXPBYCZ 42 1.0 1.7118e-04 1.0 3.45e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2014</div>
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VecWAXPY 70 1.0 1.9503e-04 1.0 2.98e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 1528</div>
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VecMAXPY 641 1.0 1.1136e-02 1.0 5.29e+06 1.0 0.0e+00 0.0e+00 0.0e+00 1 1 0 0 0 1 1 0 0 0 475</div>
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VecSwap 135 1.0 4.5896e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecAssemblyBegin 745 1.0 4.9477e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecAssemblyEnd 745 1.0 9.2411e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecScatterBegin 40831 1.0 3.4502e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0</div>
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BuildTwoSidedF 738 1.0 2.6712e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatMult 513 1.0 9.1235e-02 1.0 7.75e+07 1.0 0.0e+00 0.0e+00 0.0e+00 9 16 0 0 0 9 16 0 0 0 849</div>
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MatSolve 13568 1.0 2.3605e-01 1.0 3.45e+08 1.0 0.0e+00 0.0e+00 0.0e+00 23 70 0 0 0 23 70 0 0 0 1460</div>
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MatLUFactorSym 84 1.0 3.7430e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0</div>
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MatLUFactorNum 85 1.0 3.9623e-02 1.0 4.19e+07 1.0 0.0e+00 0.0e+00 0.0e+00 4 8 0 0 0 4 8 0 0 0 1058</div>
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MatILUFactorSym 1 1.0 3.3617e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatScale 4 1.0 2.5511e-04 1.0 2.51e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 984</div>
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MatAssemblyBegin 108 1.0 6.3658e-05 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatAssemblyEnd 108 1.0 2.9490e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatGetRow 33120 1.0 2.0157e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0</div>
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MatGetRowIJ 85 1.0 1.2145e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatGetSubMatrice 4 1.0 8.4379e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatGetOrdering 85 1.0 7.7887e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatAXPY 4 1.0 4.9596e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 5 0 0 0 0 5 0 0 0 0 0</div>
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MatPtAP 4 1.0 4.4426e-02 1.0 4.99e+06 1.0 0.0e+00 0.0e+00 0.0e+00 4 1 0 0 0 4 1 0 0 0 112</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatPtAPSymbolic 4 1.0 2.7664e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatPtAPNumeric 4 1.0 1.6732e-02 1.0 4.99e+06 1.0 0.0e+00 0.0e+00 0.0e+00 2 1 0 0 0 2 1 0 0 0 298</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatGetSymTrans 4 1.0 3.6621e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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KSPGMRESOrthog 16 1.0 9.7778e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
KSPSetUp 90 1.0 5.7650e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
KSPSolve 1 1.0 7.8831e-01 1.0 4.90e+08 1.0 0.0e+00 0.0e+00 0.0e+00 77 99 0 0 0 77 99 0 0 0 622</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
PCSetUp 90 1.0 9.9725e-02 1.0 4.19e+07 1.0 0.0e+00 0.0e+00 0.0e+00 10 8 0 0 0 10 8 0 0 0 420</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
PCSetUpOnBlocks 112 1.0 8.7547e-02 1.0 4.19e+07 1.0 0.0e+00 0.0e+00 0.0e+00 9 8 0 0 0 9 8 0 0 0 479</div>
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PCApply 16 1.0 7.1952e-01 1.0 4.89e+08 1.0 0.0e+00 0.0e+00 0.0e+00 71 99 0 0 0 71 99 0 0 0 680</div>
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SNESSolve 1 1.0 7.9225e-01 1.0 4.90e+08 1.0 0.0e+00 0.0e+00 0.0e+00 78 99 0 0 0 78 99 0 0 0 619</div>
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SNESFunctionEval 2 1.0 3.2940e-03 1.0 4.68e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 14</div>
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SNESJacobianEval 1 1.0 4.7255e-04 1.0 4.26e+03 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 9</div>
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Memory usage is given in bytes:</div>
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Object Type Creations Destructions Memory Descendants' Mem.</div>
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Reports information only for process 0.</div>
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--- Event Stage 0: Main Stage</div>
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Vector 971 839 15573352 0.</div>
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Vector Scatter 290 289 189584 0.</div>
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Index Set 1171 823 951928 0.</div>
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IS L to G Mapping 110 109 2156656 0.</div>
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Application Order 6 6 99952 0.</div>
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MatMFFD 1 1 776 0.</div>
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Matrix 189 189 24083332 0.</div>
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Matrix Null Space 4 4 2432 0.</div>
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Krylov Solver 90 90 122720 0.</div>
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DMKSP interface 1 1 648 0.</div>
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Preconditioner 90 90 89872 0.</div>
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SNES 1 1 1328 0.</div>
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SNESLineSearch 1 1 984 0.</div>
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DMSNES 1 1 664 0.</div>
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Distributed Mesh 2 2 9168 0.</div>
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Star Forest Bipartite Graph 4 4 3168 0.</div>
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Discrete System 2 2 1712 0.</div>
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Viewer 1 0 0 0.</div>
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========================================================================================================================</div>
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Average time to get PetscTime(): 9.53674e-07</div>
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#PETSc Option Table entries:</div>
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-ib_ksp_converged_reason</div>
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-ib_ksp_monitor_true_residual</div>
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-ib_snes_type ksponly</div>
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-log_summary</div>
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-stokes_ib_pc_level_0_sub_pc_factor_nonzeros_along_diagonal</div>
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-stokes_ib_pc_level_0_sub_pc_type ilu</div>
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-stokes_ib_pc_level_ksp_richardson_self_scale</div>
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-stokes_ib_pc_level_ksp_type richardson</div>
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-stokes_ib_pc_level_pc_asm_local_type additive</div>
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-stokes_ib_pc_level_sub_pc_factor_nonzeros_along_diagonal</div>
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-stokes_ib_pc_level_sub_pc_type lu</div>
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#End of PETSc Option Table entries</div>
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Compiled without FORTRAN kernels</div>
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Compiled with full precision matrices (default)</div>
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sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4</div>
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Configure options: --CC=mpicc --CXX=mpicxx --FC=mpif90 --with-default-arch=0 --PETSC_ARCH=linux-opt --with-debugging=0 --with-c++-support=1 --with-hypre=1 --download-hypre=1 --with-hdf5=yes --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3 --FOPTFLAGS=-O3</div>
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Libraries compiled on Thu Jan 14 01:29:56 2016 on aorta </div>
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Machine characteristics: Linux-3.13.0-63-generic-x86_64-with-Ubuntu-14.04-trusty</div>
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Using PETSc directory: /not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc</div>
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Using PETSc arch: linux-opt</div>
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Using C compiler: mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -Qunused-arguments -O3 ${COPTFLAGS} ${CFLAGS}</div>
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Using Fortran compiler: mpif90 -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O3 ${FOPTFLAGS} ${FFLAGS} </div>
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Using include paths: -I/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/include -I/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/include -I/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/include -I/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/include
-I/not_backed_up/softwares/MPICH/include</div>
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Using C linker: mpicc</div>
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Using Fortran linker: mpif90</div>
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Using libraries: -Wl,-rpath,/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -lpetsc -Wl,-rpath,/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/lib -L/not_backed_up/amneetb/softwares/PETSc-BitBucket/PETSc/linux-opt/lib
-lHYPRE -Wl,-rpath,/not_backed_up/softwares/MPICH/lib -L/not_backed_up/softwares/MPICH/lib -Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu
-L/lib/x86_64-linux-gnu -lmpicxx -lstdc++ -llapack -lblas -lpthread -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -lm -lmpifort -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpicxx -lstdc++ -Wl,-rpath,/not_backed_up/softwares/MPICH/lib -L/not_backed_up/softwares/MPICH/lib
-Wl,-rpath,/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -Wl,-rpath,/lib/x86_64-linux-gnu -L/lib/x86_64-linux-gnu -Wl,-rpath,/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu
-ldl -Wl,-rpath,/not_backed_up/softwares/MPICH/lib -lmpi -lgcc_s -ldl </div>
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