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<div class="">On Jan 13, 2016, at 6:22 PM, Matthew Knepley <<a href="mailto:knepley@gmail.com" class="">knepley@gmail.com</a>> wrote:</div>
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Can you mail us a -log_summary for a rough cut? Sometimes its hard</div>
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to interpret the data avalanche from one of those tools without a simple map.</div>
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Does this indicate some hot spots?<br class="">
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*** WIDEN YOUR WINDOW TO 120 CHARACTERS. Use 'enscript -r -fCourier9' to print this document ***</div>
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---------------------------------------------- PETSc Performance Summary: ----------------------------------------------</div>
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./main2d on a darwin-dbg named <a href="http://Amneets-MBP.attlocal.net" class="">
Amneets-MBP.attlocal.net</a> with 1 processor, by Taylor Wed Jan 13 21:07:43 2016</div>
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Using Petsc Development GIT revision: v3.6.1-2556-g6721a46 GIT Date: 2015-11-16 13:07:08 -0600</div>
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Max Max/Min Avg Total </div>
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Time (sec): 1.039e+01 1.00000 1.039e+01</div>
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Objects: 2.834e+03 1.00000 2.834e+03</div>
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Flops: 3.552e+08 1.00000 3.552e+08 3.552e+08</div>
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Flops/sec: 3.418e+07 1.00000 3.418e+07 3.418e+07</div>
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Memory: 3.949e+07 1.00000 3.949e+07</div>
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MPI Messages: 0.000e+00 0.00000 0.000e+00 0.000e+00</div>
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MPI Message Lengths: 0.000e+00 0.00000 0.000e+00 0.000e+00</div>
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MPI Reductions: 0.000e+00 0.00000</div>
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Flop counting convention: 1 flop = 1 real number operation of type (multiply/divide/add/subtract)</div>
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e.g., VecAXPY() for real vectors of length N --> 2N flops</div>
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and VecAXPY() for complex vectors of length N --> 8N flops</div>
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Summary of Stages: ----- Time ------ ----- Flops ----- --- Messages --- -- Message Lengths -- -- Reductions --</div>
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Avg %Total Avg %Total counts %Total Avg %Total counts %Total </div>
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0: Main Stage: 1.0391e+01 100.0% 3.5520e+08 100.0% 0.000e+00 0.0% 0.000e+00 0.0% 0.000e+00 0.0% </div>
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See the 'Profiling' chapter of the users' manual for details on interpreting output.</div>
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Phase summary info:</div>
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Count: number of times phase was executed</div>
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Time and Flops: Max - maximum over all processors</div>
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Ratio - ratio of maximum to minimum over all processors</div>
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Mess: number of messages sent</div>
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Avg. len: average message length (bytes)</div>
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Reduct: number of global reductions</div>
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Global: entire computation</div>
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Stage: stages of a computation. Set stages with PetscLogStagePush() and PetscLogStagePop().</div>
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%T - percent time in this phase %F - percent flops in this phase</div>
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%M - percent messages in this phase %L - percent message lengths in this phase</div>
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%R - percent reductions in this phase</div>
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Total Mflop/s: 10e-6 * (sum of flops over all processors)/(max time over all processors)</div>
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##########################################################</div>
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# #</div>
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# WARNING!!! #</div>
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# #</div>
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# This code was compiled with a debugging option, #</div>
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# To get timing results run ./configure #</div>
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# using --with-debugging=no, the performance will #</div>
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# be generally two or three times faster. #</div>
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# #</div>
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##########################################################</div>
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Event Count Time (sec) Flops --- Global --- --- Stage --- Total</div>
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Max Ratio Max Ratio Max Ratio Mess Avg len Reduct %T %F %M %L %R %T %F %M %L %R Mflop/s</div>
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--- Event Stage 0: Main Stage</div>
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VecDot 4 1.0 9.0525e-04 1.0 3.31e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 37</div>
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VecMDot 533 1.0 1.5936e-02 1.0 5.97e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 375</div>
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VecNorm 412 1.0 9.2107e-03 1.0 3.57e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 388</div>
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VecScale 331 1.0 5.8195e-01 1.0 1.41e+06 1.0 0.0e+00 0.0e+00 0.0e+00 6 0 0 0 0 6 0 0 0 0 2</div>
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VecCopy 116 1.0 1.9983e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecSet 18362 1.0 1.5249e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
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VecAXPY 254 1.0 4.3961e-01 1.0 1.95e+06 1.0 0.0e+00 0.0e+00 0.0e+00 4 1 0 0 0 4 1 0 0 0 4</div>
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VecAYPX 92 1.0 2.5167e-03 1.0 2.66e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 106</div>
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VecAXPBYCZ 36 1.0 8.6242e-04 1.0 2.94e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 341</div>
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VecWAXPY 58 1.0 1.2539e-03 1.0 2.47e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 197</div>
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VecMAXPY 638 1.0 2.3439e-02 1.0 7.68e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 2 0 0 0 0 2 0 0 0 328</div>
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VecSwap 111 1.0 1.9721e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 2 0 0 0 0 2 0 0 0 0 0</div>
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VecAssemblyBegin 607 1.0 3.8150e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecAssemblyEnd 607 1.0 8.3705e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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VecScatterBegin 26434 1.0 3.0096e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 3 0 0 0 0 3 0 0 0 0 0</div>
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VecNormalize 260 1.0 4.9754e-01 1.0 3.84e+06 1.0 0.0e+00 0.0e+00 0.0e+00 5 1 0 0 0 5 1 0 0 0 8</div>
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BuildTwoSidedF 600 1.0 1.8942e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatMult 365 1.0 6.0306e-01 1.0 6.26e+07 1.0 0.0e+00 0.0e+00 0.0e+00 6 18 0 0 0 6 18 0 0 0 104</div>
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MatSolve 8775 1.0 6.8506e-01 1.0 2.25e+08 1.0 0.0e+00 0.0e+00 0.0e+00 7 63 0 0 0 7 63 0 0 0 328</div>
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MatLUFactorSym 85 1.0 1.0664e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
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MatLUFactorNum 85 1.0 1.2066e-01 1.0 4.23e+07 1.0 0.0e+00 0.0e+00 0.0e+00 1 12 0 0 0 1 12 0 0 0 350</div>
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MatScale 4 1.0 4.0145e-04 1.0 2.51e+05 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 625</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatAssemblyBegin 108 1.0 4.8849e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatAssemblyEnd 108 1.0 9.8455e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatGetRow 33120 1.0 1.4157e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatGetRowIJ 85 1.0 2.6060e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatGetSubMatrice 4 1.0 4.2922e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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MatGetOrdering 85 1.0 3.1230e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatAXPY 4 1.0 4.0459e-01 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 4 0 0 0 0 4 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatPtAP 4 1.0 1.1362e-01 1.0 4.99e+06 1.0 0.0e+00 0.0e+00 0.0e+00 1 1 0 0 0 1 1 0 0 0 44</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatPtAPSymbolic 4 1.0 6.4973e-02 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 1 0 0 0 0 1 0 0 0 0 0</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatPtAPNumeric 4 1.0 4.8521e-02 1.0 4.99e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 103</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
MatGetSymTrans 4 1.0 5.9780e-04 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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KSPGMRESOrthog 182 1.0 2.0538e-02 1.0 5.11e+06 1.0 0.0e+00 0.0e+00 0.0e+00 0 1 0 0 0 0 1 0 0 0 249</div>
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KSPSetUp 90 1.0 2.1210e-03 1.0 0.00e+00 0.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 0</div>
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KSPSolve 1 1.0 9.5567e+00 1.0 3.50e+08 1.0 0.0e+00 0.0e+00 0.0e+00 92 98 0 0 0 92 98 0 0 0 37</div>
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PCSetUp 90 1.0 4.0597e-01 1.0 4.23e+07 1.0 0.0e+00 0.0e+00 0.0e+00 4 12 0 0 0 4 12 0 0 0 104</div>
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PCSetUpOnBlocks 91 1.0 2.9886e-01 1.0 4.23e+07 1.0 0.0e+00 0.0e+00 0.0e+00 3 12 0 0 0 3 12 0 0 0 141</div>
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PCApply 13 1.0 9.0558e+00 1.0 3.49e+08 1.0 0.0e+00 0.0e+00 0.0e+00 87 98 0 0 0 87 98 0 0 0 39</div>
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SNESSolve 1 1.0 9.5729e+00 1.0 3.50e+08 1.0 0.0e+00 0.0e+00 0.0e+00 92 98 0 0 0 92 98 0 0 0 37</div>
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SNESFunctionEval 2 1.0 1.3347e-02 1.0 4.68e+04 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 4</div>
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SNESJacobianEval 1 1.0 2.4613e-03 1.0 4.26e+03 1.0 0.0e+00 0.0e+00 0.0e+00 0 0 0 0 0 0 0 0 0 0 2</div>
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Memory usage is given in bytes:</div>
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Object Type Creations Destructions Memory Descendants' Mem.</div>
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Reports information only for process 0.</div>
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--- Event Stage 0: Main Stage</div>
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Vector 870 762 13314200 0.</div>
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Vector Scatter 290 289 189584 0.</div>
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Index Set 1171 823 951096 0.</div>
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IS L to G Mapping 110 109 2156656 0.</div>
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Application Order 6 6 99952 0.</div>
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MatMFFD 1 1 776 0.</div>
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Matrix 189 189 24202324 0.</div>
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Matrix Null Space 4 4 2432 0.</div>
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Krylov Solver 90 90 190080 0.</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
DMKSP interface 1 1 648 0.</div>
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Preconditioner 90 90 89128 0.</div>
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SNES 1 1 1328 0.</div>
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SNESLineSearch 1 1 856 0.</div>
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DMSNES 1 1 664 0.</div>
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Distributed Mesh 2 2 9024 0.</div>
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Star Forest Bipartite Graph 4 4 3168 0.</div>
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Discrete System 2 2 1696 0.</div>
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Viewer 1 0 0 0.</div>
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========================================================================================================================</div>
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Average time to get PetscTime(): 4.74e-08</div>
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#PETSc Option Table entries:</div>
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-ib_ksp_converged_reason</div>
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-ib_ksp_monitor_true_residual</div>
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-ib_snes_type ksponly</div>
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-log_summary</div>
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-stokes_ib_pc_level_ksp_richardson_self_scae</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
-stokes_ib_pc_level_ksp_type gmres</div>
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-stokes_ib_pc_level_pc_asm_local_type additive</div>
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-stokes_ib_pc_level_pc_asm_type interpolate</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
-stokes_ib_pc_level_sub_pc_factor_nonzeros_along_diagonal</div>
<div style="margin: 0px; font-size: 15px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">
-stokes_ib_pc_level_sub_pc_type lu</div>
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#End of PETSc Option Table entries</div>
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Compiled without FORTRAN kernels</div>
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Compiled with full precision matrices (default)</div>
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sizeof(short) 2 sizeof(int) 4 sizeof(long) 8 sizeof(void*) 8 sizeof(PetscScalar) 8 sizeof(PetscInt) 4</div>
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Configure options: --CC=mpicc --CXX=mpicxx --FC=mpif90 --PETSC_ARCH=darwin-dbg --with-debugging=1 --with-c++-support=1 --with-hypre=1 --download-hypre=1 --with-hdf5=yes --with-hdf5-dir=/Users/Taylor/Documents/SOFTWARES/HDF5/</div>
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-----------------------------------------</div>
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Libraries compiled on Mon Nov 16 15:11:21 2015 on <a href="http://d209.math.ucdavis.edu" class="">
d209.math.ucdavis.edu</a> </div>
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Machine characteristics: Darwin-14.5.0-x86_64-i386-64bit</div>
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Using PETSc directory: /Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc</div>
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Using PETSc arch: darwin-dbg</div>
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Using C compiler: mpicc -g ${COPTFLAGS} ${CFLAGS}</div>
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Using Fortran compiler: mpif90 -g ${FOPTFLAGS} ${FFLAGS} </div>
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-----------------------------------------</div>
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Using include paths: -I/Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc/darwin-dbg/include -I/Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc/include -I/Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc/include -I/Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc/darwin-dbg/include
-I/opt/X11/include -I/Users/Taylor/Documents/SOFTWARES/HDF5/include -I/opt/local/include -I/Users/Taylor/Documents/SOFTWARES/MPICH/include</div>
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-----------------------------------------</div>
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Using C linker: mpicc</div>
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Using Fortran linker: mpif90</div>
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Using libraries: -Wl,-rpath,/Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc/darwin-dbg/lib -L/Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc/darwin-dbg/lib -lpetsc -Wl,-rpath,/Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc/darwin-dbg/lib
-L/Users/Taylor/Documents/SOFTWARES/PETSc-BitBucket/PETSc/darwin-dbg/lib -lHYPRE -Wl,-rpath,/Users/Taylor/Documents/SOFTWARES/MPICH/lib -L/Users/Taylor/Documents/SOFTWARES/MPICH/lib -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/6.1.0/lib/darwin
-L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/6.1.0/lib/darwin -lclang_rt.osx -lmpicxx -lc++ -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.1.0/lib/darwin
-L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.1.0/lib/darwin -lclang_rt.osx -llapack -lblas -Wl,-rpath,/opt/X11/lib -L/opt/X11/lib -lX11 -Wl,-rpath,/Users/Taylor/Documents/SOFTWARES/HDF5/lib -L/Users/Taylor/Documents/SOFTWARES/HDF5/lib
-lhdf5_hl -lhdf5 -lssl -lcrypto -lmpifort -lgfortran -Wl,-rpath,/opt/local/lib/gcc49/gcc/x86_64-apple-darwin14/4.9.1 -L/opt/local/lib/gcc49/gcc/x86_64-apple-darwin14/4.9.1 -Wl,-rpath,/opt/local/lib/gcc49 -L/opt/local/lib/gcc49 -lgfortran -lgcc_ext.10.5 -lquadmath
-lm -lclang_rt.osx -lmpicxx -lc++ -lclang_rt.osx -Wl,-rpath,/Users/Taylor/Documents/SOFTWARES/MPICH/lib -L/Users/Taylor/Documents/SOFTWARES/MPICH/lib -ldl -lmpi -lpmpi -lSystem -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.1.0/lib/darwin
-L/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../lib/clang/6.1.0/lib/darwin -lclang_rt.osx -ldl </div>
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